Wall clock time and date at job start Wed Apr 1 2020 01:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00216 * 2 1 4 4 C 1.52995 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47589 * 54.99602 * 4 3 2 6 6 C 1.53007 * 109.47124 * 294.99866 * 4 3 2 7 7 C 1.50702 * 109.47617 * 175.00056 * 4 3 2 8 8 O 1.21277 * 119.99277 * 359.97438 * 7 4 3 9 9 N 1.34770 * 120.00350 * 179.97438 * 7 4 3 10 10 C 1.48312 * 127.76847 * 179.88858 * 9 7 4 11 11 C 1.54386 * 104.53812 * 219.53272 * 10 9 7 12 12 H 1.09000 * 110.34514 * 95.18676 * 11 10 9 13 13 C 1.52997 * 110.34673 * 217.34020 * 11 10 9 14 14 N 1.46910 * 109.46942 * 292.12800 * 13 11 10 15 15 C 1.46892 * 110.99936 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47256 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99490 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00426 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00363 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00037 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00220 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99901 * 179.72435 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72227 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72075 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72111 * 23 21 19 27 27 C 1.54291 * 105.05279 * 336.26158 * 11 10 9 28 28 H 1.08997 * 110.34277 * 240.96775 * 27 11 10 29 29 C 1.53000 * 110.34346 * 118.81682 * 27 11 10 30 30 C 1.48144 * 127.83744 * 359.97438 * 9 7 4 31 31 H 1.09001 * 109.47667 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47043 * 300.00210 * 1 2 3 33 33 H 1.09001 * 109.47493 * 59.99803 * 1 2 3 34 34 H 1.09000 * 109.46849 * 60.00169 * 3 2 1 35 35 H 1.09000 * 109.47012 * 300.00075 * 3 2 1 36 36 H 1.08997 * 109.47430 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46891 * 300.00734 * 6 4 3 38 38 H 1.09008 * 109.46756 * 59.99485 * 6 4 3 39 39 H 1.09002 * 110.38268 * 100.81134 * 10 9 7 40 40 H 1.08997 * 110.51101 * 338.32751 * 10 9 7 41 41 H 1.08996 * 109.47845 * 172.12553 * 13 11 10 42 42 H 1.09004 * 109.47220 * 52.12170 * 13 11 10 43 43 H 1.00899 * 110.99413 * 303.94688 * 14 13 11 44 44 H 1.09000 * 109.47778 * 59.99479 * 15 14 13 45 45 H 1.09007 * 109.47317 * 299.99776 * 15 14 13 46 46 H 0.97000 * 120.00112 * 359.97438 * 18 16 15 47 47 H 0.96999 * 119.99993 * 180.27541 * 22 21 19 48 48 H 1.09009 * 109.47006 * 59.99668 * 29 27 11 49 49 H 1.08998 * 109.47417 * 179.97438 * 29 27 11 50 50 H 1.09000 * 109.47011 * 300.00125 * 29 27 11 51 51 H 1.09004 * 110.40846 * 21.61736 * 30 9 7 52 52 H 1.08999 * 110.50728 * 259.23773 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3065 7 6 4.1481 2.5559 -0.1245 8 8 3.4349 3.5335 -0.2048 9 7 5.4883 2.6958 -0.1459 10 6 6.2687 3.9515 -0.2631 11 6 7.4464 3.5905 -1.1938 12 1 7.2113 3.8585 -2.2239 13 6 8.7220 4.3018 -0.7382 14 7 8.5788 5.7483 -0.9514 15 6 9.7872 6.4656 -0.5237 16 6 9.6038 7.9430 -0.7577 17 8 8.5683 8.3574 -1.2345 18 7 10.5905 8.8036 -0.4383 19 6 10.4238 10.1476 -0.6517 20 1 9.5016 10.5167 -1.0754 21 6 11.4410 11.0348 -0.3219 22 7 11.2832 12.3225 -0.5315 23 14 13.0359 10.3965 0.4116 24 1 12.9244 10.3708 1.8922 25 1 13.2962 9.0229 -0.0892 26 1 14.1551 11.2882 0.0149 27 6 7.6081 2.0618 -1.0609 28 1 8.5970 1.8178 -0.6727 29 6 7.3870 1.3838 -2.4145 30 6 6.5147 1.6310 -0.0596 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 5.0828 0.4498 1.3059 37 1 3.6808 1.1524 2.1485 38 1 3.5531 -0.4556 1.3961 39 1 6.6382 4.2615 0.7144 40 1 5.6605 4.7391 -0.7078 41 1 9.5700 3.9319 -1.3143 42 1 8.8889 4.1056 0.3210 43 1 8.3593 5.9517 -1.9150 44 1 10.6430 6.1107 -1.0980 45 1 9.9612 6.2843 0.5370 46 1 11.4188 8.4721 -0.0575 47 1 11.9948 12.9415 -0.3050 48 1 8.1177 1.7576 -3.1318 49 1 7.5049 0.3058 -2.3045 50 1 6.3812 1.6051 -2.7717 51 1 6.0906 0.6698 -0.3503 52 1 6.9235 1.5756 0.9492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105931483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:47 Heat of formation + Delta-G solvation = -114.995124 kcal Electronic energy + Delta-G solvation = -29886.536261 eV Core-core repulsion = 25693.161529 eV Total energy + Delta-G solvation = -4193.374732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.65007 -38.89083 -38.37472 -37.81890 -35.49465 -34.16392 -33.85675 -32.76593 -31.66701 -30.57530 -27.87314 -27.19158 -26.95448 -26.07736 -25.29235 -23.71879 -22.63253 -21.68394 -20.29250 -19.44681 -19.25837 -18.31238 -17.72115 -16.54457 -16.41590 -16.22478 -16.01031 -15.72676 -15.46174 -15.03895 -14.96429 -14.66667 -14.42334 -14.32476 -13.84327 -13.71238 -13.46142 -13.36608 -13.22123 -12.94278 -12.77185 -12.58976 -12.53024 -12.27754 -12.12754 -11.91847 -11.87955 -11.80515 -11.68963 -11.62712 -11.27604 -11.16992 -11.01436 -10.92891 -10.79060 -10.59615 -10.04502 -9.97224 -9.94269 -9.56896 -8.93237 -8.59279 -8.19534 -8.14629 -6.30486 -3.81976 2.40311 2.56757 3.01789 3.06677 3.14760 3.45798 3.74459 3.92644 4.10273 4.19315 4.19514 4.39776 4.51225 4.54405 4.65457 4.81776 4.87186 4.92462 4.97123 4.99756 5.00842 5.12147 5.18380 5.22223 5.23343 5.25796 5.28148 5.30691 5.35542 5.42684 5.50400 5.53902 5.56064 5.60417 5.64837 5.75880 5.79249 5.80007 5.83092 5.90490 5.93830 6.01367 6.19999 6.73344 7.05872 7.32627 7.54132 7.58850 7.92565 8.15360 8.60365 8.95773 9.43020 9.83464 10.82697 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.001802 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.572800 B =15535.169466 C =16253.213314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.080 3.920 4 C -0.105 4.105 5 H 0.104 0.896 6 C -0.145 4.145 7 C 0.540 3.460 8 O -0.538 6.538 9 N -0.621 5.621 10 C 0.121 3.879 11 C -0.095 4.095 12 H 0.083 0.917 13 C 0.068 3.932 14 N -0.669 5.669 15 C 0.049 3.951 16 C 0.449 3.551 17 O -0.563 6.563 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.277 1.277 27 C -0.104 4.104 28 H 0.089 0.911 29 C -0.143 4.143 30 C 0.102 3.898 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.032 0.968 42 H 0.074 0.926 43 H 0.351 0.649 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.082 0.918 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.567 -31.311 1.968 32.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.003 3.997 4 C -0.126 4.126 5 H 0.122 0.878 6 C -0.203 4.203 7 C 0.329 3.671 8 O -0.415 6.415 9 N -0.355 5.355 10 C -0.001 4.001 11 C -0.115 4.115 12 H 0.102 0.898 13 C -0.062 4.062 14 N -0.302 5.302 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.445 6.445 18 N -0.231 5.231 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.202 1.202 27 C -0.123 4.123 28 H 0.107 0.893 29 C -0.201 4.201 30 C -0.021 4.021 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.171 0.829 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.922 -30.327 2.209 32.309 hybrid contribution 1.939 -0.279 -0.111 1.962 sum -8.983 -30.606 2.098 31.966 Atomic orbital electron populations 1.22737 0.80599 1.02699 1.00295 1.87781 1.19992 1.27899 1.95572 1.22225 0.91425 0.84212 1.01874 1.21107 0.95198 0.94541 1.01750 0.87827 1.21857 1.01717 1.01612 0.95087 1.19969 0.80439 0.90708 0.75991 1.90750 1.59801 1.40913 1.50035 1.49003 1.04290 1.09848 1.72406 1.22374 0.91317 0.86435 0.99989 1.22183 0.95127 0.93531 1.00616 0.89819 1.22049 0.94984 0.88064 1.01059 1.60052 1.35589 1.05484 1.29077 1.21691 0.91435 0.93791 1.01454 1.19721 0.85202 0.86972 0.84623 1.90577 1.27744 1.78622 1.47545 1.42206 1.15321 1.07651 1.57889 1.19439 1.04641 0.79364 1.39948 0.86287 1.25039 0.98174 0.95153 0.97805 1.69624 1.33904 1.01416 1.47202 0.86661 0.83730 0.78819 0.80086 1.19618 1.19570 1.20210 1.22165 0.99101 0.94877 0.96187 0.89263 1.21850 1.02124 1.00051 0.96051 1.22591 0.88514 0.91520 0.99469 0.89544 0.93935 0.93915 0.92362 0.92213 0.91630 0.92163 0.90655 0.90371 0.89303 0.94999 0.90765 0.82904 0.93805 0.89499 0.79716 0.91627 0.92164 0.92425 0.92551 0.89982 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.51 10.24 -35.23 -0.36 -3.87 16 3 C 0.08 0.75 4.67 37.16 0.17 0.92 16 4 C -0.10 -0.90 2.30 -91.77 -0.21 -1.11 16 5 H 0.10 0.77 7.95 -51.93 -0.41 0.35 16 6 C -0.15 -1.00 8.84 37.16 0.33 -0.67 16 7 C 0.54 6.31 7.27 -10.99 -0.08 6.23 16 8 O -0.54 -8.58 16.19 5.56 0.09 -8.49 16 9 N -0.62 -6.21 3.31 -169.17 -0.56 -6.77 16 10 C 0.12 1.37 6.44 -2.32 -0.01 1.36 16 11 C -0.09 -0.87 2.89 -89.22 -0.26 -1.13 16 12 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 13 C 0.07 0.69 4.80 -3.82 -0.02 0.67 16 14 N -0.67 -9.72 5.96 -115.05 -0.69 -10.40 16 15 C 0.05 0.78 6.17 -4.98 -0.03 0.75 16 16 C 0.45 10.13 7.82 -10.99 -0.09 10.04 16 17 O -0.56 -15.17 15.78 5.55 0.09 -15.09 16 18 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 19 C -0.31 -8.68 10.16 -14.94 -0.15 -8.83 16 20 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.87 13.96 55.50 0.77 -25.09 16 23 Si 0.88 19.33 27.74 -169.99 -4.72 14.61 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.27 -5.37 6.51 56.52 0.37 -5.00 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.10 -0.67 3.31 -89.21 -0.30 -0.97 16 28 H 0.09 0.47 7.71 -51.93 -0.40 0.07 16 29 C -0.14 -0.87 8.90 37.16 0.33 -0.54 16 30 C 0.10 0.66 4.80 -2.41 -0.01 0.65 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.24 8.14 -51.92 -0.42 -0.18 16 33 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.61 7.95 -51.93 -0.41 0.19 16 36 H 0.06 0.36 5.34 -51.93 -0.28 0.08 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.49 7.82 -51.92 -0.41 0.08 16 39 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 40 H 0.09 1.27 7.89 -51.93 -0.41 0.86 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 43 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.37 7.67 5.76 -40.82 -0.23 7.44 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.06 0.38 8.14 -51.92 -0.42 -0.05 16 49 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.08 0.41 6.28 -51.93 -0.33 0.08 16 52 H 0.08 0.41 8.01 -51.93 -0.42 0.00 16 LS Contribution 415.76 15.07 6.27 6.27 Total: -1.00 -35.34 415.76 -7.52 -42.86 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -9.06 Total: 10.35 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 0.69 Total: 9.73 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.53 Total: -56.36 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.18 Total: -27.45 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.72 Total: 14.61 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.34 -7.52 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105931483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.135 kcal (2) G-P(sol) polarization free energy of solvation -35.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds