Wall clock time and date at job start Wed Apr 1 2020 01:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00216 * 2 1 4 4 C 1.52995 * 109.47259 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47589 * 54.99602 * 4 3 2 6 6 C 1.53007 * 109.47124 * 294.99866 * 4 3 2 7 7 C 1.50702 * 109.47617 * 175.00056 * 4 3 2 8 8 O 1.21277 * 119.99277 * 359.97438 * 7 4 3 9 9 N 1.34770 * 120.00350 * 179.97438 * 7 4 3 10 10 C 1.48312 * 127.76847 * 179.88858 * 9 7 4 11 11 C 1.54386 * 104.53812 * 219.53272 * 10 9 7 12 12 H 1.09000 * 110.34514 * 95.18676 * 11 10 9 13 13 C 1.52997 * 110.34673 * 217.34020 * 11 10 9 14 14 N 1.46910 * 109.46942 * 292.12800 * 13 11 10 15 15 C 1.46892 * 110.99936 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47256 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99490 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00426 * 180.02562 * 16 15 14 19 19 C 1.37097 * 120.00363 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00037 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00220 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99901 * 179.72435 * 21 19 18 23 23 Si 1.86800 * 120.00194 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72227 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72075 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72111 * 23 21 19 27 27 C 1.54291 * 105.05279 * 336.26158 * 11 10 9 28 28 H 1.08997 * 110.34277 * 240.96775 * 27 11 10 29 29 C 1.53000 * 110.34346 * 118.81682 * 27 11 10 30 30 C 1.48144 * 127.83744 * 359.97438 * 9 7 4 31 31 H 1.09001 * 109.47667 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47043 * 300.00210 * 1 2 3 33 33 H 1.09001 * 109.47493 * 59.99803 * 1 2 3 34 34 H 1.09000 * 109.46849 * 60.00169 * 3 2 1 35 35 H 1.09000 * 109.47012 * 300.00075 * 3 2 1 36 36 H 1.08997 * 109.47430 * 179.97438 * 6 4 3 37 37 H 1.08998 * 109.46891 * 300.00734 * 6 4 3 38 38 H 1.09008 * 109.46756 * 59.99485 * 6 4 3 39 39 H 1.09002 * 110.38268 * 100.81134 * 10 9 7 40 40 H 1.08997 * 110.51101 * 338.32751 * 10 9 7 41 41 H 1.08996 * 109.47845 * 172.12553 * 13 11 10 42 42 H 1.09004 * 109.47220 * 52.12170 * 13 11 10 43 43 H 1.00899 * 110.99413 * 303.94688 * 14 13 11 44 44 H 1.09000 * 109.47778 * 59.99479 * 15 14 13 45 45 H 1.09007 * 109.47317 * 299.99776 * 15 14 13 46 46 H 0.97000 * 120.00112 * 359.97438 * 18 16 15 47 47 H 0.96999 * 119.99993 * 180.27541 * 22 21 19 48 48 H 1.09009 * 109.47006 * 59.99668 * 29 27 11 49 49 H 1.08998 * 109.47417 * 179.97438 * 29 27 11 50 50 H 1.09000 * 109.47011 * 300.00125 * 29 27 11 51 51 H 1.09004 * 110.40846 * 21.61736 * 30 9 7 52 52 H 1.08999 * 110.50728 * 259.23773 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8427 6 6 3.9963 0.5363 1.3065 7 6 4.1481 2.5559 -0.1245 8 8 3.4349 3.5335 -0.2048 9 7 5.4883 2.6958 -0.1459 10 6 6.2687 3.9515 -0.2631 11 6 7.4464 3.5905 -1.1938 12 1 7.2113 3.8585 -2.2239 13 6 8.7220 4.3018 -0.7382 14 7 8.5788 5.7483 -0.9514 15 6 9.7872 6.4656 -0.5237 16 6 9.6038 7.9430 -0.7577 17 8 8.5683 8.3574 -1.2345 18 7 10.5905 8.8036 -0.4383 19 6 10.4238 10.1476 -0.6517 20 1 9.5016 10.5167 -1.0754 21 6 11.4410 11.0348 -0.3219 22 7 11.2832 12.3225 -0.5315 23 14 13.0359 10.3965 0.4116 24 1 12.9244 10.3708 1.8922 25 1 13.2962 9.0229 -0.0892 26 1 14.1551 11.2882 0.0149 27 6 7.6081 2.0618 -1.0609 28 1 8.5970 1.8178 -0.6727 29 6 7.3870 1.3838 -2.4145 30 6 6.5147 1.6310 -0.0596 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6886 1.8463 -0.8900 36 1 5.0828 0.4498 1.3059 37 1 3.6808 1.1524 2.1485 38 1 3.5531 -0.4556 1.3961 39 1 6.6382 4.2615 0.7144 40 1 5.6605 4.7391 -0.7078 41 1 9.5700 3.9319 -1.3143 42 1 8.8889 4.1056 0.3210 43 1 8.3593 5.9517 -1.9150 44 1 10.6430 6.1107 -1.0980 45 1 9.9612 6.2843 0.5370 46 1 11.4188 8.4721 -0.0575 47 1 11.9948 12.9415 -0.3050 48 1 8.1177 1.7576 -3.1318 49 1 7.5049 0.3058 -2.3045 50 1 6.3812 1.6051 -2.7717 51 1 6.0906 0.6698 -0.3503 52 1 6.9235 1.5756 0.9492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105931483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:46 Heat of formation + Delta-G solvation = -143.649184 kcal Electronic energy + Delta-G solvation = -29887.778794 eV Core-core repulsion = 25693.161529 eV Total energy + Delta-G solvation = -4194.617266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46174 -40.30694 -39.50456 -38.61513 -36.66521 -35.86483 -34.86964 -33.75863 -33.47287 -31.46468 -28.78384 -28.19647 -27.56541 -26.77452 -26.51688 -25.12279 -23.46977 -22.40945 -21.36849 -20.93425 -20.29665 -19.99806 -18.48598 -17.85836 -17.19668 -17.16255 -17.05340 -16.77303 -16.63888 -16.28579 -15.74745 -15.69059 -15.60107 -15.32214 -14.97483 -14.89787 -14.49897 -14.39096 -14.21088 -14.06314 -13.90092 -13.57521 -13.43243 -13.25070 -13.20672 -13.02747 -12.84656 -12.55132 -12.45324 -12.42481 -12.39782 -12.34258 -11.98168 -11.94605 -11.64901 -11.61482 -11.51241 -11.47458 -10.85721 -10.71621 -10.43093 -10.24816 -9.76736 -9.26432 -8.41301 -6.02711 1.30103 1.36644 1.45389 1.51927 1.78936 1.96995 2.23637 2.73290 2.81782 3.15091 3.33136 3.49132 3.60166 3.75708 3.82734 3.85678 4.00959 4.17225 4.22596 4.27161 4.34866 4.41345 4.44110 4.46911 4.51425 4.58499 4.59743 4.61539 4.63211 4.67037 4.73985 4.82299 4.82819 4.87948 4.91082 4.94094 4.99234 5.08729 5.17852 5.20028 5.28277 5.33063 5.52857 5.55071 5.91297 6.08521 6.08866 6.39752 6.52588 6.60197 6.88487 7.04831 7.40242 7.98026 8.76612 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.001802 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.572800 B =15535.169466 C =16253.213314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.082 3.918 4 C -0.096 4.096 5 H 0.122 0.878 6 C -0.139 4.139 7 C 0.532 3.468 8 O -0.595 6.595 9 N -0.619 5.619 10 C 0.119 3.881 11 C -0.088 4.088 12 H 0.068 0.932 13 C 0.073 3.927 14 N -0.694 5.694 15 C 0.065 3.935 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.591 5.591 19 C -0.331 4.331 20 H 0.051 0.949 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.257 1.257 25 H -0.228 1.228 26 H -0.275 1.275 27 C -0.093 4.093 28 H 0.117 0.883 29 C -0.142 4.142 30 C 0.097 3.903 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.342 0.658 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.391 0.609 47 H 0.279 0.721 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.037 0.963 51 H 0.104 0.896 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.196 -36.214 3.446 36.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.005 3.995 4 C -0.117 4.117 5 H 0.140 0.860 6 C -0.196 4.196 7 C 0.322 3.678 8 O -0.477 6.477 9 N -0.351 5.351 10 C -0.004 4.004 11 C -0.108 4.108 12 H 0.087 0.913 13 C -0.055 4.055 14 N -0.326 5.326 15 C -0.067 4.067 16 C 0.233 3.767 17 O -0.502 6.502 18 N -0.233 5.233 19 C -0.461 4.461 20 H 0.070 0.930 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.788 3.212 24 H -0.182 1.182 25 H -0.151 1.151 26 H -0.201 1.201 27 C -0.112 4.112 28 H 0.135 0.865 29 C -0.199 4.199 30 C -0.024 4.024 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.160 0.840 44 H 0.098 0.902 45 H 0.134 0.866 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.057 0.943 51 H 0.123 0.877 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.523 -35.304 3.693 36.285 hybrid contribution 0.715 1.290 -0.639 1.607 sum -6.809 -34.014 3.055 34.823 Atomic orbital electron populations 1.22947 0.79361 1.04160 1.00608 1.87755 1.21400 1.27216 1.95570 1.22115 0.92326 0.84414 1.00631 1.21083 0.94297 0.92722 1.03596 0.86008 1.21844 1.02999 1.01444 0.93297 1.20611 0.80766 0.91322 0.75075 1.90719 1.61267 1.42911 1.52760 1.49095 1.04404 1.10513 1.71119 1.22267 0.91783 0.86311 1.00007 1.22109 0.93794 0.95898 0.98959 0.91315 1.22145 0.95855 0.85086 1.02453 1.60060 1.35540 1.08392 1.28602 1.21612 0.93140 0.88150 1.03804 1.21148 0.83679 0.89867 0.81963 1.90558 1.29971 1.80376 1.49317 1.42022 1.16708 1.05899 1.58622 1.19007 1.03141 0.82275 1.41639 0.93041 1.26169 1.02953 0.94904 0.97482 1.69817 1.35899 1.03505 1.48450 0.85319 0.76393 0.80108 0.79375 1.18182 1.15114 1.20060 1.22171 1.00451 0.92080 0.96533 0.86479 1.21847 1.01040 1.01365 0.95688 1.22934 0.87497 0.91177 1.00828 0.87494 0.93550 0.93760 0.93454 0.93818 0.89626 0.93280 0.89703 0.90667 0.93754 0.92524 0.89136 0.84019 0.90246 0.86587 0.77359 0.91157 0.92276 0.90272 0.94339 0.87736 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.40 -6.81 10.24 -148.98 -1.53 -8.34 16 3 C 0.08 1.58 4.67 71.98 0.34 1.92 16 4 C -0.10 -1.56 2.30 -11.54 -0.03 -1.59 16 5 H 0.12 1.55 7.95 -2.39 -0.02 1.53 16 6 C -0.14 -1.59 8.84 71.98 0.64 -0.95 16 7 C 0.53 12.71 7.27 87.66 0.64 13.34 16 8 O -0.60 -20.53 16.19 -3.02 -0.05 -20.58 16 9 N -0.62 -11.93 3.31 -807.52 -2.67 -14.60 16 10 C 0.12 2.75 6.44 86.50 0.56 3.31 16 11 C -0.09 -1.47 2.89 -9.89 -0.03 -1.49 16 12 H 0.07 1.37 7.71 -2.39 -0.02 1.35 16 13 C 0.07 1.23 4.80 86.30 0.41 1.64 16 14 N -0.69 -19.19 5.96 -517.92 -3.09 -22.27 16 15 C 0.07 1.87 6.17 85.56 0.53 2.40 16 16 C 0.45 20.11 7.82 87.66 0.69 20.80 16 17 O -0.62 -35.00 15.78 -3.07 -0.05 -35.05 16 18 N -0.59 -27.85 5.09 -306.99 -1.56 -29.42 16 19 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 20 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -0.94 5.50 84.92 0.47 -0.47 16 22 N -0.94 -57.08 13.96 21.66 0.30 -56.78 16 23 Si 0.97 38.60 27.74 68.60 1.90 40.50 16 24 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 25 H -0.23 -7.49 6.51 99.48 0.65 -6.84 16 26 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 27 C -0.09 -0.85 3.31 -9.88 -0.03 -0.88 16 28 H 0.12 0.54 7.71 -2.39 -0.02 0.52 16 29 C -0.14 -1.28 8.90 71.98 0.64 -0.64 16 30 C 0.10 0.91 4.80 86.54 0.42 1.32 16 31 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.04 0.96 7.95 -2.39 -0.02 0.94 16 36 H 0.09 0.62 5.34 -2.39 -0.01 0.61 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.86 7.82 -2.38 -0.02 0.84 16 39 H 0.08 1.76 7.78 -2.39 -0.02 1.74 16 40 H 0.04 1.40 7.89 -2.39 -0.02 1.38 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.09 1.27 8.02 -2.39 -0.02 1.26 16 43 H 0.34 10.54 8.43 -89.69 -0.76 9.78 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 46 H 0.39 14.99 5.76 -92.71 -0.53 14.45 16 47 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 48 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.08 0.40 8.14 -2.39 -0.02 0.39 16 50 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.10 0.56 6.28 -2.38 -0.01 0.55 16 52 H 0.10 0.58 8.01 -2.39 -0.02 0.57 16 Total: -1.00 -87.42 415.76 0.16 -87.26 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.43 Total: 37.85 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: 7.33 Total: 21.43 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -7.02 Total: -123.07 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -1.62 Total: -63.96 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -87.42 0.16 -87.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105931483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.392 kcal (2) G-P(sol) polarization free energy of solvation -87.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds