Wall clock time and date at job start Wed Apr 1 2020 01:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50372 * 2 1 4 4 C 1.53093 * 109.51067 * 239.90716 * 2 1 3 5 5 N 1.47009 * 109.25897 * 183.21221 * 4 2 1 6 6 C 1.46906 * 111.00113 * 182.39048 * 5 4 2 7 7 C 1.47018 * 110.75449 * 58.61875 * 5 4 2 8 8 C 1.53103 * 109.25512 * 301.38448 * 7 5 4 9 9 H 1.08994 * 109.50131 * 296.91180 * 8 7 5 10 10 C 1.50697 * 109.50435 * 176.78206 * 8 7 5 11 11 O 1.21279 * 120.00046 * 244.99884 * 10 8 7 12 12 N 1.34779 * 120.00192 * 64.99700 * 10 8 7 13 13 C 1.46496 * 119.99819 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46901 * 179.97438 * 13 12 10 15 15 C 1.53009 * 109.51007 * 60.00322 * 14 13 12 16 16 C 1.53297 * 109.51406 * 180.10028 * 14 13 12 17 17 N 1.47150 * 108.38563 * 172.22990 * 16 14 13 18 18 C 1.36939 * 120.98165 * 129.44263 * 17 16 14 19 19 H 1.08001 * 120.00117 * 206.23384 * 18 17 16 20 20 C 1.38816 * 120.00039 * 26.24372 * 18 17 16 21 21 N 1.31622 * 120.00066 * 16.90708 * 20 18 17 22 22 Si 1.86791 * 119.99941 * 196.91143 * 20 18 17 23 23 H 1.48498 * 109.47320 * 59.99499 * 22 20 18 24 24 H 1.48497 * 109.47121 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47313 * 299.99532 * 22 20 18 26 26 C 1.47156 * 118.03404 * 309.46406 * 17 16 14 27 27 C 1.53297 * 108.38121 * 50.53739 * 26 17 16 28 28 O 1.42956 * 109.51409 * 299.90202 * 14 13 12 29 29 O 1.43016 * 109.50653 * 120.12237 * 2 1 3 30 30 H 1.09005 * 109.46941 * 180.08978 * 1 2 3 31 31 H 1.09006 * 109.47392 * 300.08959 * 1 2 3 32 32 H 1.08994 * 109.47485 * 60.09146 * 1 2 3 33 33 H 1.09001 * 109.50567 * 63.28294 * 4 2 1 34 34 H 1.08999 * 109.50698 * 303.15260 * 4 2 1 35 35 H 1.08989 * 109.47354 * 292.41960 * 6 5 4 36 36 H 1.09002 * 109.46643 * 52.41410 * 6 5 4 37 37 H 1.08998 * 109.47463 * 172.40931 * 6 5 4 38 38 H 1.09001 * 109.50397 * 61.31690 * 7 5 4 39 39 H 1.08994 * 109.50771 * 181.44876 * 7 5 4 40 40 H 0.96993 * 119.99421 * 0.02562 * 12 10 8 41 41 H 1.09003 * 109.47323 * 299.99958 * 13 12 10 42 42 H 1.09003 * 109.47317 * 60.00162 * 13 12 10 43 43 H 1.08997 * 109.47092 * 60.00050 * 15 14 13 44 44 H 1.08999 * 109.46903 * 179.97438 * 15 14 13 45 45 H 1.08995 * 109.46671 * 299.99637 * 15 14 13 46 46 H 1.08999 * 109.68000 * 291.95246 * 16 14 13 47 47 H 1.08995 * 109.68156 * 52.46474 * 16 14 13 48 48 H 0.96996 * 119.99941 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.67851 * 170.25630 * 26 17 16 50 50 H 1.08999 * 109.68054 * 290.81525 * 26 17 16 51 51 H 1.09001 * 109.51138 * 67.62170 * 27 26 17 52 52 H 1.08998 * 109.50484 * 187.72138 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2485 5 7 3.5093 -0.7879 -1.2046 6 6 4.0447 -1.4261 -2.4146 7 6 3.9640 -1.4882 0.0055 8 6 3.4334 -0.7570 1.2415 9 1 3.8533 0.2482 1.2778 10 6 3.8298 -1.5141 2.4828 11 8 2.9778 -2.0175 3.1839 12 7 5.1310 -1.6318 2.8137 13 6 5.5161 -2.3673 4.0207 14 6 7.0394 -2.3512 4.1633 15 6 7.5273 -0.9050 4.2705 16 6 7.4437 -3.1228 5.4248 17 7 8.9094 -3.2533 5.4391 18 6 9.6369 -2.9089 6.5470 19 1 10.6667 -2.6005 6.4423 20 6 9.0509 -2.9563 7.8045 21 7 7.9361 -3.6320 7.9860 22 14 9.8446 -2.0611 9.2390 23 1 9.9234 -0.6098 8.9343 24 1 9.0287 -2.2659 10.4627 25 1 11.2124 -2.5954 9.4603 26 6 9.5701 -3.7645 4.2277 27 6 9.0622 -2.9616 3.0246 28 8 7.6326 -2.9718 3.0203 29 8 2.0075 -0.6765 1.1660 30 1 -0.3633 -1.0277 0.0016 31 1 -0.3634 0.5152 0.8892 32 1 -0.3634 0.5124 -0.8907 33 1 1.7274 -0.1788 -2.1390 34 1 1.6332 -1.7339 -1.2764 35 1 3.7629 -2.4788 -2.4252 36 1 3.6372 -0.9320 -3.2966 37 1 5.1314 -1.3407 -2.4200 38 1 3.5868 -2.5108 -0.0024 39 1 5.0536 -1.5018 0.0304 40 1 5.8122 -1.2288 2.2531 41 1 5.0641 -1.8958 4.8933 42 1 5.1696 -3.3980 3.9442 43 1 7.0760 -0.4330 5.1432 44 1 8.6125 -0.8943 4.3726 45 1 7.2411 -0.3575 3.3725 46 1 7.1150 -2.5777 6.3096 47 1 6.9866 -4.1121 5.4122 48 1 7.5264 -3.6648 8.8646 49 1 10.6496 -3.6443 4.3199 50 1 9.3275 -4.8187 4.0943 51 1 9.4179 -1.9338 3.0965 52 1 9.4330 -3.4118 2.1039 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108024837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:34 Heat of formation + Delta-G solvation = -86.857519 kcal Electronic energy + Delta-G solvation = -31759.923441 eV Core-core repulsion = 27567.768847 eV Total energy + Delta-G solvation = -4192.154594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.52912 -39.37645 -38.46731 -36.05046 -34.90959 -34.33936 -33.26822 -31.78827 -31.27502 -29.64874 -27.97006 -27.43366 -26.59249 -25.88715 -24.56069 -23.25123 -22.78863 -21.36992 -20.85867 -20.29207 -18.75167 -17.51132 -17.07839 -16.81303 -16.31595 -16.02115 -15.76051 -15.51121 -15.15544 -15.08024 -14.61665 -14.34714 -14.30598 -13.97496 -13.89665 -13.53675 -13.23162 -13.03178 -12.97857 -12.82819 -12.66282 -12.52003 -12.42928 -12.14134 -12.02477 -11.89078 -11.60502 -11.44891 -11.21231 -11.03051 -10.98610 -10.82624 -10.69667 -10.33348 -10.28915 -10.00476 -9.90132 -9.68099 -9.52681 -9.07309 -8.85586 -8.82380 -8.55135 -6.76225 -5.86097 -3.29637 2.64600 2.79315 3.33649 3.40325 3.40823 3.41528 3.83276 4.21916 4.41186 4.42275 4.51850 4.60768 4.75118 4.83664 4.96351 5.02826 5.09178 5.12167 5.16263 5.23558 5.31762 5.32401 5.44397 5.46591 5.48372 5.49686 5.51092 5.66250 5.69890 5.85853 5.89613 5.91768 6.00103 6.07857 6.11759 6.28971 6.43089 6.46787 6.51318 6.54385 6.64961 6.73595 6.80448 6.88342 7.05103 7.44799 7.62817 7.68817 7.85182 8.30931 8.32957 9.09030 9.72123 10.29159 11.21903 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019896 B = 0.002556 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.971924 B =10953.142493 C =11852.650521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.020 3.980 5 N -0.541 5.541 6 C 0.024 3.976 7 C 0.029 3.971 8 C 0.081 3.919 9 H 0.091 0.909 10 C 0.517 3.483 11 O -0.521 6.521 12 N -0.713 5.713 13 C 0.141 3.859 14 C 0.079 3.921 15 C -0.162 4.162 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.256 4.256 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.904 3.096 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.384 6.384 29 O -0.353 6.353 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.402 0.598 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.029 0.971 48 H 0.257 0.743 49 H 0.061 0.939 50 H 0.025 0.975 51 H 0.048 0.952 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.610 7.973 -20.410 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.087 0.913 4 C -0.108 4.108 5 N -0.265 5.265 6 C -0.124 4.124 7 C -0.100 4.100 8 C 0.019 3.981 9 H 0.109 0.891 10 C 0.300 3.700 11 O -0.395 6.395 12 N -0.366 5.366 13 C 0.018 3.982 14 C 0.038 3.962 15 C -0.220 4.220 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.304 6.304 29 O -0.271 6.271 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.237 0.763 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.115 0.885 47 H 0.048 0.952 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.043 0.957 51 H 0.066 0.934 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.361 7.877 -19.694 23.185 hybrid contribution 0.863 -0.099 0.445 0.976 sum -8.498 7.778 -19.249 22.433 Atomic orbital electron populations 1.21732 0.92348 1.03255 1.02777 1.22230 0.95212 0.95636 0.84031 0.91308 1.22901 0.87759 1.00597 0.99564 1.62226 1.09132 1.52728 1.02451 1.22397 1.01121 0.97020 0.91836 1.22703 1.01568 0.96437 0.89290 1.21900 0.83651 0.99727 0.92839 0.89119 1.19966 0.82971 0.80960 0.86097 1.90735 1.49831 1.46724 1.52251 1.45880 1.06592 1.56181 1.27996 1.21388 0.93048 0.97115 0.86675 1.22555 0.90423 0.93458 0.89814 1.22211 1.03447 0.95633 1.00664 1.21288 0.84438 0.97331 0.93628 1.43986 1.01835 1.74465 1.11097 1.19110 0.96430 1.38724 0.84233 0.91460 1.25042 0.98179 0.98925 0.97343 1.70002 1.20888 1.40997 1.22631 0.86355 0.78639 0.79850 0.81842 1.20971 1.21532 1.20859 1.21597 0.96849 0.95600 0.87692 1.23032 0.81325 0.99851 0.98958 1.87801 1.19631 1.80014 1.42951 1.88136 1.18333 1.78239 1.42370 0.91676 0.91224 0.90838 0.89428 0.93616 0.95219 0.91076 0.90758 0.93038 0.88680 0.76281 0.89905 0.90757 0.91829 0.90789 0.93923 0.88513 0.95248 0.93332 0.92051 0.95675 0.93368 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.57 37.16 0.36 -0.75 16 2 C 0.09 0.84 3.43 -26.69 -0.09 0.75 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 4 C 0.02 0.17 4.94 -3.72 -0.02 0.15 16 5 N -0.54 -4.95 4.99 -242.60 -1.21 -6.16 16 6 C 0.02 0.17 9.63 60.07 0.58 0.75 16 7 C 0.03 0.30 4.90 -3.71 -0.02 0.28 16 8 C 0.08 0.99 3.22 -27.83 -0.09 0.90 16 9 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 10 C 0.52 7.95 7.18 -10.99 -0.08 7.87 16 11 O -0.52 -10.32 16.51 -14.27 -0.24 -10.56 16 12 N -0.71 -10.13 5.12 -60.30 -0.31 -10.44 16 13 C 0.14 2.40 4.82 -4.04 -0.02 2.38 16 14 C 0.08 1.42 0.76 -90.46 -0.07 1.36 16 15 C -0.16 -2.70 7.92 37.16 0.29 -2.40 16 16 C 0.16 3.67 4.11 -3.53 -0.01 3.66 16 17 N -0.59 -14.16 2.57 -171.82 -0.44 -14.60 16 18 C -0.26 -6.72 9.65 -15.06 -0.15 -6.87 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 21 N -0.90 -25.52 11.14 55.49 0.62 -24.91 16 22 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.11 2.19 6.74 -3.53 -0.02 2.17 16 27 C 0.05 0.77 6.60 37.31 0.25 1.02 16 28 O -0.38 -6.81 9.98 -35.23 -0.35 -7.17 16 29 O -0.35 -4.80 9.65 -55.06 -0.53 -5.33 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.03 0.22 8.14 -51.94 -0.42 -0.20 16 36 H 0.07 0.41 8.08 -51.93 -0.42 0.00 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 40 H 0.40 4.87 7.06 -40.82 -0.29 4.58 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.07 1.35 6.12 -51.93 -0.32 1.03 16 45 H 0.04 0.58 6.86 -51.93 -0.36 0.23 16 46 H 0.10 2.46 6.13 -51.93 -0.32 2.14 16 47 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.05 0.78 6.26 -51.93 -0.32 0.45 16 52 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -32.05 402.15 -9.77 -41.83 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -9.17 Total: 3.87 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 0.82 Total: 11.28 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -1.34 Total: -56.10 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -1.12 Total: -23.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.05 -9.77 -41.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108024837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.030 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds