Wall clock time and date at job start Wed Apr 1 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.50800 * 2 1 4 4 C 1.53095 * 109.53940 * 239.88455 * 2 1 3 5 5 N 1.47021 * 109.25312 * 183.19731 * 4 2 1 6 6 C 1.46901 * 110.99743 * 182.39430 * 5 4 2 7 7 C 1.47016 * 110.75367 * 58.62174 * 5 4 2 8 8 C 1.53096 * 109.25664 * 301.38211 * 7 5 4 9 9 H 1.09007 * 109.54214 * 296.89460 * 8 7 5 10 10 C 1.50696 * 109.50722 * 176.78439 * 8 7 5 11 11 O 1.21282 * 119.99906 * 245.21794 * 10 8 7 12 12 N 1.34770 * 119.99937 * 65.21750 * 10 8 7 13 13 C 1.46505 * 119.99904 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47120 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.55056 * 304.87119 * 14 13 12 16 16 C 1.53289 * 109.51322 * 184.74426 * 14 13 12 17 17 N 1.47150 * 108.38694 * 187.77634 * 16 14 13 18 18 C 1.36938 * 120.98008 * 230.51419 * 17 16 14 19 19 H 1.07999 * 119.99881 * 153.30676 * 18 17 16 20 20 C 1.38812 * 120.00290 * 333.30599 * 18 17 16 21 21 N 1.31627 * 119.99598 * 343.56628 * 20 18 17 22 22 Si 1.86799 * 120.00114 * 163.56240 * 20 18 17 23 23 H 1.48499 * 109.46664 * 90.00462 * 22 20 18 24 24 H 1.48504 * 109.46853 * 209.99946 * 22 20 18 25 25 H 1.48489 * 109.47164 * 330.00259 * 22 20 18 26 26 C 1.47148 * 118.03671 * 50.53011 * 17 16 14 27 27 C 1.53291 * 108.38721 * 309.46801 * 26 17 16 28 28 O 1.42964 * 109.51107 * 64.99647 * 14 13 12 29 29 O 1.43017 * 109.25958 * 56.84671 * 8 7 5 30 30 H 1.08994 * 109.47168 * 299.91894 * 1 2 3 31 31 H 1.09004 * 109.46923 * 59.91679 * 1 2 3 32 32 H 1.08994 * 109.47524 * 179.91306 * 1 2 3 33 33 H 1.08999 * 109.51238 * 303.12888 * 4 2 1 34 34 H 1.09004 * 109.50499 * 63.22270 * 4 2 1 35 35 H 1.09002 * 109.46740 * 60.00017 * 6 5 4 36 36 H 1.08996 * 109.47283 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47403 * 300.00022 * 6 5 4 38 38 H 1.08992 * 109.50357 * 181.44860 * 7 5 4 39 39 H 1.09003 * 109.50438 * 61.31697 * 7 5 4 40 40 H 0.97002 * 120.00248 * 359.97438 * 12 10 8 41 41 H 1.08997 * 109.47357 * 59.99428 * 13 12 10 42 42 H 1.09005 * 109.46617 * 299.99369 * 13 12 10 43 43 H 1.09007 * 109.46643 * 180.12992 * 15 14 13 44 44 H 1.09000 * 109.46708 * 300.12354 * 15 14 13 45 45 H 1.09000 * 109.47361 * 60.12564 * 15 14 13 46 46 H 1.08995 * 109.68479 * 68.04536 * 16 14 13 47 47 H 1.09005 * 109.71001 * 307.51329 * 16 14 13 48 48 H 0.96999 * 119.99327 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.68062 * 189.74731 * 26 17 16 50 50 H 1.08996 * 109.71169 * 69.21070 * 26 17 16 51 51 H 1.09004 * 109.51422 * 292.37884 * 27 26 17 52 52 H 1.08994 * 109.55599 * 172.24973 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7239 -1.2480 5 7 3.5102 -0.7875 -1.2035 6 6 4.0464 -1.4259 -2.4130 7 6 3.9648 -1.4871 0.0071 8 6 3.4334 -0.7556 1.2425 9 1 3.8527 0.2499 1.2794 10 6 3.8297 -1.5119 2.4843 11 8 2.9779 -2.0188 3.1832 12 7 5.1305 -1.6249 2.8181 13 6 5.5157 -2.3607 4.0250 14 6 7.0386 -2.3388 4.1714 15 6 7.6834 -2.8855 2.8961 16 6 7.4507 -3.2065 5.3660 17 7 8.8915 -3.0204 5.5997 18 6 9.7302 -4.0958 5.7236 19 1 10.7747 -3.9984 5.4671 20 6 9.2378 -5.3112 6.1790 21 7 8.0736 -5.3617 6.7912 22 14 10.2272 -6.8748 5.9230 23 1 11.1272 -7.0867 7.0851 24 1 9.3029 -8.0301 5.7956 25 1 11.0379 -6.7504 4.6852 26 6 9.4045 -1.6446 5.6966 27 6 8.8973 -0.8531 4.4858 28 8 7.4780 -0.9962 4.3909 29 8 2.0075 -0.6758 1.1665 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0016 33 1 1.6347 -1.7345 -1.2756 34 1 1.7276 -0.1802 -2.1389 35 1 3.7479 -0.8513 -3.2898 36 1 5.1343 -1.4596 -2.3543 37 1 3.6549 -2.4401 -2.4927 38 1 5.0544 -1.5000 0.0324 39 1 3.5881 -2.5099 -0.0005 40 1 5.8117 -1.2198 2.2589 41 1 5.1733 -3.3925 3.9464 42 1 5.0598 -1.8920 4.8972 43 1 8.7681 -2.8715 3.0027 44 1 7.3479 -3.9091 2.7294 45 1 7.3935 -2.2654 2.0478 46 1 7.2467 -4.2544 5.1463 47 1 6.8928 -2.9017 6.2515 48 1 7.7294 -6.2111 7.1090 49 1 10.4945 -1.6584 5.6957 50 1 9.0439 -1.1817 6.6151 51 1 9.3634 -1.2371 3.5784 52 1 9.1496 0.2003 4.6069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108024838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:38 Heat of formation + Delta-G solvation = -86.292838 kcal Electronic energy + Delta-G solvation = -31766.268838 eV Core-core repulsion = 27574.138730 eV Total energy + Delta-G solvation = -4192.130108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.53905 -39.38060 -38.46852 -36.06259 -34.92340 -34.34518 -33.27079 -31.76863 -31.27300 -29.66044 -27.97469 -27.44739 -26.60891 -25.90137 -24.57419 -23.24716 -22.80200 -21.37699 -20.85074 -20.29684 -18.74412 -17.53362 -17.07938 -16.81800 -16.33627 -16.02730 -15.79315 -15.44760 -15.17761 -15.07296 -14.73320 -14.38471 -14.14134 -14.03006 -13.92297 -13.53340 -13.25808 -13.03957 -13.00293 -12.75141 -12.70155 -12.51894 -12.43035 -12.17011 -12.00264 -11.92154 -11.61836 -11.46358 -11.21779 -11.03946 -10.99736 -10.83995 -10.68168 -10.33960 -10.28557 -10.01138 -9.90826 -9.67623 -9.53163 -9.06137 -8.86897 -8.83850 -8.55945 -6.75473 -5.86651 -3.30491 2.63987 2.79317 3.31969 3.39525 3.39925 3.40713 3.82673 4.23107 4.39771 4.41713 4.50466 4.59415 4.73869 4.83204 4.96210 5.01126 5.07958 5.11440 5.14579 5.22047 5.30937 5.31924 5.43321 5.44849 5.47816 5.49473 5.49831 5.64160 5.69516 5.85664 5.89436 5.91706 5.99486 6.07036 6.11769 6.28527 6.41921 6.45091 6.49620 6.54396 6.64680 6.72724 6.80368 6.87899 7.05102 7.44771 7.61879 7.68746 7.86198 8.30728 8.32438 9.08726 9.71732 10.29120 11.21347 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002536 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.170522 B =11040.513850 C =11157.150980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.020 3.980 5 N -0.541 5.541 6 C 0.024 3.976 7 C 0.028 3.972 8 C 0.081 3.919 9 H 0.092 0.908 10 C 0.517 3.483 11 O -0.520 6.520 12 N -0.714 5.714 13 C 0.141 3.859 14 C 0.078 3.922 15 C -0.162 4.162 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.384 6.384 29 O -0.352 6.352 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.402 0.598 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.096 0.904 47 H 0.030 0.970 48 H 0.256 0.744 49 H 0.061 0.939 50 H 0.026 0.974 51 H 0.048 0.952 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 11.187 -18.199 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.087 0.913 4 C -0.108 4.108 5 N -0.265 5.265 6 C -0.124 4.124 7 C -0.101 4.101 8 C 0.019 3.981 9 H 0.110 0.890 10 C 0.300 3.700 11 O -0.395 6.395 12 N -0.368 5.368 13 C 0.017 3.983 14 C 0.037 3.963 15 C -0.219 4.219 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.303 6.303 29 O -0.271 6.271 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.237 0.763 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.114 0.886 47 H 0.048 0.952 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.044 0.956 51 H 0.066 0.934 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.624 11.195 -17.423 22.837 hybrid contribution 0.976 -1.585 -0.567 1.946 sum -8.648 9.609 -17.990 22.153 Atomic orbital electron populations 1.21731 0.92330 1.03250 1.02794 1.22234 0.95221 0.95660 0.84003 0.91288 1.22899 0.87665 1.00625 0.99599 1.62221 1.09186 1.52705 1.02402 1.22400 1.00852 0.97156 0.91985 1.22702 1.01408 0.96520 0.89428 1.21904 0.83669 0.99801 0.92759 0.89030 1.19963 0.82960 0.80936 0.86122 1.90736 1.49795 1.46525 1.52450 1.45932 1.06672 1.56187 1.27984 1.21375 0.93260 0.96891 0.86736 1.22548 0.91484 0.84479 0.97757 1.22206 1.03018 1.00720 0.95963 1.21282 0.84613 0.99102 0.91663 1.43990 1.03979 0.99997 1.83442 1.19134 0.92521 0.88599 1.38140 0.91467 1.25057 0.97588 0.99040 0.97829 1.70013 1.20005 1.25041 1.39441 0.86301 0.79257 0.83154 0.78089 1.21317 1.21467 1.20482 1.21599 0.97836 0.87169 0.95157 1.23037 0.81740 0.99473 0.98927 1.87830 1.22073 1.26984 1.93442 1.88138 1.18314 1.78271 1.42338 0.91205 0.90834 0.91680 0.93594 0.89404 0.90960 0.90821 0.95263 0.88845 0.93032 0.76305 0.89902 0.90641 0.90718 0.91855 0.94037 0.88581 0.95193 0.93404 0.92055 0.95638 0.93404 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.57 37.16 0.36 -0.75 16 2 C 0.09 0.84 3.42 -26.68 -0.09 0.74 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.02 0.17 4.95 -3.71 -0.02 0.15 16 5 N -0.54 -4.90 4.99 -242.59 -1.21 -6.11 16 6 C 0.02 0.17 9.60 60.07 0.58 0.75 16 7 C 0.03 0.29 4.90 -3.71 -0.02 0.27 16 8 C 0.08 0.99 3.22 -27.84 -0.09 0.90 16 9 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 10 C 0.52 7.95 7.18 -10.99 -0.08 7.87 16 11 O -0.52 -10.31 16.51 -14.27 -0.24 -10.55 16 12 N -0.71 -10.13 5.16 -60.29 -0.31 -10.44 16 13 C 0.14 2.39 4.85 -4.04 -0.02 2.37 16 14 C 0.08 1.42 0.78 -90.47 -0.07 1.35 16 15 C -0.16 -2.65 7.86 37.16 0.29 -2.35 16 16 C 0.16 3.68 4.11 -3.54 -0.01 3.66 16 17 N -0.59 -14.17 2.56 -171.84 -0.44 -14.61 16 18 C -0.25 -6.69 9.65 -15.06 -0.15 -6.83 16 19 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 21 N -0.90 -25.48 11.14 55.49 0.62 -24.86 16 22 Si 0.90 21.07 29.58 -169.99 -5.03 16.04 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.11 2.20 6.73 -3.54 -0.02 2.17 16 27 C 0.05 0.78 6.60 37.31 0.25 1.02 16 28 O -0.38 -6.92 10.17 -35.23 -0.36 -7.28 16 29 O -0.35 -4.79 9.65 -55.06 -0.53 -5.32 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 0.82 8.02 -51.93 -0.42 0.41 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.40 4.84 6.88 -40.82 -0.28 4.56 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.07 1.35 6.11 -51.93 -0.32 1.03 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.55 6.59 -51.93 -0.34 0.21 16 46 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 49 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 52 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -32.17 402.05 -9.77 -41.95 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -9.15 Total: 3.79 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 0.81 Total: 11.34 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -1.34 Total: -56.02 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.13 Total: -23.16 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.17 -9.77 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108024838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.345 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds