Wall clock time and date at job start Wed Apr 1 2020 01:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.50800 * 2 1 4 4 C 1.53095 * 109.53940 * 239.88455 * 2 1 3 5 5 N 1.47021 * 109.25312 * 183.19731 * 4 2 1 6 6 C 1.46901 * 110.99743 * 182.39430 * 5 4 2 7 7 C 1.47016 * 110.75367 * 58.62174 * 5 4 2 8 8 C 1.53096 * 109.25664 * 301.38211 * 7 5 4 9 9 H 1.09007 * 109.54214 * 296.89460 * 8 7 5 10 10 C 1.50696 * 109.50722 * 176.78439 * 8 7 5 11 11 O 1.21282 * 119.99906 * 245.21794 * 10 8 7 12 12 N 1.34770 * 119.99937 * 65.21750 * 10 8 7 13 13 C 1.46505 * 119.99904 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47120 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.55056 * 304.87119 * 14 13 12 16 16 C 1.53289 * 109.51322 * 184.74426 * 14 13 12 17 17 N 1.47150 * 108.38694 * 187.77634 * 16 14 13 18 18 C 1.36938 * 120.98008 * 230.51419 * 17 16 14 19 19 H 1.07999 * 119.99881 * 153.30676 * 18 17 16 20 20 C 1.38812 * 120.00290 * 333.30599 * 18 17 16 21 21 N 1.31627 * 119.99598 * 343.56628 * 20 18 17 22 22 Si 1.86799 * 120.00114 * 163.56240 * 20 18 17 23 23 H 1.48499 * 109.46664 * 90.00462 * 22 20 18 24 24 H 1.48504 * 109.46853 * 209.99946 * 22 20 18 25 25 H 1.48489 * 109.47164 * 330.00259 * 22 20 18 26 26 C 1.47148 * 118.03671 * 50.53011 * 17 16 14 27 27 C 1.53291 * 108.38721 * 309.46801 * 26 17 16 28 28 O 1.42964 * 109.51107 * 64.99647 * 14 13 12 29 29 O 1.43017 * 109.25958 * 56.84671 * 8 7 5 30 30 H 1.08994 * 109.47168 * 299.91894 * 1 2 3 31 31 H 1.09004 * 109.46923 * 59.91679 * 1 2 3 32 32 H 1.08994 * 109.47524 * 179.91306 * 1 2 3 33 33 H 1.08999 * 109.51238 * 303.12888 * 4 2 1 34 34 H 1.09004 * 109.50499 * 63.22270 * 4 2 1 35 35 H 1.09002 * 109.46740 * 60.00017 * 6 5 4 36 36 H 1.08996 * 109.47283 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.47403 * 300.00022 * 6 5 4 38 38 H 1.08992 * 109.50357 * 181.44860 * 7 5 4 39 39 H 1.09003 * 109.50438 * 61.31697 * 7 5 4 40 40 H 0.97002 * 120.00248 * 359.97438 * 12 10 8 41 41 H 1.08997 * 109.47357 * 59.99428 * 13 12 10 42 42 H 1.09005 * 109.46617 * 299.99369 * 13 12 10 43 43 H 1.09007 * 109.46643 * 180.12992 * 15 14 13 44 44 H 1.09000 * 109.46708 * 300.12354 * 15 14 13 45 45 H 1.09000 * 109.47361 * 60.12564 * 15 14 13 46 46 H 1.08995 * 109.68479 * 68.04536 * 16 14 13 47 47 H 1.09005 * 109.71001 * 307.51329 * 16 14 13 48 48 H 0.96999 * 119.99327 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.68062 * 189.74731 * 26 17 16 50 50 H 1.08996 * 109.71169 * 69.21070 * 26 17 16 51 51 H 1.09004 * 109.51422 * 292.37884 * 27 26 17 52 52 H 1.08994 * 109.55599 * 172.24973 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7239 -1.2480 5 7 3.5102 -0.7875 -1.2035 6 6 4.0464 -1.4259 -2.4130 7 6 3.9648 -1.4871 0.0071 8 6 3.4334 -0.7556 1.2425 9 1 3.8527 0.2499 1.2794 10 6 3.8297 -1.5119 2.4843 11 8 2.9779 -2.0188 3.1832 12 7 5.1305 -1.6249 2.8181 13 6 5.5157 -2.3607 4.0250 14 6 7.0386 -2.3388 4.1714 15 6 7.6834 -2.8855 2.8961 16 6 7.4507 -3.2065 5.3660 17 7 8.8915 -3.0204 5.5997 18 6 9.7302 -4.0958 5.7236 19 1 10.7747 -3.9984 5.4671 20 6 9.2378 -5.3112 6.1790 21 7 8.0736 -5.3617 6.7912 22 14 10.2272 -6.8748 5.9230 23 1 11.1272 -7.0867 7.0851 24 1 9.3029 -8.0301 5.7956 25 1 11.0379 -6.7504 4.6852 26 6 9.4045 -1.6446 5.6966 27 6 8.8973 -0.8531 4.4858 28 8 7.4780 -0.9962 4.3909 29 8 2.0075 -0.6758 1.1665 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0016 33 1 1.6347 -1.7345 -1.2756 34 1 1.7276 -0.1802 -2.1389 35 1 3.7479 -0.8513 -3.2898 36 1 5.1343 -1.4596 -2.3543 37 1 3.6549 -2.4401 -2.4927 38 1 5.0544 -1.5000 0.0324 39 1 3.5881 -2.5099 -0.0005 40 1 5.8117 -1.2198 2.2589 41 1 5.1733 -3.3925 3.9464 42 1 5.0598 -1.8920 4.8972 43 1 8.7681 -2.8715 3.0027 44 1 7.3479 -3.9091 2.7294 45 1 7.3935 -2.2654 2.0478 46 1 7.2467 -4.2544 5.1463 47 1 6.8928 -2.9017 6.2515 48 1 7.7294 -6.2111 7.1090 49 1 10.4945 -1.6584 5.6957 50 1 9.0439 -1.1817 6.6151 51 1 9.3634 -1.2371 3.5784 52 1 9.1496 0.2003 4.6069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108024838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:37 Heat of formation + Delta-G solvation = -109.979322 kcal Electronic energy + Delta-G solvation = -31767.295961 eV Core-core repulsion = 27574.138730 eV Total energy + Delta-G solvation = -4193.157231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59243 -40.71775 -39.71495 -36.87285 -36.49921 -35.93909 -34.14248 -33.23378 -33.05724 -30.55552 -29.55747 -28.14480 -27.98125 -27.40460 -25.69055 -24.96614 -23.48527 -22.94271 -21.80160 -21.40070 -20.30935 -18.99685 -18.49731 -17.95358 -17.38674 -17.20125 -16.82564 -16.70142 -16.40758 -16.22776 -16.10390 -15.71548 -15.54237 -15.34509 -15.18237 -14.97134 -14.69539 -14.49745 -13.98342 -13.93285 -13.61266 -13.45352 -13.30919 -13.17545 -13.07299 -12.92078 -12.84099 -12.77328 -12.70210 -12.53147 -12.41469 -12.21376 -12.17140 -11.94439 -11.85550 -11.75123 -11.14362 -10.90541 -10.74611 -10.69087 -10.49073 -10.20118 -9.53111 -8.70650 -7.89335 -5.36506 1.44057 1.45676 1.47665 1.56802 1.70159 2.47841 2.67266 2.78555 2.93097 3.25770 3.49907 3.58412 3.66391 3.78738 3.91742 3.94893 4.01845 4.08851 4.10850 4.22111 4.32639 4.43384 4.47586 4.50786 4.55071 4.57720 4.58594 4.63897 4.68238 4.71386 4.72806 4.79564 4.84667 4.97265 5.01660 5.04059 5.05484 5.13001 5.21957 5.25104 5.29099 5.37504 5.54526 5.62168 5.76116 5.87770 6.04865 6.30096 6.38113 6.47264 7.07402 7.12650 7.76804 8.30951 9.16308 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017321 B = 0.002536 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.170522 B =11040.513850 C =11157.150980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.079 3.921 3 H 0.079 0.921 4 C 0.022 3.978 5 N -0.542 5.542 6 C 0.022 3.978 7 C 0.033 3.967 8 C 0.087 3.913 9 H 0.113 0.887 10 C 0.516 3.484 11 O -0.572 6.572 12 N -0.697 5.697 13 C 0.150 3.850 14 C 0.095 3.905 15 C -0.153 4.153 16 C 0.168 3.832 17 N -0.606 5.606 18 C -0.258 4.258 19 H 0.074 0.926 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.966 3.034 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.265 1.265 26 C 0.101 3.899 27 C 0.053 3.947 28 O -0.385 6.385 29 O -0.387 6.387 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.025 0.975 38 H 0.113 0.887 39 H 0.033 0.967 40 H 0.416 0.584 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.067 0.933 47 H -0.009 1.009 48 H 0.250 0.750 49 H 0.072 0.928 50 H 0.011 0.989 51 H 0.063 0.937 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 13.013 -21.508 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.022 3.978 3 H 0.097 0.903 4 C -0.106 4.106 5 N -0.266 5.266 6 C -0.125 4.125 7 C -0.096 4.096 8 C 0.026 3.974 9 H 0.130 0.870 10 C 0.302 3.698 11 O -0.450 6.450 12 N -0.351 5.351 13 C 0.025 3.975 14 C 0.054 3.946 15 C -0.211 4.211 16 C 0.041 3.959 17 N -0.331 5.331 18 C -0.388 4.388 19 H 0.092 0.908 20 C -0.246 4.246 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.190 1.190 26 C -0.025 4.025 27 C -0.024 4.024 28 O -0.305 6.305 29 O -0.306 6.306 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.043 0.957 38 H 0.131 0.869 39 H 0.051 0.949 40 H 0.255 0.745 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.009 0.991 48 H 0.059 0.941 49 H 0.091 0.909 50 H 0.029 0.971 51 H 0.081 0.919 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.434 13.071 -20.782 25.959 hybrid contribution 0.624 -2.071 0.513 2.223 sum -7.810 11.000 -20.269 24.348 Atomic orbital electron populations 1.21765 0.91286 1.02898 1.03876 1.22519 0.96136 0.95880 0.83239 0.90329 1.22928 0.87454 1.00215 0.99991 1.62275 1.09434 1.52489 1.02452 1.22487 1.01316 0.97101 0.91587 1.22649 1.02329 0.95280 0.89297 1.21867 0.83696 1.00252 0.91602 0.86990 1.20628 0.82417 0.80131 0.86627 1.90713 1.51183 1.48774 1.54350 1.45690 1.06987 1.55488 1.26947 1.21043 0.92474 0.96543 0.87408 1.22168 0.92043 0.83904 0.96510 1.22118 1.01909 1.01069 0.95969 1.21044 0.84199 0.98378 0.92307 1.44245 1.03995 1.01205 1.83619 1.19496 0.93075 0.89375 1.36804 0.90804 1.25811 0.98651 1.01943 0.98190 1.70188 1.21819 1.25135 1.41155 0.85299 0.77737 0.79301 0.78261 1.21374 1.22210 1.18996 1.21830 0.98621 0.85565 0.96438 1.23114 0.80734 1.01028 0.97556 1.87840 1.23114 1.26185 1.93341 1.88106 1.18935 1.79119 1.44480 0.91996 0.87840 0.92741 0.94764 0.86808 0.89306 0.90006 0.95681 0.86935 0.94867 0.74536 0.90983 0.92619 0.91847 0.92538 0.90083 0.91516 0.99110 0.94115 0.90925 0.97120 0.91880 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.57 71.98 0.69 -1.30 16 2 C 0.08 1.40 3.42 30.63 0.10 1.50 16 3 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.02 0.32 4.95 86.31 0.43 0.75 16 5 N -0.54 -8.29 4.99 -921.42 -4.59 -12.88 16 6 C 0.02 0.25 9.60 127.69 1.23 1.48 16 7 C 0.03 0.62 4.90 86.31 0.42 1.04 16 8 C 0.09 2.02 3.22 29.88 0.10 2.11 16 9 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 10 C 0.52 15.76 7.18 87.66 0.63 16.38 16 11 O -0.57 -23.44 16.51 15.92 0.26 -23.18 16 12 N -0.70 -19.04 5.16 -463.05 -2.39 -21.43 16 13 C 0.15 5.20 4.85 86.38 0.42 5.62 16 14 C 0.09 3.42 0.78 -10.69 -0.01 3.41 16 15 C -0.15 -4.73 7.86 71.98 0.57 -4.16 16 16 C 0.17 8.00 4.11 86.35 0.35 8.35 16 17 N -0.61 -29.42 2.56 -697.58 -1.79 -31.21 16 18 C -0.26 -13.60 9.65 84.03 0.81 -12.79 16 19 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 20 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 21 N -0.94 -55.17 11.14 21.65 0.24 -54.93 16 22 Si 0.97 43.88 29.58 68.60 2.03 45.91 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 C 0.10 3.99 6.73 86.35 0.58 4.57 16 27 C 0.05 1.63 6.60 72.08 0.48 2.11 16 28 O -0.39 -13.19 10.17 -148.98 -1.52 -14.70 16 29 O -0.39 -10.34 9.65 -130.02 -1.25 -11.60 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.11 1.60 8.02 -2.39 -0.02 1.59 16 39 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.42 8.82 6.88 -92.71 -0.64 8.18 16 41 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.06 2.14 6.11 -2.38 -0.01 2.12 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.08 1.84 6.59 -2.39 -0.02 1.83 16 46 H 0.07 3.57 6.16 -2.39 -0.01 3.55 16 47 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 48 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 49 H 0.07 2.67 7.96 -2.38 -0.02 2.65 16 50 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.06 1.80 6.25 -2.38 -0.01 1.79 16 52 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -73.27 402.05 -1.53 -74.81 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.26 Total: 22.49 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 7.22 Total: 26.73 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -8.53 Total: -120.45 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -2.51 Total: -49.48 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -73.27 -1.53 -74.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108024838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.173 kcal (2) G-P(sol) polarization free energy of solvation -73.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds