Wall clock time and date at job start Wed Apr 1 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00389 * 2 1 4 4 C 1.52994 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47024 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47242 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47214 * 305.00577 * 6 5 4 8 8 C 1.53002 * 109.46644 * 65.00466 * 6 5 4 9 9 C 1.50696 * 109.47214 * 185.00093 * 6 5 4 10 10 O 1.21284 * 119.99856 * 334.28093 * 9 6 5 11 11 N 1.34776 * 119.99947 * 154.27902 * 9 6 5 12 12 C 1.47072 * 120.88002 * 5.04504 * 11 9 6 13 13 C 1.53702 * 108.27861 * 128.75783 * 12 11 9 14 14 N 1.46897 * 109.25656 * 54.08020 * 13 12 11 15 15 C 1.46895 * 110.99992 * 172.61574 * 14 13 12 16 16 C 1.50708 * 109.47018 * 294.29779 * 15 14 13 17 17 O 1.21300 * 119.99355 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00172 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99751 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00252 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99979 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99651 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99983 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47105 * 60.00266 * 23 21 19 25 25 H 1.48508 * 109.46981 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47328 * 299.99841 * 23 21 19 27 27 C 1.46902 * 111.26855 * 296.75597 * 14 13 12 28 28 C 1.47083 * 120.88150 * 185.31994 * 11 9 6 29 29 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46633 * 299.99649 * 1 2 3 31 31 H 1.09000 * 109.46827 * 59.99379 * 1 2 3 32 32 H 1.09001 * 109.46497 * 60.00026 * 3 2 1 33 33 H 1.08995 * 109.47066 * 300.00812 * 3 2 1 34 34 H 1.09004 * 109.47545 * 300.00241 * 4 3 2 35 35 H 1.09001 * 109.47364 * 60.00571 * 4 3 2 36 36 H 1.08993 * 109.47473 * 300.00493 * 5 4 3 37 37 H 1.09004 * 109.47154 * 60.00323 * 5 4 3 38 38 H 1.09003 * 109.47017 * 174.72959 * 8 6 5 39 39 H 1.09007 * 109.47231 * 294.72233 * 8 6 5 40 40 H 1.08996 * 109.47509 * 54.72630 * 8 6 5 41 41 H 1.09003 * 109.62968 * 248.52013 * 12 11 9 42 42 H 1.09000 * 109.63455 * 9.10159 * 12 11 9 43 43 H 1.09003 * 109.64142 * 294.07532 * 13 12 11 44 44 H 1.08995 * 109.42259 * 173.94626 * 13 12 11 45 45 H 1.08994 * 109.47791 * 54.29351 * 15 14 13 46 46 H 1.09003 * 109.47500 * 174.30332 * 15 14 13 47 47 H 0.97002 * 120.00221 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99419 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.49755 * 303.15046 * 27 14 13 50 50 H 1.08996 * 109.51500 * 183.07817 * 27 14 13 51 51 H 1.08999 * 109.62588 * 350.90145 * 28 11 9 52 52 H 1.09002 * 109.62786 * 111.47558 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5822 0.0013 6 6 5.6831 2.4614 0.0026 7 1 5.9980 1.8450 0.8445 8 6 6.1444 1.8136 -1.3045 9 6 6.2956 3.8327 0.1271 10 8 5.6809 4.8078 -0.2501 11 7 7.5263 3.9754 0.6576 12 6 8.3331 2.8002 1.0195 13 6 9.7216 2.9527 0.3782 14 7 10.2974 4.2458 0.7711 15 6 11.6924 4.3582 0.3249 16 6 12.5364 3.3450 1.0545 17 8 12.0257 2.6021 1.8661 18 7 13.8585 3.2645 0.8054 19 6 14.6261 2.3424 1.4688 20 1 14.1715 1.6809 2.1914 21 6 15.9892 2.2597 1.2123 22 7 16.5425 3.0650 0.3335 23 14 17.0350 1.0029 2.1158 24 1 16.5312 -0.3629 1.8223 25 1 18.4455 1.1171 1.6653 26 1 16.9596 1.2550 3.5772 27 6 9.4910 5.3642 0.2644 28 6 8.0956 5.3105 0.8955 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8462 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8568 0.6437 0.8908 35 1 3.8575 0.6435 -0.8892 36 1 3.8366 3.1234 -0.8886 37 1 3.8359 3.1229 0.8913 38 1 7.2337 1.8125 -1.3449 39 1 5.7781 0.7879 -1.3508 40 1 5.7501 2.3787 -2.1491 41 1 8.4316 2.7434 2.1036 42 1 7.8526 1.8965 0.6449 43 1 9.6306 2.9098 -0.7072 44 1 10.3699 2.1466 0.7213 45 1 11.7471 4.1717 -0.7476 46 1 12.0626 5.3609 0.5387 47 1 14.2669 3.8589 0.1567 48 1 17.4941 3.0075 0.1547 49 1 9.4031 5.2878 -0.8194 50 1 9.9718 6.3071 0.5247 51 1 7.4577 6.0672 0.4387 52 1 8.1715 5.4904 1.9679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113507296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:32 Heat of formation + Delta-G solvation = -117.307821 kcal Electronic energy + Delta-G solvation = -30068.862685 eV Core-core repulsion = 25875.387667 eV Total energy + Delta-G solvation = -4193.475018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50270 -38.82158 -38.33294 -37.33566 -35.79218 -34.53642 -33.79655 -31.90978 -31.29174 -30.76490 -28.82993 -27.50999 -26.12891 -25.68182 -24.32444 -23.79241 -23.16327 -21.61865 -20.55644 -19.29355 -18.65233 -17.91255 -17.39485 -16.71001 -16.56433 -16.23889 -15.91904 -15.44873 -15.25562 -15.08353 -15.01459 -14.82986 -14.53169 -14.13298 -13.92826 -13.84712 -13.64176 -13.58290 -13.19991 -12.67474 -12.52742 -12.42055 -12.21094 -12.05305 -11.94089 -11.68160 -11.60869 -11.54899 -11.49039 -11.28244 -11.17880 -11.13206 -11.06589 -10.89848 -10.81999 -10.46490 -10.24373 -10.04845 -9.70102 -9.49807 -8.86490 -8.39494 -8.01774 -7.91882 -6.44733 -3.85792 2.53468 2.86526 3.17687 3.24052 3.27924 3.38253 3.85198 3.92330 4.20255 4.29516 4.46379 4.55885 4.77564 4.82100 4.83941 4.94042 4.95362 4.99322 5.03314 5.06733 5.16101 5.20535 5.21790 5.23413 5.28385 5.32371 5.34899 5.40460 5.47682 5.50331 5.60760 5.63653 5.71568 5.77612 5.78034 5.85171 5.87688 5.98942 6.01772 6.13499 6.16956 6.22530 6.47382 6.77204 7.11848 7.28211 7.38730 7.51989 8.02587 8.08891 8.57846 9.14507 9.50702 10.01876 10.72756 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.001850 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.639270 B =15127.568995 C =16238.287445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.110 4.110 7 H 0.095 0.905 8 C -0.145 4.145 9 C 0.520 3.480 10 O -0.549 6.549 11 N -0.612 5.612 12 C 0.112 3.888 13 C 0.039 3.961 14 N -0.514 5.514 15 C 0.046 3.954 16 C 0.443 3.557 17 O -0.579 6.579 18 N -0.562 5.562 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.041 3.959 28 C 0.118 3.882 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.027 0.973 44 H 0.116 0.884 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.034 0.966 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.475 -0.273 -3.517 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.016 4.016 4 C -0.157 4.157 5 C -0.135 4.135 6 C -0.131 4.131 7 H 0.114 0.886 8 C -0.203 4.203 9 C 0.309 3.691 10 O -0.427 6.427 11 N -0.345 5.345 12 C -0.011 4.011 13 C -0.089 4.089 14 N -0.239 5.239 15 C -0.085 4.085 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.088 4.088 28 C -0.005 4.005 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.134 0.866 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.052 0.948 50 H 0.104 0.896 51 H 0.111 0.889 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.817 -0.378 -2.725 24.969 hybrid contribution 0.858 0.053 -0.836 1.199 sum -23.959 -0.324 -3.562 24.224 Atomic orbital electron populations 1.22738 0.81041 1.02745 0.99978 1.87869 1.19715 1.28269 1.95441 1.22558 0.94259 0.84485 1.00304 1.21576 0.92871 0.97560 1.03728 1.21311 0.92406 0.96173 1.03592 1.21306 0.96537 0.94265 1.01007 0.88641 1.21832 1.01806 1.01110 0.95540 1.20635 0.80772 0.91251 0.76464 1.90658 1.61755 1.41138 1.49170 1.48278 1.16028 1.08026 1.62151 1.22066 0.90510 0.87193 1.01320 1.22726 0.95486 0.94034 0.96670 1.61500 1.00856 1.01722 1.59838 1.21852 0.88609 1.00598 0.97412 1.19707 0.83068 0.87452 0.86955 1.90474 1.72173 1.45952 1.37752 1.41865 1.06067 1.33753 1.38168 1.19649 0.89561 1.13307 1.20490 0.87913 1.25264 0.97215 0.98265 0.97113 1.69606 1.12949 1.38099 1.33558 0.85917 0.78281 0.80438 0.79576 1.19921 1.20988 1.19877 1.22498 0.93709 0.95446 0.97154 1.21692 0.93195 0.84427 1.01183 0.89631 0.94083 0.94099 0.93280 0.93224 0.90896 0.90611 0.90638 0.91425 0.91909 0.90955 0.91855 0.90005 0.89448 0.95479 0.86603 0.93470 0.89196 0.77483 0.91794 0.94754 0.89557 0.88927 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.62 10.70 -35.23 -0.38 -4.00 16 3 C 0.06 0.47 5.94 37.15 0.22 0.69 16 4 C -0.12 -0.91 5.34 -26.73 -0.14 -1.05 16 5 C -0.10 -0.83 4.14 -26.73 -0.11 -0.94 16 6 C -0.11 -1.02 1.86 -91.77 -0.17 -1.19 16 7 H 0.10 0.78 6.77 -51.93 -0.35 0.43 16 8 C -0.15 -1.22 8.50 37.16 0.32 -0.91 16 9 C 0.52 6.53 6.80 -10.99 -0.07 6.46 16 10 O -0.55 -8.53 15.66 5.55 0.09 -8.44 16 11 N -0.61 -7.63 3.00 -172.18 -0.52 -8.14 16 12 C 0.11 1.36 6.15 -3.37 -0.02 1.34 16 13 C 0.04 0.59 5.27 -3.46 -0.02 0.57 16 14 N -0.51 -8.11 4.37 -235.47 -1.03 -9.14 16 15 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 16 C 0.44 9.96 7.44 -10.98 -0.08 9.88 16 17 O -0.58 -14.69 13.91 5.54 0.08 -14.61 16 18 N -0.56 -13.78 5.29 -10.96 -0.06 -13.84 16 19 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 23 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 28 C 0.12 1.46 6.61 -3.60 -0.02 1.43 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.57 6.69 -51.93 -0.35 0.22 16 36 H 0.07 0.71 8.03 -51.93 -0.42 0.29 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.56 7.21 -51.93 -0.37 0.18 16 39 H 0.07 0.50 6.83 -51.93 -0.35 0.14 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.09 0.86 4.95 -51.93 -0.26 0.60 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.12 2.08 5.76 -51.93 -0.30 1.78 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 47 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 51 H 0.09 1.15 7.04 -51.93 -0.37 0.78 16 52 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -32.19 410.60 -8.13 -40.32 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.92 Total: 8.31 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 0.72 Total: 11.07 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.88 Total: -54.45 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.21 Total: -27.05 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.19 -8.13 -40.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113507296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.987 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds