Wall clock time and date at job start Wed Apr 1 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00389 * 2 1 4 4 C 1.52994 * 109.47198 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47024 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47242 * 179.97438 * 5 4 3 7 7 H 1.08995 * 109.47214 * 305.00577 * 6 5 4 8 8 C 1.53002 * 109.46644 * 65.00466 * 6 5 4 9 9 C 1.50696 * 109.47214 * 185.00093 * 6 5 4 10 10 O 1.21284 * 119.99856 * 334.28093 * 9 6 5 11 11 N 1.34776 * 119.99947 * 154.27902 * 9 6 5 12 12 C 1.47072 * 120.88002 * 5.04504 * 11 9 6 13 13 C 1.53702 * 108.27861 * 128.75783 * 12 11 9 14 14 N 1.46897 * 109.25656 * 54.08020 * 13 12 11 15 15 C 1.46895 * 110.99992 * 172.61574 * 14 13 12 16 16 C 1.50708 * 109.47018 * 294.29779 * 15 14 13 17 17 O 1.21300 * 119.99355 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00172 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99751 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00252 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99979 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99651 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99983 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47105 * 60.00266 * 23 21 19 25 25 H 1.48508 * 109.46981 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47328 * 299.99841 * 23 21 19 27 27 C 1.46902 * 111.26855 * 296.75597 * 14 13 12 28 28 C 1.47083 * 120.88150 * 185.31994 * 11 9 6 29 29 H 1.09004 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46633 * 299.99649 * 1 2 3 31 31 H 1.09000 * 109.46827 * 59.99379 * 1 2 3 32 32 H 1.09001 * 109.46497 * 60.00026 * 3 2 1 33 33 H 1.08995 * 109.47066 * 300.00812 * 3 2 1 34 34 H 1.09004 * 109.47545 * 300.00241 * 4 3 2 35 35 H 1.09001 * 109.47364 * 60.00571 * 4 3 2 36 36 H 1.08993 * 109.47473 * 300.00493 * 5 4 3 37 37 H 1.09004 * 109.47154 * 60.00323 * 5 4 3 38 38 H 1.09003 * 109.47017 * 174.72959 * 8 6 5 39 39 H 1.09007 * 109.47231 * 294.72233 * 8 6 5 40 40 H 1.08996 * 109.47509 * 54.72630 * 8 6 5 41 41 H 1.09003 * 109.62968 * 248.52013 * 12 11 9 42 42 H 1.09000 * 109.63455 * 9.10159 * 12 11 9 43 43 H 1.09003 * 109.64142 * 294.07532 * 13 12 11 44 44 H 1.08995 * 109.42259 * 173.94626 * 13 12 11 45 45 H 1.08994 * 109.47791 * 54.29351 * 15 14 13 46 46 H 1.09003 * 109.47500 * 174.30332 * 15 14 13 47 47 H 0.97002 * 120.00221 * 0.02562 * 18 16 15 48 48 H 0.97002 * 119.99419 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.49755 * 303.15046 * 27 14 13 50 50 H 1.08996 * 109.51500 * 183.07817 * 27 14 13 51 51 H 1.08999 * 109.62588 * 350.90145 * 28 11 9 52 52 H 1.09002 * 109.62786 * 111.47558 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1579 2.5822 0.0013 6 6 5.6831 2.4614 0.0026 7 1 5.9980 1.8450 0.8445 8 6 6.1444 1.8136 -1.3045 9 6 6.2956 3.8327 0.1271 10 8 5.6809 4.8078 -0.2501 11 7 7.5263 3.9754 0.6576 12 6 8.3331 2.8002 1.0195 13 6 9.7216 2.9527 0.3782 14 7 10.2974 4.2458 0.7711 15 6 11.6924 4.3582 0.3249 16 6 12.5364 3.3450 1.0545 17 8 12.0257 2.6021 1.8661 18 7 13.8585 3.2645 0.8054 19 6 14.6261 2.3424 1.4688 20 1 14.1715 1.6809 2.1914 21 6 15.9892 2.2597 1.2123 22 7 16.5425 3.0650 0.3335 23 14 17.0350 1.0029 2.1158 24 1 16.5312 -0.3629 1.8223 25 1 18.4455 1.1171 1.6653 26 1 16.9596 1.2550 3.5772 27 6 9.4910 5.3642 0.2644 28 6 8.0956 5.3105 0.8955 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6887 1.8462 0.8900 33 1 1.6886 1.8463 -0.8899 34 1 3.8568 0.6437 0.8908 35 1 3.8575 0.6435 -0.8892 36 1 3.8366 3.1234 -0.8886 37 1 3.8359 3.1229 0.8913 38 1 7.2337 1.8125 -1.3449 39 1 5.7781 0.7879 -1.3508 40 1 5.7501 2.3787 -2.1491 41 1 8.4316 2.7434 2.1036 42 1 7.8526 1.8965 0.6449 43 1 9.6306 2.9098 -0.7072 44 1 10.3699 2.1466 0.7213 45 1 11.7471 4.1717 -0.7476 46 1 12.0626 5.3609 0.5387 47 1 14.2669 3.8589 0.1567 48 1 17.4941 3.0075 0.1547 49 1 9.4031 5.2878 -0.8194 50 1 9.9718 6.3071 0.5247 51 1 7.4577 6.0672 0.4387 52 1 8.1715 5.4904 1.9679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113507296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:31 Heat of formation + Delta-G solvation = -140.026009 kcal Electronic energy + Delta-G solvation = -30069.847820 eV Core-core repulsion = 25875.387667 eV Total energy + Delta-G solvation = -4194.460153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52257 -40.32596 -39.03062 -38.64373 -36.57418 -36.04772 -35.39686 -33.24577 -32.71930 -31.70405 -30.13443 -28.06945 -27.46695 -26.53494 -25.66369 -24.95920 -24.09690 -22.47793 -21.44877 -21.03159 -19.88830 -19.59686 -18.36759 -17.78338 -17.34739 -17.15086 -16.95309 -16.60565 -16.46835 -16.30117 -16.12080 -15.93016 -15.74212 -15.37379 -15.28582 -15.19351 -14.83775 -14.45686 -14.19270 -13.92205 -13.49079 -13.47645 -13.24861 -13.14522 -12.98163 -12.83244 -12.74345 -12.67129 -12.41112 -12.36270 -12.32480 -12.24870 -12.13984 -12.09860 -12.07274 -11.73366 -11.57300 -11.41332 -10.69520 -10.60239 -10.32297 -9.98012 -9.75878 -9.22100 -8.43809 -5.92088 1.41634 1.43853 1.54156 1.55720 1.90944 2.08228 2.30081 2.72007 2.82425 3.23368 3.37771 3.43423 3.76330 3.88199 3.92043 3.98684 4.14270 4.16205 4.19730 4.24180 4.27239 4.33785 4.44093 4.47076 4.49937 4.51760 4.53795 4.53903 4.59966 4.64089 4.69687 4.72794 4.79482 4.84950 4.86044 4.93247 4.95520 4.98180 5.04428 5.16033 5.33358 5.37149 5.43373 5.44821 5.82340 6.05333 6.13725 6.23421 6.38491 6.63178 7.10110 7.15741 7.59688 8.14666 8.73253 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.001850 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.639270 B =15127.568995 C =16238.287445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.058 3.942 4 C -0.113 4.113 5 C -0.089 4.089 6 C -0.107 4.107 7 H 0.111 0.889 8 C -0.142 4.142 9 C 0.518 3.482 10 O -0.581 6.581 11 N -0.612 5.612 12 C 0.121 3.879 13 C 0.041 3.959 14 N -0.530 5.530 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.610 6.610 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.082 0.918 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.047 3.953 28 C 0.117 3.883 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.034 0.966 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.395 0.605 48 H 0.276 0.724 49 H 0.037 0.963 50 H 0.104 0.896 51 H 0.093 0.907 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.225 -0.571 -3.785 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.019 4.019 4 C -0.150 4.150 5 C -0.127 4.127 6 C -0.128 4.128 7 H 0.129 0.871 8 C -0.200 4.200 9 C 0.308 3.692 10 O -0.461 6.461 11 N -0.345 5.345 12 C -0.002 4.002 13 C -0.087 4.087 14 N -0.255 5.255 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.496 6.496 18 N -0.212 5.212 19 C -0.460 4.460 20 H 0.100 0.900 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.081 4.081 28 C -0.005 4.005 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.052 0.948 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.129 0.871 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.122 0.878 51 H 0.111 0.889 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.578 -0.666 -3.002 25.763 hybrid contribution 0.998 0.179 -0.749 1.261 sum -24.581 -0.487 -3.751 24.870 Atomic orbital electron populations 1.22914 0.79693 1.03753 1.00752 1.87825 1.21338 1.28971 1.95601 1.22606 0.94290 0.84236 1.00745 1.21498 0.92846 0.96709 1.03967 1.21218 0.91957 0.96678 1.02862 1.21365 0.96748 0.92514 1.02147 0.87083 1.21828 1.01517 1.01984 0.94634 1.21193 0.80409 0.92120 0.75464 1.90643 1.62463 1.42510 1.50523 1.48345 1.16168 1.08072 1.61909 1.21996 0.89283 0.88140 1.00734 1.22621 0.96171 0.92795 0.97131 1.61484 1.00518 1.02916 1.60622 1.21720 0.88647 0.99542 0.97369 1.20666 0.82725 0.87417 0.86132 1.90456 1.72716 1.47306 1.39088 1.41933 1.06815 1.33856 1.38570 1.19633 0.90595 1.14452 1.21363 0.90042 1.26009 0.97763 0.99837 0.97652 1.69672 1.13375 1.38994 1.34204 0.85008 0.77009 0.78132 0.78319 1.19646 1.19792 1.19777 1.22525 0.93467 0.94977 0.97176 1.21692 0.92935 0.84626 1.01268 0.88605 0.93337 0.93296 0.92878 0.92793 0.90672 0.90277 0.91579 0.91995 0.92289 0.89049 0.92504 0.90705 0.86875 0.94798 0.89820 0.91808 0.87083 0.77142 0.91426 0.94521 0.87815 0.88856 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.17 10.70 -148.98 -1.59 -8.76 16 3 C 0.06 0.82 5.94 71.98 0.43 1.25 16 4 C -0.11 -1.53 5.34 30.59 0.16 -1.37 16 5 C -0.09 -1.42 4.14 30.60 0.13 -1.29 16 6 C -0.11 -1.80 1.86 -11.54 -0.02 -1.82 16 7 H 0.11 1.54 6.77 -2.39 -0.02 1.53 16 8 C -0.14 -2.12 8.50 71.98 0.61 -1.51 16 9 C 0.52 12.37 6.80 87.66 0.60 12.96 16 10 O -0.58 -17.63 15.66 -3.04 -0.05 -17.67 16 11 N -0.61 -14.43 3.00 -817.05 -2.45 -16.89 16 12 C 0.12 2.79 6.15 86.51 0.53 3.33 16 13 C 0.04 1.20 5.27 86.54 0.46 1.66 16 14 N -0.53 -16.07 4.37 -898.88 -3.93 -20.00 16 15 C 0.06 1.92 5.45 85.56 0.47 2.38 16 16 C 0.44 20.06 7.44 87.66 0.65 20.71 16 17 O -0.61 -31.51 13.91 -3.09 -0.04 -31.55 16 18 N -0.57 -28.51 5.29 -306.97 -1.62 -30.13 16 19 C -0.33 -18.26 9.68 84.04 0.81 -17.44 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 23 Si 0.99 42.13 29.55 68.60 2.03 44.16 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.05 1.11 5.62 86.38 0.49 1.59 16 28 C 0.12 2.75 6.61 86.35 0.57 3.32 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.03 6.69 -2.39 -0.02 1.01 16 36 H 0.07 1.19 8.03 -2.39 -0.02 1.17 16 37 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.06 0.93 7.21 -2.39 -0.02 0.91 16 39 H 0.09 1.03 6.83 -2.38 -0.02 1.01 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.11 1.99 4.95 -2.39 -0.01 1.98 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 3.03 5.76 -2.39 -0.01 3.01 16 45 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 46 H 0.11 3.21 7.97 -2.39 -0.02 3.19 16 47 H 0.39 18.77 7.90 -92.71 -0.73 18.04 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.10 2.10 7.99 -2.39 -0.02 2.08 16 51 H 0.09 2.21 7.04 -2.39 -0.02 2.19 16 52 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.46 410.60 0.40 -69.06 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.18 Total: 35.43 kcal Atomic # 6 Polarization: 17.49 SS G_CDS: 7.60 Total: 25.08 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -7.72 Total: -115.74 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -1.69 Total: -57.99 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.46 0.40 -69.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113507296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.966 kcal (2) G-P(sol) polarization free energy of solvation -69.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds