Wall clock time and date at job start Wed Apr 1 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00739 * 2 1 4 4 C 1.53001 * 109.47390 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46823 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47192 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46872 * 54.99822 * 6 5 4 8 8 C 1.52999 * 109.47003 * 295.00362 * 6 5 4 9 9 C 1.50695 * 109.47218 * 175.00044 * 6 5 4 10 10 O 1.21276 * 120.00118 * 21.50060 * 9 6 5 11 11 N 1.34783 * 119.99809 * 201.50237 * 9 6 5 12 12 C 1.47077 * 120.88299 * 4.25775 * 11 9 6 13 13 C 1.53695 * 108.27588 * 128.75313 * 12 11 9 14 14 N 1.46897 * 109.25650 * 54.08797 * 13 12 11 15 15 C 1.46898 * 111.00006 * 172.60866 * 14 13 12 16 16 C 1.50707 * 109.47051 * 294.29683 * 15 14 13 17 17 O 1.21295 * 119.99400 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99884 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99821 * 180.02562 * 18 16 15 20 20 H 1.08006 * 119.99601 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00250 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99805 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00256 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46855 * 60.00355 * 23 21 19 25 25 H 1.48502 * 109.47253 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47297 * 300.00753 * 23 21 19 27 27 C 1.46902 * 111.26671 * 296.75117 * 14 13 12 28 28 C 1.47080 * 120.88088 * 184.53474 * 11 9 6 29 29 H 1.08997 * 109.47046 * 300.00770 * 1 2 3 30 30 H 1.09000 * 109.46361 * 59.99950 * 1 2 3 31 31 H 1.08991 * 109.47287 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46685 * 59.99516 * 3 2 1 33 33 H 1.09002 * 109.46488 * 299.99734 * 3 2 1 34 34 H 1.08992 * 109.47151 * 299.99600 * 4 3 2 35 35 H 1.08997 * 109.46954 * 59.99597 * 4 3 2 36 36 H 1.09005 * 109.47433 * 300.00000 * 5 4 3 37 37 H 1.09003 * 109.47198 * 59.99867 * 5 4 3 38 38 H 1.09000 * 109.47427 * 65.24234 * 8 6 5 39 39 H 1.09001 * 109.46820 * 185.24533 * 8 6 5 40 40 H 1.09004 * 109.47084 * 305.24150 * 8 6 5 41 41 H 1.08995 * 109.63160 * 248.52772 * 12 11 9 42 42 H 1.09002 * 109.62765 * 9.10799 * 12 11 9 43 43 H 1.09003 * 109.65237 * 294.08106 * 13 12 11 44 44 H 1.09006 * 109.41976 * 173.94804 * 13 12 11 45 45 H 1.08995 * 109.47381 * 54.29904 * 15 14 13 46 46 H 1.09004 * 109.47117 * 174.30030 * 15 14 13 47 47 H 0.96990 * 119.99919 * 359.97438 * 18 16 15 48 48 H 0.96996 * 119.99858 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.49519 * 303.14799 * 27 14 13 50 50 H 1.08994 * 109.49622 * 183.06447 * 27 14 13 51 51 H 1.09001 * 109.62663 * 350.90099 * 28 11 9 52 52 H 1.08997 * 109.62486 * 111.47401 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6832 2.4613 0.0013 7 1 5.9994 1.8443 -0.8397 8 6 6.1424 1.8143 1.3095 9 6 6.2958 3.8325 -0.1232 10 8 5.6519 4.8142 0.1808 11 7 7.5594 3.9677 -0.5723 12 6 8.3256 2.8002 -1.0339 13 6 8.8973 3.1182 -2.4247 14 7 9.6577 4.3734 -2.3605 15 6 10.3664 4.6247 -3.6225 16 6 11.4215 3.5678 -3.8251 17 8 11.5682 2.6913 -2.9996 18 7 12.2020 3.5967 -4.9235 19 6 13.1615 2.6350 -5.1081 20 1 13.2921 1.8545 -4.3731 21 6 13.9658 2.6644 -6.2407 22 7 13.8071 3.6144 -7.1348 23 14 15.2736 1.3545 -6.4919 24 1 14.6307 0.0167 -6.5431 25 1 15.9905 1.6088 -7.7673 26 1 16.2394 1.3967 -5.3647 27 6 8.7892 5.5052 -2.0102 28 6 8.2108 5.2860 -0.6082 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6887 1.8463 0.8899 33 1 1.6888 1.8463 -0.8901 34 1 3.8568 0.6438 0.8908 35 1 3.8575 0.6433 -0.8891 36 1 3.8367 3.1226 -0.8905 37 1 3.8360 3.1237 0.8895 38 1 5.7756 0.7889 1.3561 39 1 7.2316 1.8129 1.3513 40 1 5.7471 2.3803 2.1531 41 1 9.1393 2.5976 -0.3376 42 1 7.6687 1.9326 -1.0963 43 1 8.0824 3.2228 -3.1410 44 1 9.5568 2.3091 -2.7390 45 1 9.6575 4.5937 -4.4497 46 1 10.8382 5.6066 -3.5849 47 1 12.0844 4.2975 -5.5837 48 1 14.3689 3.6352 -7.9252 49 1 7.9757 5.5765 -2.7322 50 1 9.3700 6.4273 -2.0239 51 1 7.4780 6.0625 -0.3888 52 1 9.0136 5.3177 0.1283 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113507297.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:35 Heat of formation + Delta-G solvation = -139.179491 kcal Electronic energy + Delta-G solvation = -30079.896853 eV Core-core repulsion = 25885.473408 eV Total energy + Delta-G solvation = -4194.423445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51466 -40.32906 -39.03473 -38.64706 -36.56580 -36.04969 -35.39944 -33.24785 -32.68361 -31.74787 -30.11156 -28.05985 -27.44268 -26.55338 -25.66462 -24.96699 -24.12706 -22.47114 -21.38551 -21.02568 -19.89240 -19.67825 -18.34399 -17.78207 -17.33720 -17.17457 -16.97407 -16.60268 -16.50364 -16.36498 -16.07469 -15.89352 -15.55728 -15.41692 -15.30206 -15.26814 -14.83296 -14.38926 -14.27651 -13.88562 -13.49864 -13.47964 -13.23345 -13.17079 -12.96404 -12.80857 -12.77741 -12.64741 -12.47655 -12.41200 -12.31943 -12.21620 -12.14209 -12.09421 -12.04480 -11.70128 -11.55437 -11.41466 -10.68657 -10.60584 -10.32361 -9.98176 -9.76072 -9.22320 -8.43921 -5.92228 1.41502 1.43715 1.54080 1.57002 1.90938 2.08038 2.29927 2.71833 2.81597 3.23180 3.37362 3.44363 3.77211 3.87618 3.89986 3.98797 4.13324 4.14569 4.19584 4.25318 4.26621 4.33079 4.43318 4.47818 4.49300 4.51368 4.53363 4.56905 4.60124 4.65646 4.70120 4.72994 4.82273 4.84843 4.86940 4.93281 4.97045 4.99667 5.05185 5.16018 5.34010 5.37601 5.43202 5.44584 5.82180 6.05169 6.13632 6.22886 6.38775 6.63016 7.10598 7.15567 7.59523 8.14473 8.73140 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.001923 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.557792 B =14555.987279 C =15643.751072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.089 4.089 6 C -0.108 4.108 7 H 0.110 0.890 8 C -0.140 4.140 9 C 0.518 3.482 10 O -0.582 6.582 11 N -0.612 5.612 12 C 0.122 3.878 13 C 0.040 3.960 14 N -0.530 5.530 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.610 6.610 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.082 0.918 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.047 3.953 28 C 0.118 3.882 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.033 0.967 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.395 0.605 48 H 0.276 0.724 49 H 0.037 0.963 50 H 0.104 0.896 51 H 0.093 0.907 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.698 -1.301 12.523 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.019 4.019 4 C -0.150 4.150 5 C -0.127 4.127 6 C -0.129 4.129 7 H 0.128 0.872 8 C -0.197 4.197 9 C 0.308 3.692 10 O -0.462 6.462 11 N -0.344 5.344 12 C -0.001 4.001 13 C -0.089 4.089 14 N -0.255 5.255 15 C -0.073 4.073 16 C 0.231 3.769 17 O -0.495 6.495 18 N -0.212 5.212 19 C -0.460 4.460 20 H 0.100 0.900 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.082 4.082 28 C -0.005 4.005 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.132 0.868 43 H 0.051 0.949 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.129 0.871 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.122 0.878 51 H 0.111 0.889 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.376 -1.531 13.418 25.284 hybrid contribution 0.104 0.367 -1.473 1.522 sum -21.271 -1.164 11.945 24.423 Atomic orbital electron populations 1.22910 0.79699 1.03760 1.00742 1.87824 1.21333 1.28956 1.95599 1.22610 0.94327 0.84238 1.00714 1.21499 0.92825 0.96728 1.03967 1.21218 0.92137 0.96596 1.02793 1.21379 0.96626 0.92573 1.02296 0.87206 1.21790 1.01797 1.01831 0.94313 1.21184 0.80545 0.92163 0.75351 1.90642 1.61728 1.41914 1.51921 1.48341 1.13507 1.09397 1.63156 1.22012 0.95753 0.87939 0.94359 1.22644 0.95835 0.93494 0.96912 1.61490 1.29257 1.03123 1.31652 1.21722 0.95239 0.98572 0.91754 1.20665 0.85268 0.88486 0.82517 1.90454 1.72969 1.40618 1.45506 1.41933 1.31629 1.27195 1.20434 1.19631 1.12362 1.07489 1.06516 0.90035 1.26015 1.00454 0.99942 0.94909 1.69670 1.41265 1.33915 1.11412 0.85007 0.77750 0.78016 0.77686 1.19616 1.19808 1.19773 1.22527 0.95171 0.94357 0.96095 1.21686 0.96986 0.85095 0.96723 0.93226 0.93435 0.88583 0.92691 0.93049 0.90082 0.90844 0.92288 0.91488 0.89151 0.91950 0.92444 0.90591 0.86841 0.94865 0.89816 0.91830 0.87081 0.77147 0.91428 0.94515 0.87812 0.88869 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.30 10.70 -148.98 -1.59 -8.89 16 3 C 0.06 0.84 5.94 71.98 0.43 1.27 16 4 C -0.11 -1.56 5.34 30.59 0.16 -1.40 16 5 C -0.09 -1.45 4.08 30.59 0.12 -1.33 16 6 C -0.11 -1.82 1.91 -11.54 -0.02 -1.84 16 7 H 0.11 1.56 6.24 -2.39 -0.01 1.54 16 8 C -0.14 -1.97 8.77 71.98 0.63 -1.34 16 9 C 0.52 12.33 6.85 87.65 0.60 12.93 16 10 O -0.58 -17.64 15.60 -3.02 -0.05 -17.69 16 11 N -0.61 -14.35 3.00 -817.07 -2.45 -16.80 16 12 C 0.12 2.79 6.08 86.50 0.53 3.32 16 13 C 0.04 1.16 5.27 86.54 0.46 1.61 16 14 N -0.53 -16.07 4.37 -898.88 -3.93 -20.00 16 15 C 0.06 1.92 5.45 85.56 0.47 2.38 16 16 C 0.44 20.07 7.44 87.66 0.65 20.73 16 17 O -0.61 -31.50 13.91 -3.08 -0.04 -31.55 16 18 N -0.57 -28.55 5.29 -306.97 -1.62 -30.17 16 19 C -0.33 -18.24 9.68 84.04 0.81 -17.43 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 22 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 23 Si 0.99 42.16 29.55 68.60 2.03 44.19 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.05 1.11 5.62 86.38 0.49 1.59 16 28 C 0.12 2.75 6.61 86.35 0.57 3.32 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 1.04 6.68 -2.39 -0.02 1.03 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 37 H 0.07 1.20 8.05 -2.39 -0.02 1.19 16 38 H 0.09 0.95 6.83 -2.39 -0.02 0.94 16 39 H 0.06 0.90 7.73 -2.39 -0.02 0.89 16 40 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.11 1.96 5.51 -2.39 -0.01 1.95 16 43 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 3.03 5.76 -2.38 -0.01 3.02 16 45 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 46 H 0.11 3.21 7.97 -2.38 -0.02 3.19 16 47 H 0.39 18.79 7.90 -92.72 -0.73 18.06 16 48 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 49 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.10 2.10 7.99 -2.39 -0.02 2.08 16 51 H 0.09 2.21 7.04 -2.39 -0.02 2.19 16 52 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -69.54 411.34 0.41 -69.13 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.18 Total: 35.44 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 7.61 Total: 25.12 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -7.72 Total: -115.75 kcal Atomic # 8 Polarization: -56.44 SS G_CDS: -1.68 Total: -58.12 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -69.54 0.41 -69.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113507297.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.045 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds