Wall clock time and date at job start Wed Apr 1 2020 00:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46859 * 2 1 4 4 O 1.42904 * 109.47496 * 119.99409 * 2 1 3 5 5 C 1.42895 * 114.00490 * 150.00270 * 4 2 1 6 6 C 1.52992 * 109.47606 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.50703 * 109.47428 * 294.29982 * 14 13 12 16 16 O 1.21299 * 119.99823 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00417 * 179.97438 * 15 14 13 18 18 C 1.37097 * 119.99982 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99638 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99533 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47113 * 89.99976 * 22 20 18 24 24 H 1.48507 * 109.46646 * 209.99849 * 22 20 18 25 25 H 1.48497 * 109.47312 * 329.99791 * 22 20 18 26 26 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 27 27 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 28 28 H 1.08999 * 109.47598 * 299.99901 * 1 2 3 29 29 H 1.09003 * 109.47338 * 60.00451 * 1 2 3 30 30 H 1.09006 * 109.46571 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47598 * 240.00099 * 2 1 3 32 32 H 1.09000 * 109.47241 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46777 * 299.99602 * 3 2 1 34 34 H 1.08999 * 109.46935 * 59.99692 * 3 2 1 35 35 H 1.09002 * 109.47063 * 60.00241 * 5 4 2 36 36 H 1.09001 * 109.46798 * 300.00508 * 5 4 2 37 37 H 1.09002 * 109.47103 * 59.99788 * 6 5 4 38 38 H 1.08998 * 109.46862 * 300.00600 * 6 5 4 39 39 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 40 40 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 41 41 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 42 42 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 43 43 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 44 44 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 45 45 H 1.08994 * 109.47420 * 54.30050 * 14 13 12 46 46 H 1.08997 * 109.47407 * 174.29955 * 14 13 12 47 47 H 0.97000 * 119.99497 * 0.02562 * 17 15 14 48 48 H 0.97005 * 119.99850 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.49120 * 303.14081 * 26 13 12 50 50 H 1.09003 * 109.48945 * 183.06528 * 26 13 12 51 51 H 1.09003 * 109.63301 * 350.89825 * 27 10 8 52 52 H 1.09003 * 109.62726 * 111.48107 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 3.2660 -1.3243 0.9888 6 6 3.6755 -2.0088 2.2944 7 6 5.0245 -2.7050 2.1039 8 6 5.4282 -3.3787 3.3901 9 8 4.7076 -3.3092 4.3631 10 7 6.5895 -4.0593 3.4587 11 6 7.4746 -4.1620 2.2886 12 6 8.8905 -3.7452 2.7173 13 7 9.3009 -4.5466 3.8780 14 6 10.7108 -4.3055 4.2122 15 6 11.5856 -4.8083 3.0928 16 8 11.0837 -5.3171 2.1127 17 7 12.9255 -4.6918 3.1802 18 6 13.7212 -5.1488 2.1616 19 1 13.2743 -5.6025 1.2893 20 6 15.1026 -5.0292 2.2520 21 7 15.6462 -4.4775 3.3136 22 14 16.1868 -5.6525 0.8643 23 1 16.4057 -4.5627 -0.1205 24 1 17.4939 -6.0909 1.4163 25 1 15.5227 -6.7992 0.1942 26 6 8.4340 -4.2902 5.0359 27 6 7.0021 -4.7245 4.7039 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 4.0200 -0.5872 0.7126 36 1 3.1809 -2.0705 0.1989 37 1 2.9215 -2.7460 2.5702 38 1 3.7604 -1.2628 3.0846 39 1 5.7784 -1.9675 1.8283 40 1 4.9400 -3.4509 1.3136 41 1 7.4859 -5.1902 1.9271 42 1 7.1187 -3.4978 1.5010 43 1 8.8965 -2.6885 2.9845 44 1 9.5836 -3.9164 1.8937 45 1 10.8742 -3.2366 4.3488 46 1 10.9611 -4.8319 5.1333 47 1 13.3268 -4.2846 3.9638 48 1 16.6106 -4.3937 3.3765 49 1 8.4464 -3.2258 5.2708 50 1 8.7962 -4.8566 5.8939 51 1 6.3337 -4.4325 5.5139 52 1 6.9689 -5.8057 4.5697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113730171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:30 Heat of formation + Delta-G solvation = -119.217856 kcal Electronic energy + Delta-G solvation = -29577.160476 eV Core-core repulsion = 25383.602632 eV Total energy + Delta-G solvation = -4193.557844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32567 -38.88664 -38.60481 -37.29758 -34.54760 -34.51937 -33.80336 -32.47555 -31.30606 -31.05734 -29.00947 -27.69857 -27.13442 -25.56171 -23.88625 -23.70333 -22.23027 -21.70589 -20.84591 -19.31117 -18.87301 -17.93049 -17.43510 -16.97499 -16.47360 -16.18007 -15.75594 -15.49519 -15.22567 -15.09872 -14.82698 -14.59516 -14.44946 -14.07138 -13.83984 -13.69137 -13.64590 -13.31788 -13.19335 -12.91307 -12.67316 -12.56581 -12.39644 -12.09368 -11.91438 -11.86418 -11.67180 -11.56241 -11.50286 -11.26807 -11.19362 -11.15835 -11.13771 -10.99847 -10.85193 -10.42596 -10.26055 -9.88671 -9.85696 -9.52064 -8.88349 -8.40959 -8.03046 -7.93194 -6.46007 -3.87029 2.53476 2.81091 3.14266 3.23614 3.29043 3.34017 3.83975 3.90964 4.19124 4.32630 4.48423 4.59654 4.69276 4.73328 4.78611 4.86164 4.94166 4.99598 5.05205 5.08359 5.14661 5.19314 5.19451 5.20594 5.28158 5.33427 5.36762 5.39980 5.42598 5.44630 5.53121 5.70839 5.76594 5.77041 5.78966 5.83310 5.85603 5.87377 6.00702 6.10148 6.15361 6.21331 6.45504 6.93248 7.10406 7.26931 7.36856 7.50943 8.01557 8.07573 8.56592 9.13368 9.49529 10.00604 10.71556 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.001741 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.705363 B =16081.364346 C =17293.005680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.382 6.382 5 C 0.062 3.938 6 C -0.102 4.102 7 C -0.138 4.138 8 C 0.516 3.484 9 O -0.547 6.547 10 N -0.613 5.613 11 C 0.114 3.886 12 C 0.038 3.962 13 N -0.515 5.515 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.579 6.579 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.041 3.959 27 C 0.118 3.882 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.027 0.973 44 H 0.116 0.884 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.034 0.966 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.757 8.234 -3.066 24.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.302 6.302 5 C -0.014 4.014 6 C -0.140 4.140 7 C -0.178 4.178 8 C 0.304 3.696 9 O -0.425 6.425 10 N -0.347 5.347 11 C -0.009 4.009 12 C -0.090 4.090 13 N -0.240 5.240 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.464 6.464 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.088 4.088 27 C -0.004 4.004 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.134 0.866 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.105 0.895 51 H 0.111 0.889 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.413 7.461 -3.116 24.770 hybrid contribution 1.414 0.835 -0.182 1.652 sum -21.999 8.296 -3.297 23.741 Atomic orbital electron populations 1.21865 0.93638 1.02738 1.02501 1.22083 0.95025 0.92478 0.88191 1.22309 1.01626 0.96821 1.02594 1.87933 1.36657 1.70011 1.35572 1.22540 0.85629 0.95399 0.97872 1.21207 0.95575 1.00373 0.96831 1.21579 0.98733 1.00993 0.96503 1.20559 0.80517 0.78339 0.90164 1.90687 1.52003 1.61453 1.38349 1.48285 1.20583 1.52350 1.13467 1.22020 0.88973 1.02996 0.86898 1.22734 0.96541 0.93697 0.96062 1.61498 1.01434 1.56416 1.04608 1.21851 0.88084 0.99441 0.99096 1.19710 0.82968 0.85595 0.88900 1.90472 1.73523 1.48719 1.33663 1.41875 1.04297 1.53456 1.20245 1.19697 0.87592 1.36308 0.99371 0.87861 1.25266 0.97318 0.97294 0.98002 1.69610 1.12350 1.44080 1.28138 0.85859 0.78928 0.79152 0.80355 1.20437 1.20916 1.19395 1.22517 0.92953 0.99387 0.93973 1.21696 0.94507 0.97485 0.86743 0.91753 0.91308 0.91980 0.92263 0.92437 0.91685 0.91735 0.93294 0.93253 0.90334 0.90383 0.88665 0.88590 0.89899 0.89678 0.95457 0.86613 0.93456 0.89176 0.77480 0.91836 0.94737 0.89508 0.88877 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.56 37.15 0.36 -0.57 16 2 C 0.08 0.58 3.34 -26.73 -0.09 0.49 16 3 C -0.18 -1.13 9.53 37.16 0.35 -0.77 16 4 O -0.38 -3.74 9.99 -35.23 -0.35 -4.09 16 5 C 0.06 0.51 5.75 37.15 0.21 0.72 16 6 C -0.10 -0.97 4.87 -26.74 -0.13 -1.10 16 7 C -0.14 -1.21 4.06 -27.88 -0.11 -1.33 16 8 C 0.52 6.43 7.71 -10.98 -0.08 6.35 16 9 O -0.55 -8.63 15.43 5.56 0.09 -8.54 16 10 N -0.61 -7.54 3.00 -172.16 -0.52 -8.06 16 11 C 0.11 1.34 6.53 -3.37 -0.02 1.32 16 12 C 0.04 0.56 5.27 -3.46 -0.02 0.54 16 13 N -0.51 -8.05 4.37 -235.44 -1.03 -9.08 16 14 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 15 C 0.44 9.91 7.44 -10.98 -0.08 9.83 16 16 O -0.58 -14.61 13.91 5.54 0.08 -14.54 16 17 N -0.56 -13.72 5.29 -10.96 -0.06 -13.78 16 18 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 19 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 22 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 C 0.04 0.52 5.62 -3.68 -0.02 0.50 16 27 C 0.12 1.46 6.60 -3.58 -0.02 1.44 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 32 H 0.06 0.37 7.87 -51.93 -0.41 -0.03 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.35 7.87 -51.93 -0.41 -0.06 16 36 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 39 H 0.10 0.70 7.67 -51.93 -0.40 0.30 16 40 H 0.10 0.67 7.99 -51.93 -0.41 0.26 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 0.76 6.02 -51.93 -0.31 0.44 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 2.04 5.76 -51.93 -0.30 1.74 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.39 7.97 -51.93 -0.41 0.97 16 47 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 51 H 0.09 1.16 7.06 -51.93 -0.37 0.79 16 52 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 415.87 15.07 6.27 6.27 Total: -1.00 -32.31 415.87 -8.92 -41.22 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -9.16 Total: 7.92 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 0.07 Total: 10.42 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: -0.88 Total: -54.17 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.19 Total: -27.17 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.31 -8.92 -41.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113730171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.996 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds