Wall clock time and date at job start Wed Apr 1 2020 00:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.46859 * 2 1 4 4 O 1.42904 * 109.47496 * 119.99409 * 2 1 3 5 5 C 1.42895 * 114.00490 * 150.00270 * 4 2 1 6 6 C 1.52992 * 109.47606 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47482 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.50703 * 109.47428 * 294.29982 * 14 13 12 16 16 O 1.21299 * 119.99823 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00417 * 179.97438 * 15 14 13 18 18 C 1.37097 * 119.99982 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99976 * 359.97438 * 18 17 15 20 20 C 1.38953 * 119.99638 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99829 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99533 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47113 * 89.99976 * 22 20 18 24 24 H 1.48507 * 109.46646 * 209.99849 * 22 20 18 25 25 H 1.48497 * 109.47312 * 329.99791 * 22 20 18 26 26 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 27 27 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 28 28 H 1.08999 * 109.47598 * 299.99901 * 1 2 3 29 29 H 1.09003 * 109.47338 * 60.00451 * 1 2 3 30 30 H 1.09006 * 109.46571 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47598 * 240.00099 * 2 1 3 32 32 H 1.09000 * 109.47241 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.46777 * 299.99602 * 3 2 1 34 34 H 1.08999 * 109.46935 * 59.99692 * 3 2 1 35 35 H 1.09002 * 109.47063 * 60.00241 * 5 4 2 36 36 H 1.09001 * 109.46798 * 300.00508 * 5 4 2 37 37 H 1.09002 * 109.47103 * 59.99788 * 6 5 4 38 38 H 1.08998 * 109.46862 * 300.00600 * 6 5 4 39 39 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 40 40 H 1.09001 * 109.46832 * 299.99974 * 7 6 5 41 41 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 42 42 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 43 43 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 44 44 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 45 45 H 1.08994 * 109.47420 * 54.30050 * 14 13 12 46 46 H 1.08997 * 109.47407 * 174.29955 * 14 13 12 47 47 H 0.97000 * 119.99497 * 0.02562 * 17 15 14 48 48 H 0.97005 * 119.99850 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.49120 * 303.14081 * 26 13 12 50 50 H 1.09003 * 109.48945 * 183.06528 * 26 13 12 51 51 H 1.09003 * 109.63301 * 350.89825 * 27 10 8 52 52 H 1.09003 * 109.62726 * 111.48107 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1669 5 6 3.2660 -1.3243 0.9888 6 6 3.6755 -2.0088 2.2944 7 6 5.0245 -2.7050 2.1039 8 6 5.4282 -3.3787 3.3901 9 8 4.7076 -3.3092 4.3631 10 7 6.5895 -4.0593 3.4587 11 6 7.4746 -4.1620 2.2886 12 6 8.8905 -3.7452 2.7173 13 7 9.3009 -4.5466 3.8780 14 6 10.7108 -4.3055 4.2122 15 6 11.5856 -4.8083 3.0928 16 8 11.0837 -5.3171 2.1127 17 7 12.9255 -4.6918 3.1802 18 6 13.7212 -5.1488 2.1616 19 1 13.2743 -5.6025 1.2893 20 6 15.1026 -5.0292 2.2520 21 7 15.6462 -4.4775 3.3136 22 14 16.1868 -5.6525 0.8643 23 1 16.4057 -4.5627 -0.1205 24 1 17.4939 -6.0909 1.4163 25 1 15.5227 -6.7992 0.1942 26 6 8.4340 -4.2902 5.0359 27 6 7.0021 -4.7245 4.7039 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 4.0200 -0.5872 0.7126 36 1 3.1809 -2.0705 0.1989 37 1 2.9215 -2.7460 2.5702 38 1 3.7604 -1.2628 3.0846 39 1 5.7784 -1.9675 1.8283 40 1 4.9400 -3.4509 1.3136 41 1 7.4859 -5.1902 1.9271 42 1 7.1187 -3.4978 1.5010 43 1 8.8965 -2.6885 2.9845 44 1 9.5836 -3.9164 1.8937 45 1 10.8742 -3.2366 4.3488 46 1 10.9611 -4.8319 5.1333 47 1 13.3268 -4.2846 3.9638 48 1 16.6106 -4.3937 3.3765 49 1 8.4464 -3.2258 5.2708 50 1 8.7962 -4.8566 5.8939 51 1 6.3337 -4.4325 5.5139 52 1 6.9689 -5.8057 4.5697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113730171.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:29 Heat of formation + Delta-G solvation = -141.713544 kcal Electronic energy + Delta-G solvation = -29578.135962 eV Core-core repulsion = 25383.602632 eV Total energy + Delta-G solvation = -4194.533330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36136 -40.28105 -39.38643 -38.63479 -36.04577 -35.42092 -35.19451 -33.24790 -33.12991 -32.06218 -30.26439 -28.30573 -27.97200 -27.02675 -25.39140 -24.72560 -23.07627 -22.29459 -21.76876 -21.03705 -19.93551 -19.77753 -18.33315 -17.81921 -17.66908 -17.20944 -16.81788 -16.59113 -16.37736 -16.27115 -16.11398 -15.78451 -15.45769 -15.39387 -15.26989 -14.98474 -14.62652 -14.20641 -14.05727 -13.76616 -13.70254 -13.49519 -13.26946 -13.21951 -13.00906 -12.96921 -12.78246 -12.72795 -12.42282 -12.40167 -12.28647 -12.26839 -12.16252 -12.12371 -12.07215 -11.83497 -11.55201 -11.42128 -10.86410 -10.48239 -10.32303 -9.98104 -9.75993 -9.21463 -8.44130 -5.92325 1.39599 1.43858 1.56046 1.57923 1.89560 2.08039 2.29848 2.69469 2.76194 3.23172 3.38372 3.49326 3.87095 3.95041 3.96608 3.98800 4.11541 4.14163 4.16232 4.24501 4.25790 4.30601 4.34733 4.44680 4.47647 4.50125 4.52101 4.53693 4.60851 4.67753 4.74002 4.74916 4.84610 4.88705 4.92499 4.95237 4.96037 5.06581 5.10788 5.24242 5.30239 5.33642 5.43152 5.44427 5.82721 6.05805 6.14458 6.35740 6.40016 6.63005 7.11023 7.15673 7.59623 8.14503 8.73187 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.001741 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.705363 B =16081.364346 C =17293.005680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.409 6.409 5 C 0.064 3.936 6 C -0.096 4.096 7 C -0.131 4.131 8 C 0.512 3.488 9 O -0.585 6.585 10 N -0.613 5.613 11 C 0.122 3.878 12 C 0.039 3.961 13 N -0.531 5.531 14 C 0.058 3.942 15 C 0.444 3.556 16 O -0.610 6.610 17 N -0.575 5.575 18 C -0.330 4.330 19 H 0.082 0.918 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.272 1.272 26 C 0.047 3.953 27 C 0.118 3.882 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.035 0.965 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.395 0.605 48 H 0.276 0.724 49 H 0.037 0.963 50 H 0.103 0.897 51 H 0.091 0.909 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.064 8.797 -4.054 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.330 6.330 5 C -0.013 4.013 6 C -0.134 4.134 7 C -0.171 4.171 8 C 0.302 3.698 9 O -0.466 6.466 10 N -0.346 5.346 11 C 0.000 4.000 12 C -0.090 4.090 13 N -0.257 5.257 14 C -0.073 4.073 15 C 0.231 3.769 16 O -0.496 6.496 17 N -0.212 5.212 18 C -0.459 4.459 19 H 0.100 0.900 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.081 4.081 27 C -0.005 4.005 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.136 0.864 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.053 0.947 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.128 0.872 47 H 0.228 0.772 48 H 0.086 0.914 49 H 0.056 0.944 50 H 0.121 0.879 51 H 0.110 0.890 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.725 8.034 -4.097 25.382 hybrid contribution 1.424 0.658 0.150 1.576 sum -22.301 8.692 -3.948 24.259 Atomic orbital electron populations 1.21888 0.93143 1.02639 1.03017 1.22292 0.95547 0.92805 0.87862 1.22297 1.01520 0.96420 1.02909 1.87905 1.37391 1.70510 1.37160 1.22563 0.85518 0.95985 0.97210 1.21107 0.95656 0.99466 0.97176 1.21613 0.98636 1.01764 0.95044 1.21194 0.79894 0.77756 0.90912 1.90673 1.53070 1.62805 1.40038 1.48355 1.20657 1.52093 1.13520 1.22001 0.87340 1.03387 0.87320 1.22656 0.97411 0.94118 0.94788 1.61484 1.00991 1.57214 1.05972 1.21716 0.88025 1.00326 0.97216 1.20666 0.82725 0.83916 0.89593 1.90454 1.74055 1.49671 1.35370 1.41943 1.05033 1.54240 1.20005 1.19669 0.88625 1.37796 0.99859 0.90023 1.26011 0.97977 0.97109 1.00202 1.69675 1.12829 1.44472 1.29305 0.84944 0.77275 0.78540 0.77690 1.19680 1.19890 1.19703 1.22531 0.92431 0.99857 0.93295 1.21673 0.94228 0.97543 0.87035 0.92650 0.89385 0.92382 0.90996 0.92562 0.90040 0.92749 0.92037 0.91621 0.92175 0.92466 0.86448 0.86050 0.90658 0.86296 0.94661 0.89786 0.91768 0.87175 0.77151 0.91435 0.94428 0.87919 0.89024 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.56 71.98 0.69 -1.00 16 2 C 0.07 0.94 3.34 30.60 0.10 1.05 16 3 C -0.17 -1.99 9.53 71.99 0.69 -1.30 16 4 O -0.41 -7.67 9.99 -148.98 -1.49 -9.16 16 5 C 0.06 0.92 5.75 71.98 0.41 1.34 16 6 C -0.10 -1.74 4.87 30.59 0.15 -1.59 16 7 C -0.13 -1.99 4.06 29.85 0.12 -1.87 16 8 C 0.51 12.05 7.71 87.66 0.68 12.73 16 9 O -0.59 -18.31 15.43 -3.03 -0.05 -18.35 16 10 N -0.61 -14.06 3.00 -816.99 -2.45 -16.52 16 11 C 0.12 2.63 6.53 86.50 0.57 3.20 16 12 C 0.04 1.09 5.27 86.54 0.46 1.55 16 13 N -0.53 -15.89 4.37 -898.81 -3.93 -19.82 16 14 C 0.06 1.90 5.45 85.56 0.47 2.36 16 15 C 0.44 19.91 7.44 87.66 0.65 20.57 16 16 O -0.61 -31.23 13.91 -3.09 -0.04 -31.27 16 17 N -0.57 -28.37 5.29 -306.97 -1.62 -29.99 16 18 C -0.33 -18.11 9.68 84.04 0.81 -17.29 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 22 Si 0.99 41.90 29.55 68.60 2.03 43.93 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.05 1.11 5.62 86.40 0.49 1.59 16 27 C 0.12 2.76 6.60 86.36 0.57 3.33 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 0.74 7.79 -2.39 -0.02 0.73 16 32 H 0.06 0.64 7.87 -2.39 -0.02 0.63 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.73 7.87 -2.39 -0.02 0.72 16 36 H 0.07 0.74 8.09 -2.39 -0.02 0.72 16 37 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 38 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 39 H 0.12 1.32 7.67 -2.39 -0.02 1.30 16 40 H 0.12 1.28 7.99 -2.39 -0.02 1.26 16 41 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.12 1.73 6.02 -2.39 -0.01 1.72 16 43 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 2.95 5.76 -2.39 -0.01 2.94 16 45 H 0.06 1.90 8.12 -2.39 -0.02 1.89 16 46 H 0.11 3.17 7.97 -2.39 -0.02 3.15 16 47 H 0.39 18.67 7.90 -92.71 -0.73 17.94 16 48 H 0.28 13.76 8.31 -92.70 -0.77 12.99 16 49 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.10 2.09 7.99 -2.39 -0.02 2.07 16 51 H 0.09 2.20 7.06 -2.39 -0.02 2.19 16 52 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -71.07 415.87 0.21 -70.86 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.17 Total: 34.44 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 7.31 Total: 24.43 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -7.72 Total: -114.87 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -1.58 Total: -58.79 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.07 0.21 -70.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113730171.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.851 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds