Wall clock time and date at job start Wed Apr 1 2020 01:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47323 * 2 1 4 4 C 1.52998 * 109.47526 * 120.00077 * 2 1 3 5 5 O 1.42903 * 109.46917 * 294.99876 * 4 2 1 6 6 C 1.53005 * 109.46998 * 240.00233 * 2 1 3 7 7 C 1.53002 * 109.47037 * 64.99764 * 6 2 1 8 8 C 1.53002 * 109.46660 * 180.02562 * 7 6 2 9 9 N 1.46502 * 109.46587 * 180.02562 * 8 7 6 10 10 C 1.34783 * 119.99595 * 179.72570 * 9 8 7 11 11 O 1.21343 * 120.00099 * 0.26899 * 10 9 8 12 12 C 1.49450 * 119.99613 * 180.27192 * 10 9 8 13 13 O 1.21344 * 120.00084 * 353.51620 * 12 10 9 14 14 N 1.34783 * 119.99600 * 173.51622 * 12 10 9 15 15 C 1.47080 * 120.87896 * 181.26123 * 14 12 10 16 16 C 1.53696 * 108.27407 * 128.75428 * 15 14 12 17 17 N 1.46895 * 109.26055 * 54.08218 * 16 15 14 18 18 C 1.46895 * 111.00137 * 172.60571 * 17 16 15 19 19 C 1.50701 * 109.47196 * 294.29773 * 18 17 16 20 20 H 1.08000 * 119.99669 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00018 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99955 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99874 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47342 * 89.99832 * 23 21 19 25 25 H 1.48505 * 109.46760 * 209.99695 * 23 21 19 26 26 H 1.48499 * 109.47368 * 329.99475 * 23 21 19 27 27 C 1.46899 * 111.26891 * 296.75698 * 17 16 15 28 28 C 1.47080 * 120.88161 * 1.53657 * 14 12 10 29 29 H 1.08994 * 109.47394 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46837 * 299.99650 * 1 2 3 31 31 H 1.09000 * 109.47234 * 59.99325 * 1 2 3 32 32 H 1.08997 * 109.46858 * 54.99457 * 4 2 1 33 33 H 1.08998 * 109.47680 * 174.99751 * 4 2 1 34 34 H 0.96698 * 113.99689 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.46666 * 304.99563 * 6 2 1 36 36 H 1.08998 * 109.47353 * 184.99965 * 6 2 1 37 37 H 1.08999 * 109.47053 * 60.00348 * 7 6 2 38 38 H 1.08998 * 109.47213 * 300.00286 * 7 6 2 39 39 H 1.08999 * 109.47409 * 60.00192 * 8 7 6 40 40 H 1.09006 * 109.47068 * 299.99585 * 8 7 6 41 41 H 0.96996 * 120.00122 * 359.97438 * 9 8 7 42 42 H 1.08994 * 109.62460 * 248.52257 * 15 14 12 43 43 H 1.09003 * 109.62727 * 9.10190 * 15 14 12 44 44 H 1.08999 * 109.64672 * 294.07627 * 16 15 14 45 45 H 1.09003 * 109.41848 * 173.94997 * 16 15 14 46 46 H 1.09000 * 109.47212 * 54.30149 * 18 17 16 47 47 H 1.09004 * 109.47144 * 174.30415 * 18 17 16 48 48 H 0.96996 * 120.00041 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.49066 * 303.14486 * 27 17 16 50 50 H 1.08994 * 109.49621 * 183.06530 * 27 17 16 51 51 H 1.09004 * 109.62846 * 350.89617 * 28 14 12 52 52 H 1.08997 * 109.62899 * 111.47945 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 1.6621 0.0168 2.4130 6 6 2.0400 -0.7212 -1.2493 7 6 1.6351 0.0690 -2.4954 8 6 2.1446 -0.6526 -3.7446 9 7 1.7575 0.1044 -4.9377 10 6 2.1055 -0.3417 -6.1610 11 8 2.7351 -1.3727 -6.2745 12 6 1.7158 0.4337 -7.3778 13 8 0.9877 1.3990 -7.2747 14 7 2.1731 0.0608 -8.5896 15 6 1.8243 0.8259 -9.7963 16 6 3.1220 1.1498 -10.5534 17 7 3.8625 -0.0946 -10.8002 18 6 5.0201 0.1456 -11.6721 19 6 4.5415 0.5636 -13.0386 20 1 3.4833 0.6432 -13.2391 21 6 5.4547 0.8453 -14.0325 22 7 5.0371 1.2106 -15.2248 23 14 7.2850 0.7083 -13.6853 24 1 7.7460 -0.6689 -13.9955 25 1 8.0234 1.6798 -14.5316 26 1 7.5408 1.0050 -12.2529 27 6 4.2747 -0.7282 -9.5405 28 6 3.0293 -1.1255 -8.7410 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.6054 -1.7197 1.2951 33 1 3.1264 -0.7995 1.2055 34 1 1.9527 -0.3833 3.2440 35 1 1.6054 -1.7198 -1.2951 36 1 3.1263 -0.7995 -1.2057 37 1 2.0698 1.0675 -2.4494 38 1 0.5488 0.1472 -2.5389 39 1 1.7096 -1.6510 -3.7903 40 1 3.2310 -0.7311 -3.7012 41 1 1.2539 0.9284 -4.8470 42 1 1.1661 0.2310 -10.4294 43 1 1.3244 1.7516 -9.5111 44 1 3.7351 1.8258 -9.9574 45 1 2.8781 1.6227 -11.5048 46 1 5.6381 0.9360 -11.2460 47 1 5.6072 -0.7689 -11.7568 48 1 5.6795 1.4092 -15.9239 49 1 4.8717 -0.0260 -8.9586 50 1 4.8668 -1.6172 -9.7572 51 1 3.3264 -1.4906 -7.7578 52 1 2.4847 -1.9044 -9.2747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119227347.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:01 Heat of formation + Delta-G solvation = -133.564281 kcal Electronic energy + Delta-G solvation = -29568.582849 eV Core-core repulsion = 25374.402898 eV Total energy + Delta-G solvation = -4194.179951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07073 -40.09385 -39.04817 -38.82987 -37.20248 -36.14744 -35.31125 -34.39593 -32.18749 -31.89733 -30.66605 -28.08661 -27.53244 -26.85036 -25.31529 -24.26077 -23.26806 -22.66194 -21.97805 -20.96103 -20.61528 -19.10092 -18.56956 -18.30585 -18.09972 -17.37027 -16.98988 -16.64169 -16.46331 -16.18739 -16.12434 -16.03971 -15.71162 -15.39867 -15.30402 -15.08315 -14.97795 -14.46442 -14.38014 -14.30244 -13.76853 -13.72806 -13.32293 -13.31361 -12.96187 -12.88888 -12.82536 -12.55883 -12.44358 -12.33681 -12.27387 -12.17248 -11.94542 -11.85472 -11.73073 -11.53688 -11.46838 -11.36850 -10.84427 -10.78369 -10.37099 -10.19790 -9.93814 -9.09402 -8.28175 -6.31718 0.25646 1.20351 1.35306 1.36305 1.46573 2.03982 2.34094 2.36890 3.04198 3.15610 3.18028 3.34060 3.87838 3.90876 3.91200 4.00388 4.05008 4.15657 4.17875 4.27342 4.35945 4.37099 4.44363 4.51509 4.62119 4.64784 4.66019 4.77358 4.77819 4.80739 4.81559 4.88438 4.92731 4.95072 4.95877 5.07437 5.13930 5.19402 5.20635 5.23034 5.40650 5.47476 5.50323 5.51345 5.85932 5.98141 6.18413 6.27249 6.59579 6.61761 6.74294 6.85917 6.91621 7.31942 8.88005 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026452 B = 0.001643 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.253678 B =17035.495245 C =17579.119086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.068 0.932 4 C 0.075 3.925 5 O -0.597 6.597 6 C -0.105 4.105 7 C -0.126 4.126 8 C 0.115 3.885 9 N -0.685 5.685 10 C 0.515 3.485 11 O -0.522 6.522 12 C 0.501 3.499 13 O -0.549 6.549 14 N -0.577 5.577 15 C 0.121 3.879 16 C 0.057 3.943 17 N -0.541 5.541 18 C 0.171 3.829 19 C -0.517 4.517 20 H 0.042 0.958 21 C 0.010 3.990 22 N -0.946 5.946 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.283 1.283 26 H -0.254 1.254 27 C 0.039 3.961 28 C 0.070 3.930 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.419 0.581 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.023 0.977 45 H 0.077 0.923 46 H -0.015 1.015 47 H 0.034 0.966 48 H 0.267 0.733 49 H 0.026 0.974 50 H 0.095 0.905 51 H 0.163 0.837 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 -5.765 35.380 36.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.086 0.914 4 C -0.002 4.002 5 O -0.405 6.405 6 C -0.143 4.143 7 C -0.164 4.164 8 C -0.007 4.007 9 N -0.337 5.337 10 C 0.296 3.704 11 O -0.401 6.401 12 C 0.284 3.716 13 O -0.428 6.428 14 N -0.310 5.310 15 C -0.001 4.001 16 C -0.072 4.072 17 N -0.266 5.266 18 C 0.044 3.956 19 C -0.555 4.555 20 H 0.060 0.940 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.770 3.230 24 H -0.189 1.189 25 H -0.209 1.209 26 H -0.178 1.178 27 C -0.090 4.090 28 C -0.051 4.051 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.257 0.743 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.003 0.997 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.044 0.956 50 H 0.113 0.887 51 H 0.179 0.821 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.445 -5.880 34.526 35.611 hybrid contribution 1.281 0.796 -0.035 1.508 sum -5.165 -5.084 34.492 35.245 Atomic orbital electron populations 1.21817 0.94849 1.01965 1.01618 1.21123 0.96582 1.00109 0.93349 0.91377 1.22317 0.98535 0.94291 0.85064 1.86430 1.82040 1.54347 1.17681 1.21414 1.01815 0.99318 0.91721 1.21797 1.02512 0.99883 0.92186 1.21697 1.01011 0.95711 0.82302 1.45835 1.55043 1.28211 1.04622 1.19899 0.80239 0.85195 0.85039 1.90337 1.40181 1.24878 1.84668 1.20312 0.81523 0.84866 0.84883 1.90725 1.37440 1.28433 1.86205 1.48236 1.48038 1.28709 1.05973 1.21932 0.96402 0.97347 0.84438 1.22337 0.94344 0.91055 0.99484 1.61848 1.25312 1.25355 1.14036 1.19951 0.88975 0.95055 0.91578 1.21243 0.94158 1.44947 0.95192 0.93956 1.25804 1.03997 0.94385 0.94534 1.70041 1.36397 1.48190 1.04008 0.85736 0.79471 0.78770 0.79064 1.18854 1.20866 1.17828 1.22583 0.97065 0.99644 0.89673 1.23375 0.89950 0.85841 1.05948 0.92400 0.93538 0.91996 0.92762 0.92771 0.75547 0.90481 0.90618 0.90570 0.90117 0.90429 0.90666 0.74304 0.89904 0.88329 0.95913 0.90460 0.99723 0.94826 0.92436 0.95610 0.88706 0.82102 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.85 71.98 0.64 -0.74 16 2 C -0.09 -0.79 2.63 -10.79 -0.03 -0.82 16 3 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 4 C 0.08 0.58 6.43 71.98 0.46 1.05 16 5 O -0.60 -6.29 13.20 -148.98 -1.97 -8.26 16 6 C -0.10 -0.61 4.68 30.60 0.14 -0.47 16 7 C -0.13 -0.87 5.08 30.60 0.16 -0.72 16 8 C 0.11 1.26 5.67 86.38 0.49 1.75 16 9 N -0.68 -10.86 5.55 -464.39 -2.58 -13.44 16 10 C 0.52 11.74 7.81 87.27 0.68 12.42 16 11 O -0.52 -13.12 13.03 -3.23 -0.04 -13.16 16 12 C 0.50 13.92 7.77 87.27 0.68 14.60 16 13 O -0.55 -16.86 15.95 -3.23 -0.05 -16.91 16 14 N -0.58 -17.23 3.00 -818.62 -2.46 -19.69 16 15 C 0.12 3.90 6.62 86.50 0.57 4.47 16 16 C 0.06 2.19 5.47 86.54 0.47 2.66 16 17 N -0.54 -22.16 4.62 -898.90 -4.15 -26.31 16 18 C 0.17 8.15 3.79 85.56 0.32 8.48 16 19 C -0.52 -29.57 8.96 25.60 0.23 -29.34 16 20 H 0.04 2.68 7.37 -2.91 -0.02 2.66 16 21 C 0.01 0.60 5.47 84.65 0.46 1.06 16 22 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 23 Si 0.95 43.79 27.47 68.60 1.88 45.67 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 27 C 0.04 1.28 5.62 86.38 0.49 1.76 16 28 C 0.07 1.98 6.35 86.35 0.55 2.53 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.58 7.82 -2.38 -0.02 0.56 16 31 H 0.06 0.52 6.57 -2.39 -0.02 0.51 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.40 0.78 9.12 -74.06 -0.68 0.11 16 35 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.08 0.53 6.56 -2.39 -0.02 0.51 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.42 5.82 7.96 -92.71 -0.74 5.08 16 42 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.10 3.04 7.07 -2.39 -0.02 3.02 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.08 3.38 6.67 -2.39 -0.02 3.36 16 46 H -0.01 -0.72 7.18 -2.39 -0.02 -0.73 16 47 H 0.03 1.55 7.40 -2.39 -0.02 1.54 16 48 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.09 2.87 7.99 -2.39 -0.02 2.85 16 51 H 0.16 4.30 3.92 -75.37 -0.30 4.01 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -72.51 408.52 -3.57 -76.08 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.83 Total: 15.74 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.32 Total: 18.70 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -8.89 Total: -117.87 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -2.06 Total: -38.33 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.67 kcal Total: -72.51 -3.57 -76.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119227347.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.482 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds