Wall clock time and date at job start Wed Apr 1 2020 01:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47268 * 2 1 4 4 C 1.53004 * 109.47449 * 239.99812 * 2 1 3 5 5 O 1.42899 * 109.46892 * 65.00154 * 4 2 1 6 6 C 1.53006 * 109.46972 * 119.99811 * 2 1 3 7 7 C 1.53003 * 109.46974 * 294.99819 * 6 2 1 8 8 C 1.52999 * 109.46707 * 179.97438 * 7 6 2 9 9 N 1.46509 * 109.46697 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99582 * 179.97438 * 9 8 7 11 11 O 1.21345 * 120.00312 * 359.97438 * 10 9 8 12 12 C 1.49451 * 119.99646 * 179.97438 * 10 9 8 13 13 O 1.21352 * 119.99922 * 353.51948 * 12 10 9 14 14 N 1.34768 * 119.99895 * 173.51612 * 12 10 9 15 15 C 1.47085 * 120.88189 * 181.26135 * 14 12 10 16 16 C 1.53691 * 108.27713 * 128.76056 * 15 14 12 17 17 N 1.46897 * 109.25967 * 54.08228 * 16 15 14 18 18 C 1.46901 * 110.99822 * 172.60965 * 17 16 15 19 19 C 1.50699 * 109.47288 * 294.29904 * 18 17 16 20 20 H 1.07994 * 119.99500 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99931 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99635 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00144 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47260 * 89.99890 * 23 21 19 25 25 H 1.48500 * 109.47189 * 209.99734 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99779 * 23 21 19 27 27 C 1.46898 * 111.26791 * 296.75400 * 17 16 15 28 28 C 1.47081 * 120.88316 * 1.54277 * 14 12 10 29 29 H 1.08995 * 109.47339 * 300.00379 * 1 2 3 30 30 H 1.09005 * 109.47054 * 60.00200 * 1 2 3 31 31 H 1.09000 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46845 * 305.00109 * 4 2 1 33 33 H 1.09000 * 109.47200 * 184.99988 * 4 2 1 34 34 H 0.96703 * 113.99780 * 180.02562 * 5 4 2 35 35 H 1.08997 * 109.46789 * 55.00065 * 6 2 1 36 36 H 1.09002 * 109.47036 * 175.00185 * 6 2 1 37 37 H 1.08995 * 109.47091 * 299.99997 * 7 6 2 38 38 H 1.09002 * 109.46940 * 60.00307 * 7 6 2 39 39 H 1.08995 * 109.47369 * 299.99859 * 8 7 6 40 40 H 1.09002 * 109.47142 * 60.00464 * 8 7 6 41 41 H 0.97000 * 120.00178 * 0.02562 * 9 8 7 42 42 H 1.09005 * 109.62383 * 248.52756 * 15 14 12 43 43 H 1.08995 * 109.62707 * 9.10215 * 15 14 12 44 44 H 1.09007 * 109.64680 * 294.07494 * 16 15 14 45 45 H 1.09001 * 109.42356 * 173.95220 * 16 15 14 46 46 H 1.08997 * 109.47235 * 54.30529 * 18 17 16 47 47 H 1.09001 * 109.46999 * 174.29667 * 18 17 16 48 48 H 0.97002 * 119.99655 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.49709 * 303.15145 * 27 17 16 50 50 H 1.08998 * 109.49403 * 183.06307 * 27 17 16 51 51 H 1.08998 * 109.62640 * 350.89115 * 28 14 12 52 52 H 1.09001 * 109.63044 * 111.47439 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6621 0.0167 -2.4130 6 6 2.0399 -0.7212 1.2493 7 6 1.6352 0.0690 2.4954 8 6 2.1446 -0.6525 3.7446 9 7 1.7565 0.1039 4.9378 10 6 2.0991 -0.3454 6.1614 11 8 2.7285 -1.3766 6.2749 12 6 1.7037 0.4265 7.3786 13 8 1.1786 1.5144 7.2630 14 7 1.9302 -0.0857 8.6044 15 6 1.5241 0.6448 9.8146 16 6 0.7071 -0.3082 10.7015 17 7 1.4858 -1.5296 10.9459 18 6 0.8175 -2.3918 11.9298 19 6 0.7919 -1.7003 13.2685 20 1 1.2280 -0.7183 13.3774 21 6 0.2107 -2.3208 14.3539 22 7 0.1889 -1.7175 15.5223 23 14 -0.5443 -4.0190 14.1653 24 1 0.4862 -5.0523 14.4407 25 1 -1.6668 -4.1711 15.1256 26 1 -1.0525 -4.1837 12.7797 27 6 1.7416 -2.2575 9.6959 28 6 2.5956 -1.3872 8.7676 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7995 -1.2055 34 1 1.9527 -0.3834 -3.2441 35 1 1.6053 -1.7197 1.2952 36 1 3.1263 -0.7994 1.2057 37 1 2.0698 1.0675 2.4494 38 1 0.5488 0.1472 2.5390 39 1 1.7096 -1.6509 3.7904 40 1 3.2309 -0.7311 3.7012 41 1 1.2524 0.9276 4.8472 42 1 2.4098 0.9822 10.3531 43 1 0.9124 1.5030 9.5364 44 1 -0.2260 -0.5658 10.2003 45 1 0.4876 0.1794 11.6513 46 1 -0.2034 -2.5911 11.6042 47 1 1.3611 -3.3325 12.0171 48 1 -0.2197 -2.1542 16.2860 49 1 0.7943 -2.4879 9.2086 50 1 2.2725 -3.1836 9.9164 51 1 2.6925 -1.8731 7.7968 52 1 3.5822 -1.2414 9.2075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119227348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:06 Heat of formation + Delta-G solvation = -106.209273 kcal Electronic energy + Delta-G solvation = -29577.699766 eV Core-core repulsion = 25384.706016 eV Total energy + Delta-G solvation = -4192.993749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.98135 -39.00846 -38.39180 -37.68356 -36.57642 -35.10720 -34.24704 -32.36824 -31.34306 -30.81469 -28.93849 -27.30403 -26.74455 -25.73100 -24.13219 -23.03956 -22.21931 -21.46479 -20.83521 -20.43821 -19.40835 -17.87357 -17.67289 -17.05549 -16.75723 -16.55780 -16.11981 -15.89429 -15.47260 -15.18273 -14.78396 -14.63400 -14.60573 -14.46089 -14.05468 -14.00182 -13.76124 -13.45555 -13.33689 -12.97836 -12.86030 -12.61857 -12.41586 -12.33886 -12.13147 -11.89488 -11.61998 -11.44642 -11.35844 -11.18068 -11.10206 -11.01106 -10.88058 -10.78332 -10.55974 -10.50889 -10.38690 -9.94038 -9.58568 -9.38385 -9.04338 -8.64137 -8.59211 -7.44942 -6.08239 -4.06093 1.32094 2.21149 3.11948 3.26568 3.34079 3.35969 3.37247 3.64098 4.17983 4.25711 4.30547 4.39403 4.41778 4.55568 4.70240 4.73634 4.83980 4.97752 5.00995 5.13063 5.18856 5.23649 5.26867 5.28059 5.34159 5.38281 5.49330 5.55236 5.58949 5.60207 5.62648 5.75279 5.77192 5.82706 5.88316 5.89907 6.17859 6.30124 6.35609 6.43466 6.53213 6.79238 6.85811 6.93217 7.08242 7.30497 7.53876 7.62708 7.82142 7.91703 7.96801 8.60987 8.99225 9.53291 11.04637 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.001648 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.099525 B =16990.531009 C =17412.611482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.079 0.921 4 C 0.079 3.921 5 O -0.574 6.574 6 C -0.110 4.110 7 C -0.134 4.134 8 C 0.116 3.884 9 N -0.702 5.702 10 C 0.512 3.488 11 O -0.508 6.508 12 C 0.502 3.498 13 O -0.534 6.534 14 N -0.570 5.570 15 C 0.110 3.890 16 C 0.052 3.948 17 N -0.528 5.528 18 C 0.162 3.838 19 C -0.512 4.512 20 H 0.082 0.918 21 C 0.070 3.930 22 N -0.899 5.899 23 Si 0.875 3.125 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.269 1.269 27 C 0.039 3.961 28 C 0.059 3.941 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.379 0.621 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.413 0.587 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.026 0.974 45 H 0.105 0.895 46 H -0.012 1.012 47 H 0.026 0.974 48 H 0.264 0.736 49 H 0.025 0.975 50 H 0.082 0.918 51 H 0.150 0.850 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 1.957 -33.454 33.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 H 0.097 0.903 4 C 0.001 3.999 5 O -0.379 6.379 6 C -0.149 4.149 7 C -0.171 4.171 8 C -0.007 4.007 9 N -0.355 5.355 10 C 0.294 3.706 11 O -0.385 6.385 12 C 0.283 3.717 13 O -0.413 6.413 14 N -0.302 5.302 15 C -0.011 4.011 16 C -0.077 4.077 17 N -0.253 5.253 18 C 0.036 3.964 19 C -0.550 4.550 20 H 0.100 0.900 21 C -0.132 4.132 22 N -0.537 5.537 23 Si 0.702 3.298 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.194 1.194 27 C -0.090 4.090 28 C -0.062 4.062 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.226 0.774 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.250 0.750 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.123 0.877 46 H 0.006 0.994 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.043 0.957 50 H 0.101 0.899 51 H 0.166 0.834 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.333 2.288 -32.575 32.941 hybrid contribution -1.142 -1.296 -0.523 1.805 sum 3.191 0.992 -33.097 33.266 Atomic orbital electron populations 1.21837 0.94454 1.01915 1.02216 1.21125 0.96933 1.00457 0.92565 0.90299 1.22250 0.97944 0.94182 0.85544 1.86474 1.81619 1.53378 1.16461 1.21468 1.01390 0.99327 0.92669 1.21848 1.02333 0.99936 0.93008 1.21515 1.00813 0.95627 0.82770 1.45810 1.56514 1.28120 1.05021 1.20356 0.80047 0.85240 0.84932 1.90368 1.39568 1.24070 1.84519 1.19879 0.80911 0.86304 0.84562 1.90736 1.43518 1.20780 1.86225 1.48194 1.55804 1.21375 1.04811 1.22157 1.00332 0.95151 0.83509 1.22449 0.93268 0.92094 0.99910 1.61935 1.48548 1.06545 1.08254 1.20180 0.91608 0.92922 0.91697 1.21017 1.37514 1.05303 0.91172 0.90045 1.24890 0.95674 0.97518 0.95145 1.69891 1.45148 1.38292 1.00416 0.86867 0.79395 0.85313 0.78200 1.20108 1.21189 1.19357 1.22468 0.98268 0.97172 0.91104 1.23373 0.95713 0.82270 1.04831 0.92333 0.92016 0.92825 0.93589 0.93631 0.77413 0.91161 0.91236 0.90780 0.90526 0.90774 0.90775 0.75028 0.90014 0.88997 0.95627 0.87705 0.99385 0.95586 0.92624 0.95694 0.89941 0.83430 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.84 37.16 0.33 -0.48 16 2 C -0.09 -0.46 2.63 -90.62 -0.24 -0.70 16 3 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.08 0.37 6.43 37.16 0.24 0.60 16 5 O -0.57 -3.32 13.19 -35.23 -0.46 -3.78 16 6 C -0.11 -0.46 4.68 -26.73 -0.13 -0.58 16 7 C -0.13 -0.63 5.08 -26.73 -0.14 -0.76 16 8 C 0.12 0.79 5.67 -4.04 -0.02 0.76 16 9 N -0.70 -6.40 5.55 -60.73 -0.34 -6.73 16 10 C 0.51 6.39 7.81 -11.58 -0.09 6.30 16 11 O -0.51 -7.00 13.03 5.50 0.07 -6.93 16 12 C 0.50 7.37 7.77 -11.59 -0.09 7.28 16 13 O -0.53 -8.58 15.95 5.49 0.09 -8.49 16 14 N -0.57 -8.87 3.00 -172.69 -0.52 -9.39 16 15 C 0.11 1.79 6.62 -3.36 -0.02 1.77 16 16 C 0.05 0.98 5.47 -3.47 -0.02 0.96 16 17 N -0.53 -10.90 4.62 -235.47 -1.09 -11.98 16 18 C 0.16 3.89 3.79 -4.98 -0.02 3.87 16 19 C -0.51 -14.29 8.96 -34.44 -0.31 -14.60 16 20 H 0.08 2.45 7.37 -52.49 -0.39 2.07 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 22 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 23 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 27 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 28 C 0.06 0.90 6.36 -3.60 -0.02 0.87 16 29 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 30 H 0.06 0.41 7.82 -51.93 -0.41 0.00 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.38 0.57 9.12 45.56 0.42 0.99 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.36 6.57 -51.93 -0.34 0.02 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.41 3.34 7.96 -40.82 -0.32 3.02 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 2.18 6.67 -51.93 -0.35 1.83 16 46 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 47 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.08 1.34 7.99 -51.93 -0.41 0.93 16 51 H 0.15 2.15 3.92 -56.54 -0.22 1.93 16 52 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 408.52 15.07 6.16 6.16 Total: -1.00 -33.60 408.52 -8.79 -42.39 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.15 Total: 0.69 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.64 Total: 7.85 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -1.17 Total: -54.55 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.31 Total: -19.21 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.60 -8.79 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119227348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.819 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds