Wall clock time and date at job start Wed Apr 1 2020 01:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47268 * 2 1 4 4 C 1.53004 * 109.47449 * 239.99812 * 2 1 3 5 5 O 1.42899 * 109.46892 * 65.00154 * 4 2 1 6 6 C 1.53006 * 109.46972 * 119.99811 * 2 1 3 7 7 C 1.53003 * 109.46974 * 294.99819 * 6 2 1 8 8 C 1.52999 * 109.46707 * 179.97438 * 7 6 2 9 9 N 1.46509 * 109.46697 * 180.02562 * 8 7 6 10 10 C 1.34780 * 119.99582 * 179.97438 * 9 8 7 11 11 O 1.21345 * 120.00312 * 359.97438 * 10 9 8 12 12 C 1.49451 * 119.99646 * 179.97438 * 10 9 8 13 13 O 1.21352 * 119.99922 * 353.51948 * 12 10 9 14 14 N 1.34768 * 119.99895 * 173.51612 * 12 10 9 15 15 C 1.47085 * 120.88189 * 181.26135 * 14 12 10 16 16 C 1.53691 * 108.27713 * 128.76056 * 15 14 12 17 17 N 1.46897 * 109.25967 * 54.08228 * 16 15 14 18 18 C 1.46901 * 110.99822 * 172.60965 * 17 16 15 19 19 C 1.50699 * 109.47288 * 294.29904 * 18 17 16 20 20 H 1.07994 * 119.99500 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99931 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99635 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00144 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47260 * 89.99890 * 23 21 19 25 25 H 1.48500 * 109.47189 * 209.99734 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99779 * 23 21 19 27 27 C 1.46898 * 111.26791 * 296.75400 * 17 16 15 28 28 C 1.47081 * 120.88316 * 1.54277 * 14 12 10 29 29 H 1.08995 * 109.47339 * 300.00379 * 1 2 3 30 30 H 1.09005 * 109.47054 * 60.00200 * 1 2 3 31 31 H 1.09000 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46845 * 305.00109 * 4 2 1 33 33 H 1.09000 * 109.47200 * 184.99988 * 4 2 1 34 34 H 0.96703 * 113.99780 * 180.02562 * 5 4 2 35 35 H 1.08997 * 109.46789 * 55.00065 * 6 2 1 36 36 H 1.09002 * 109.47036 * 175.00185 * 6 2 1 37 37 H 1.08995 * 109.47091 * 299.99997 * 7 6 2 38 38 H 1.09002 * 109.46940 * 60.00307 * 7 6 2 39 39 H 1.08995 * 109.47369 * 299.99859 * 8 7 6 40 40 H 1.09002 * 109.47142 * 60.00464 * 8 7 6 41 41 H 0.97000 * 120.00178 * 0.02562 * 9 8 7 42 42 H 1.09005 * 109.62383 * 248.52756 * 15 14 12 43 43 H 1.08995 * 109.62707 * 9.10215 * 15 14 12 44 44 H 1.09007 * 109.64680 * 294.07494 * 16 15 14 45 45 H 1.09001 * 109.42356 * 173.95220 * 16 15 14 46 46 H 1.08997 * 109.47235 * 54.30529 * 18 17 16 47 47 H 1.09001 * 109.46999 * 174.29667 * 18 17 16 48 48 H 0.97002 * 119.99655 * 180.02562 * 22 21 19 49 49 H 1.08994 * 109.49709 * 303.15145 * 27 17 16 50 50 H 1.08998 * 109.49403 * 183.06307 * 27 17 16 51 51 H 1.08998 * 109.62640 * 350.89115 * 28 14 12 52 52 H 1.09001 * 109.63044 * 111.47439 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.6621 0.0167 -2.4130 6 6 2.0399 -0.7212 1.2493 7 6 1.6352 0.0690 2.4954 8 6 2.1446 -0.6525 3.7446 9 7 1.7565 0.1039 4.9378 10 6 2.0991 -0.3454 6.1614 11 8 2.7285 -1.3766 6.2749 12 6 1.7037 0.4265 7.3786 13 8 1.1786 1.5144 7.2630 14 7 1.9302 -0.0857 8.6044 15 6 1.5241 0.6448 9.8146 16 6 0.7071 -0.3082 10.7015 17 7 1.4858 -1.5296 10.9459 18 6 0.8175 -2.3918 11.9298 19 6 0.7919 -1.7003 13.2685 20 1 1.2280 -0.7183 13.3774 21 6 0.2107 -2.3208 14.3539 22 7 0.1889 -1.7175 15.5223 23 14 -0.5443 -4.0190 14.1653 24 1 0.4862 -5.0523 14.4407 25 1 -1.6668 -4.1711 15.1256 26 1 -1.0525 -4.1837 12.7797 27 6 1.7416 -2.2575 9.6959 28 6 2.5956 -1.3872 8.7676 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7995 -1.2055 34 1 1.9527 -0.3834 -3.2441 35 1 1.6053 -1.7197 1.2952 36 1 3.1263 -0.7994 1.2057 37 1 2.0698 1.0675 2.4494 38 1 0.5488 0.1472 2.5390 39 1 1.7096 -1.6509 3.7904 40 1 3.2309 -0.7311 3.7012 41 1 1.2524 0.9276 4.8472 42 1 2.4098 0.9822 10.3531 43 1 0.9124 1.5030 9.5364 44 1 -0.2260 -0.5658 10.2003 45 1 0.4876 0.1794 11.6513 46 1 -0.2034 -2.5911 11.6042 47 1 1.3611 -3.3325 12.0171 48 1 -0.2197 -2.1542 16.2860 49 1 0.7943 -2.4879 9.2086 50 1 2.2725 -3.1836 9.9164 51 1 2.6925 -1.8731 7.7968 52 1 3.5822 -1.2414 9.2075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119227348.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:05 Heat of formation + Delta-G solvation = -133.560825 kcal Electronic energy + Delta-G solvation = -29578.885818 eV Core-core repulsion = 25384.706016 eV Total energy + Delta-G solvation = -4194.179802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07071 -40.09367 -39.04697 -38.82966 -37.20195 -36.14743 -35.31108 -34.39612 -32.18741 -31.89800 -30.66636 -28.08733 -27.53493 -26.85016 -25.31507 -24.26052 -23.26791 -22.66161 -21.97780 -20.96244 -20.61467 -19.10082 -18.56950 -18.30511 -18.09903 -17.35246 -17.02451 -16.64128 -16.45027 -16.17520 -16.12499 -16.01828 -15.72546 -15.48674 -15.21308 -15.08834 -14.98131 -14.50264 -14.40996 -14.20836 -13.85201 -13.68196 -13.32851 -13.30835 -12.96296 -12.88864 -12.82503 -12.56755 -12.43979 -12.33646 -12.26919 -12.17371 -11.94277 -11.85330 -11.73183 -11.53614 -11.46716 -11.37523 -10.84325 -10.78356 -10.36943 -10.19863 -9.93864 -9.09396 -8.28160 -6.31695 0.25644 1.20369 1.35351 1.36346 1.46624 2.03964 2.34128 2.36877 3.04234 3.15646 3.18039 3.34100 3.87805 3.90784 3.91255 4.00377 4.04975 4.15827 4.17805 4.27273 4.35870 4.37093 4.44273 4.51571 4.62109 4.64700 4.66169 4.77316 4.77860 4.80668 4.81571 4.88299 4.92745 4.94894 4.95920 5.07436 5.13639 5.19393 5.20575 5.22912 5.40575 5.47481 5.49959 5.51391 5.85948 5.98151 6.18422 6.27260 6.59606 6.61762 6.74340 6.85918 6.91732 7.31978 8.88023 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025562 B = 0.001648 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.099525 B =16990.531009 C =17412.611482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.069 0.931 4 C 0.075 3.925 5 O -0.597 6.597 6 C -0.105 4.105 7 C -0.126 4.126 8 C 0.115 3.885 9 N -0.685 5.685 10 C 0.515 3.485 11 O -0.522 6.522 12 C 0.501 3.499 13 O -0.549 6.549 14 N -0.577 5.577 15 C 0.121 3.879 16 C 0.057 3.943 17 N -0.541 5.541 18 C 0.171 3.829 19 C -0.517 4.517 20 H 0.042 0.958 21 C 0.010 3.990 22 N -0.946 5.946 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.283 1.283 26 H -0.254 1.254 27 C 0.039 3.961 28 C 0.070 3.930 29 H 0.061 0.939 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.395 0.605 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.419 0.581 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.023 0.977 45 H 0.077 0.923 46 H -0.015 1.015 47 H 0.034 0.966 48 H 0.267 0.733 49 H 0.026 0.974 50 H 0.095 0.905 51 H 0.163 0.837 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 0.432 -36.012 36.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.002 4.002 5 O -0.405 6.405 6 C -0.143 4.143 7 C -0.164 4.164 8 C -0.007 4.007 9 N -0.337 5.337 10 C 0.296 3.704 11 O -0.401 6.401 12 C 0.284 3.716 13 O -0.428 6.428 14 N -0.309 5.309 15 C -0.001 4.001 16 C -0.072 4.072 17 N -0.266 5.266 18 C 0.044 3.956 19 C -0.555 4.555 20 H 0.060 0.940 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.770 3.230 24 H -0.189 1.189 25 H -0.209 1.209 26 H -0.178 1.178 27 C -0.090 4.090 28 C -0.051 4.051 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.257 0.743 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.003 0.997 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.044 0.956 50 H 0.113 0.887 51 H 0.179 0.821 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.583 0.778 -35.205 35.511 hybrid contribution -1.195 -0.699 0.188 1.397 sum 3.388 0.080 -35.017 35.181 Atomic orbital electron populations 1.21821 0.94967 1.01906 1.01608 1.21121 0.96480 1.00168 0.93354 0.91250 1.22317 0.98575 0.94251 0.85060 1.86430 1.82057 1.54327 1.17680 1.21416 1.01880 0.99257 0.91721 1.21796 1.02434 0.99963 0.92187 1.21697 1.01096 0.95626 0.82300 1.45836 1.55153 1.28121 1.04600 1.19898 0.80448 0.84970 0.85054 1.90338 1.40632 1.24558 1.84540 1.20311 0.80122 0.86207 0.84949 1.90727 1.44030 1.21532 1.86528 1.48233 1.56194 1.21593 1.04925 1.21933 1.00020 0.94531 0.83639 1.22337 0.93709 0.92014 0.99159 1.61853 1.48222 1.06805 1.09672 1.19950 0.91809 0.93180 0.90617 1.21241 1.36785 1.04095 0.93423 0.93957 1.25803 0.96248 1.02053 0.94612 1.70043 1.46632 1.40470 1.01490 0.85736 0.78656 0.79827 0.78819 1.18858 1.20865 1.17823 1.22583 0.98857 0.97825 0.89699 1.23376 0.95108 0.81757 1.04876 0.92043 0.93510 0.92511 0.92863 0.92663 0.75544 0.90627 0.90467 0.90393 0.90292 0.90627 0.90468 0.74303 0.89909 0.88329 0.95905 0.90459 0.99720 0.94830 0.92438 0.95600 0.88706 0.82101 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.84 71.98 0.64 -0.79 16 2 C -0.09 -0.78 2.63 -10.79 -0.03 -0.81 16 3 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 4 C 0.08 0.58 6.43 71.98 0.46 1.04 16 5 O -0.60 -6.25 13.19 -148.98 -1.97 -8.22 16 6 C -0.10 -0.61 4.68 30.60 0.14 -0.47 16 7 C -0.13 -0.87 5.08 30.59 0.16 -0.72 16 8 C 0.11 1.26 5.67 86.38 0.49 1.75 16 9 N -0.68 -10.86 5.55 -464.40 -2.58 -13.44 16 10 C 0.52 11.74 7.81 87.27 0.68 12.42 16 11 O -0.52 -13.12 13.03 -3.23 -0.04 -13.17 16 12 C 0.50 13.93 7.77 87.27 0.68 14.60 16 13 O -0.55 -16.87 15.95 -3.25 -0.05 -16.92 16 14 N -0.58 -17.23 3.00 -818.62 -2.46 -19.69 16 15 C 0.12 3.90 6.62 86.50 0.57 4.47 16 16 C 0.06 2.19 5.47 86.54 0.47 2.66 16 17 N -0.54 -22.15 4.62 -898.90 -4.15 -26.31 16 18 C 0.17 8.15 3.79 85.56 0.32 8.48 16 19 C -0.52 -29.56 8.96 25.60 0.23 -29.33 16 20 H 0.04 2.68 7.37 -2.91 -0.02 2.66 16 21 C 0.01 0.60 5.47 84.65 0.46 1.06 16 22 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 23 Si 0.95 43.77 27.47 68.60 1.88 45.66 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.25 -11.09 6.54 99.48 0.65 -10.43 16 27 C 0.04 1.28 5.62 86.39 0.49 1.76 16 28 C 0.07 1.98 6.36 86.35 0.55 2.53 16 29 H 0.06 0.54 6.56 -2.39 -0.02 0.53 16 30 H 0.05 0.59 7.82 -2.38 -0.02 0.58 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.40 0.76 9.12 -74.06 -0.68 0.08 16 35 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.54 6.57 -2.39 -0.02 0.53 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.42 5.82 7.96 -92.71 -0.74 5.08 16 42 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.10 3.04 7.07 -2.39 -0.02 3.02 16 44 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.08 3.38 6.67 -2.39 -0.02 3.36 16 46 H -0.01 -0.71 7.18 -2.39 -0.02 -0.73 16 47 H 0.03 1.55 7.40 -2.39 -0.02 1.53 16 48 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.09 2.87 7.99 -2.39 -0.02 2.85 16 51 H 0.16 4.30 3.92 -75.38 -0.30 4.01 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -72.50 408.52 -3.57 -76.07 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.83 Total: 15.77 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 6.32 Total: 18.65 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -8.89 Total: -117.85 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -2.06 Total: -38.30 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Total: -72.50 -3.57 -76.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119227348.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.489 kcal (2) G-P(sol) polarization free energy of solvation -72.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds