Wall clock time and date at job start Wed Apr 1 2020 01:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00322 * 2 1 4 4 C 1.53006 * 109.46917 * 60.00559 * 3 2 1 5 5 C 1.52996 * 109.47461 * 300.00553 * 3 2 1 6 6 C 1.52998 * 109.47171 * 180.02562 * 3 2 1 7 7 H 1.09002 * 109.47046 * 180.02562 * 6 3 2 8 8 C 1.52996 * 109.47078 * 60.00660 * 6 3 2 9 9 N 1.46505 * 109.47077 * 300.00071 * 6 3 2 10 10 C 1.34776 * 119.99488 * 204.99835 * 9 6 3 11 11 O 1.21341 * 120.00798 * 0.02562 * 10 9 6 12 12 C 1.49461 * 119.99650 * 180.02562 * 10 9 6 13 13 O 1.21347 * 119.99289 * 0.02562 * 12 10 9 14 14 N 1.34767 * 120.00125 * 179.97438 * 12 10 9 15 15 C 1.46505 * 119.99962 * 179.97438 * 14 12 10 16 16 C 1.53030 * 109.46152 * 275.02888 * 15 14 12 17 17 C 1.53195 * 109.31349 * 178.60271 * 16 15 14 18 18 N 1.46920 * 108.76705 * 54.65309 * 17 16 15 19 19 C 1.36937 * 120.62982 * 126.40772 * 18 17 16 20 20 H 1.07995 * 119.99853 * 331.83028 * 19 18 17 21 21 C 1.38813 * 120.00066 * 151.83623 * 19 18 17 22 22 N 1.31621 * 119.99722 * 343.06462 * 21 19 18 23 23 Si 1.86794 * 120.00178 * 163.07098 * 21 19 18 24 24 H 1.48507 * 109.47102 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47464 * 119.99620 * 23 21 19 26 26 H 1.48500 * 109.47266 * 239.99403 * 23 21 19 27 27 C 1.46928 * 118.74129 * 306.39065 * 18 17 16 28 28 C 1.53046 * 109.45663 * 154.97704 * 15 14 12 29 29 H 1.09003 * 109.47216 * 299.99642 * 1 2 3 30 30 H 1.09000 * 109.47109 * 59.99456 * 1 2 3 31 31 H 1.09007 * 109.47404 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46581 * 300.00188 * 4 3 2 33 33 H 1.08996 * 109.47451 * 180.02562 * 4 3 2 34 34 H 1.08996 * 109.47211 * 59.99251 * 4 3 2 35 35 H 1.08999 * 109.47445 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47019 * 299.99853 * 5 3 2 37 37 H 1.09001 * 109.47063 * 59.99183 * 5 3 2 38 38 H 1.08996 * 109.47345 * 60.00326 * 8 6 3 39 39 H 1.09002 * 109.46919 * 180.02562 * 8 6 3 40 40 H 1.08996 * 109.47115 * 299.99216 * 8 6 3 41 41 H 0.96993 * 119.99585 * 25.00516 * 9 6 3 42 42 H 0.97000 * 120.00238 * 0.02562 * 14 12 10 43 43 H 1.09000 * 109.45577 * 35.00881 * 15 14 12 44 44 H 1.09004 * 109.50671 * 298.56809 * 16 15 14 45 45 H 1.09004 * 109.49958 * 58.66668 * 16 15 14 46 46 H 1.09004 * 109.59588 * 294.86788 * 17 16 15 47 47 H 1.08998 * 109.70832 * 174.51344 * 17 16 15 48 48 H 0.97000 * 119.99815 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.58340 * 293.82049 * 27 18 17 50 50 H 1.09002 * 109.70650 * 173.45755 * 27 18 17 51 51 H 1.08998 * 109.49552 * 301.33523 * 28 15 14 52 52 H 1.08997 * 109.49986 * 61.40295 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5589 2.0646 1.2494 5 6 1.5588 2.0648 -1.2491 6 6 3.5354 1.1845 -0.0006 7 1 3.9788 2.1803 -0.0002 8 6 3.9863 0.4256 -1.2503 9 7 3.9682 0.4572 1.1952 10 6 5.2091 0.6456 1.6862 11 8 5.9678 1.4178 1.1381 12 6 5.6508 -0.0968 2.9059 13 8 4.8922 -0.8694 3.4537 14 7 6.8918 0.0911 3.3965 15 6 7.3246 -0.6362 4.5924 16 6 6.8734 0.1231 5.8421 17 6 7.2971 -0.6578 7.0900 18 7 8.7438 -0.9055 7.0242 19 6 9.5615 -0.5437 8.0614 20 1 9.2913 0.2858 8.6979 21 6 10.7376 -1.2432 8.2944 22 7 10.9134 -2.4323 7.7581 23 14 12.0707 -0.4970 9.3693 24 1 11.6313 0.8385 9.8474 25 1 12.3205 -1.3828 10.5347 26 1 13.3203 -0.3533 8.5801 27 6 9.2965 -1.5489 5.8245 28 6 8.8502 -0.7580 4.5908 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.4723 2.1507 1.2494 33 1 2.0018 3.0605 1.2492 34 1 1.8804 1.5236 2.1393 35 1 2.0018 3.0607 -1.2489 36 1 1.8803 1.5239 -2.1392 37 1 0.4721 2.1508 -1.2491 38 1 3.6644 0.9668 -2.1399 39 1 5.0729 0.3391 -1.2505 40 1 3.5431 -0.5701 -1.2503 41 1 3.3616 -0.1598 1.6335 42 1 7.4983 0.7084 2.9584 43 1 6.8808 -1.6318 4.5923 44 1 7.3367 1.1098 5.8555 45 1 5.7887 0.2302 5.8310 46 1 6.7649 -1.6085 7.1246 47 1 7.0660 -0.0772 7.9831 48 1 11.7351 -2.9212 7.9213 49 1 8.9273 -2.5722 5.7558 50 1 10.3851 -1.5561 5.8798 51 1 9.1726 -1.2783 3.6889 52 1 9.2946 0.2369 4.6154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119689375.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:14 Heat of formation + Delta-G solvation = -99.333176 kcal Electronic energy + Delta-G solvation = -30879.850142 eV Core-core repulsion = 26687.154562 eV Total energy + Delta-G solvation = -4192.695579 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.87546 -39.77511 -38.56028 -37.29309 -35.75522 -34.49385 -32.80223 -32.11432 -30.36327 -30.17581 -29.47488 -27.90851 -27.27773 -25.81162 -24.53626 -23.09705 -22.26016 -21.57407 -20.52594 -20.14951 -19.48403 -18.38284 -17.30912 -16.78020 -16.44374 -16.15955 -15.78673 -15.60011 -15.45217 -14.96216 -14.73354 -14.32672 -14.15203 -13.85764 -13.72076 -13.60884 -13.49005 -13.10634 -12.99549 -12.89497 -12.66434 -12.56532 -12.42184 -12.40544 -12.14888 -11.71905 -11.60608 -11.48564 -11.43240 -11.13952 -10.98649 -10.85073 -10.74058 -10.49731 -10.30256 -10.05806 -10.04888 -9.83492 -9.68202 -9.43231 -9.38720 -8.84202 -8.47502 -6.69830 -5.80358 -3.22687 1.47112 2.36417 3.20615 3.31338 3.37044 3.45220 3.47436 3.69537 4.08262 4.34926 4.44916 4.49155 4.54603 4.87831 4.92487 4.93431 5.00127 5.09231 5.12296 5.28207 5.29506 5.29987 5.33374 5.38335 5.47270 5.48022 5.53635 5.55161 5.65915 5.77346 5.82023 5.99900 6.04409 6.10229 6.18674 6.28051 6.48582 6.50460 6.55678 6.72181 6.74602 6.78967 6.95509 7.02299 7.30196 7.46367 7.61968 7.78128 7.80129 8.11326 8.43721 9.19797 9.82851 10.39622 11.28653 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029868 B = 0.001987 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.239966 B =14089.318183 C =14329.098962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.103 3.897 4 C -0.182 4.182 5 C -0.179 4.179 6 C 0.158 3.842 7 H 0.102 0.898 8 C -0.164 4.164 9 N -0.693 5.693 10 C 0.508 3.492 11 O -0.524 6.524 12 C 0.502 3.498 13 O -0.523 6.523 14 N -0.690 5.690 15 C 0.148 3.852 16 C -0.140 4.140 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.251 4.251 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.175 3.825 28 C -0.148 4.148 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.417 0.583 42 H 0.408 0.592 43 H 0.086 0.914 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.057 0.943 48 H 0.254 0.746 49 H 0.022 0.978 50 H 0.093 0.907 51 H 0.056 0.944 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.838 8.203 -19.479 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.063 3.937 4 C -0.239 4.239 5 C -0.236 4.236 6 C 0.054 3.946 7 H 0.120 0.880 8 C -0.223 4.223 9 N -0.347 5.347 10 C 0.289 3.711 11 O -0.400 6.400 12 C 0.282 3.718 13 O -0.399 6.399 14 N -0.341 5.341 15 C 0.046 3.954 16 C -0.180 4.180 17 C 0.021 3.979 18 N -0.316 5.316 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.732 3.268 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.048 3.952 28 C -0.187 4.187 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.255 0.745 42 H 0.243 0.757 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.040 0.960 50 H 0.111 0.889 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.572 7.923 -19.425 28.690 hybrid contribution 0.441 0.561 0.475 0.857 sum -19.131 8.484 -18.949 28.232 Atomic orbital electron populations 1.22818 0.81131 1.02917 1.00246 1.87967 1.19814 1.26573 1.95019 1.21764 0.92450 0.84136 0.95311 1.22440 1.02030 1.01228 0.98197 1.22446 1.02199 1.01120 0.97854 1.21063 0.91069 0.97340 0.85123 0.87982 1.22191 1.02152 1.01536 0.96374 1.45771 1.14555 1.45444 1.28914 1.20401 0.82692 0.82764 0.85211 1.90741 1.52915 1.36065 1.60293 1.20016 0.83568 0.83318 0.84917 1.90763 1.52962 1.36071 1.60146 1.46214 1.13602 1.44800 1.29524 1.21235 0.96118 0.95698 0.82390 1.22400 0.99598 0.99994 0.96022 1.20869 0.86259 0.96401 0.94362 1.44107 1.00743 1.70778 1.15931 1.19226 1.01582 1.09574 1.07723 0.91570 1.25065 1.00415 0.95008 0.99238 1.70032 1.26150 1.10729 1.47825 0.86220 0.82035 0.78671 0.79829 1.20255 1.21734 1.21554 1.20752 1.00470 0.92124 0.81860 1.22569 0.92459 1.02392 1.01330 0.93616 0.93740 0.89509 0.91717 0.91135 0.91193 0.91005 0.90892 0.91588 0.91248 0.91842 0.91226 0.74532 0.75659 0.89569 0.92050 0.92650 0.96087 0.92410 0.93627 0.95987 0.88886 0.92485 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.21 101.05 1.03 1.17 16 2 O -0.37 -3.00 9.18 -35.23 -0.32 -3.32 16 3 C 0.10 0.73 0.51 -90.62 -0.05 0.68 16 4 C -0.18 -1.23 8.09 37.16 0.30 -0.93 16 5 C -0.18 -0.92 7.90 37.16 0.29 -0.63 16 6 C 0.16 1.39 1.94 -67.93 -0.13 1.26 16 7 H 0.10 0.93 7.58 -51.93 -0.39 0.54 16 8 C -0.16 -1.39 8.98 37.16 0.33 -1.05 16 9 N -0.69 -7.51 4.35 -54.23 -0.24 -7.75 16 10 C 0.51 6.77 7.85 -11.58 -0.09 6.68 16 11 O -0.52 -7.73 16.14 5.50 0.09 -7.64 16 12 C 0.50 7.62 7.85 -11.58 -0.09 7.52 16 13 O -0.52 -9.04 16.14 5.50 0.09 -8.95 16 14 N -0.69 -10.41 5.07 -54.19 -0.27 -10.69 16 15 C 0.15 2.59 2.42 -67.89 -0.16 2.42 16 16 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 17 C 0.15 3.15 6.52 -3.71 -0.02 3.12 16 18 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 19 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 20 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 23 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 28 C -0.15 -2.72 5.55 -26.61 -0.15 -2.87 16 29 H 0.05 0.23 6.42 -51.93 -0.33 -0.10 16 30 H 0.04 0.20 6.42 -51.93 -0.33 -0.14 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.36 6.54 -51.93 -0.34 0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.37 6.43 -51.93 -0.33 0.04 16 37 H 0.07 0.28 6.54 -51.93 -0.34 -0.06 16 38 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 41 H 0.42 4.55 7.46 -40.82 -0.30 4.25 16 42 H 0.41 5.62 8.07 -40.82 -0.33 5.29 16 43 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 2.42 6.07 -51.93 -0.31 2.10 16 51 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 405.45 15.07 6.11 6.11 Total: -1.00 -31.12 405.45 -7.33 -38.45 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.72 Total: 6.14 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 0.86 Total: 11.72 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.41 Total: -59.03 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.15 Total: -19.92 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.12 -7.33 -38.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119689375.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.882 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds