Wall clock time and date at job start Wed Apr 1 2020 00:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47019 * 2 1 4 4 O 1.42890 * 109.47154 * 120.00318 * 2 1 3 5 5 C 1.42908 * 114.00201 * 89.99435 * 4 2 1 6 6 C 1.52999 * 109.47213 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47042 * 180.02562 * 6 5 4 8 8 O 1.21287 * 119.99858 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99865 * 180.02562 * 7 6 5 10 10 C 1.47743 * 121.65619 * 359.71655 * 9 7 6 11 11 C 1.53599 * 108.47531 * 87.80051 * 10 9 7 12 12 C 1.50700 * 109.49873 * 55.02506 * 11 10 9 13 13 O 1.21280 * 120.24243 * 65.67268 * 12 11 10 14 14 N 1.35514 * 119.51914 * 245.65927 * 12 11 10 15 15 C 1.47109 * 118.11006 * 179.97438 * 14 12 11 16 16 C 1.52990 * 109.17697 * 259.43734 * 15 14 12 17 17 N 1.47772 * 108.82161 * 57.74103 * 16 15 14 18 18 C 1.36943 * 121.63801 * 83.03253 * 17 16 15 19 19 H 1.07988 * 120.00765 * 330.89775 * 18 17 16 20 20 C 1.38816 * 119.99607 * 150.89350 * 18 17 16 21 21 N 1.31622 * 119.99859 * 345.33833 * 20 18 17 22 22 Si 1.86792 * 120.00126 * 165.33520 * 20 18 17 23 23 H 1.48504 * 109.47118 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47357 * 120.00069 * 22 20 18 25 25 H 1.48505 * 109.47235 * 240.00279 * 22 20 18 26 26 C 1.47735 * 116.71112 * 263.01066 * 17 16 15 27 27 C 1.47772 * 121.65125 * 180.02562 * 9 7 6 28 28 H 1.09003 * 109.46906 * 299.99749 * 1 2 3 29 29 H 1.08997 * 109.47229 * 59.99442 * 1 2 3 30 30 H 1.08995 * 109.47239 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46501 * 240.00010 * 2 1 3 32 32 H 1.09010 * 109.47023 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47575 * 300.00346 * 3 2 1 34 34 H 1.08998 * 109.47476 * 60.00606 * 3 2 1 35 35 H 1.08997 * 109.47248 * 300.00089 * 5 4 2 36 36 H 1.09001 * 109.46919 * 59.99994 * 5 4 2 37 37 H 1.08997 * 109.47289 * 300.00313 * 6 5 4 38 38 H 1.09001 * 109.46980 * 60.00281 * 6 5 4 39 39 H 1.08999 * 109.58292 * 207.43204 * 10 9 7 40 40 H 1.08995 * 109.58285 * 327.84683 * 10 9 7 41 41 H 1.09001 * 109.50053 * 294.97910 * 11 10 9 42 42 H 1.09005 * 109.40662 * 174.99997 * 11 10 9 43 43 H 0.97003 * 120.94829 * 359.93420 * 14 12 11 44 44 H 1.09001 * 109.52267 * 139.52394 * 15 14 12 45 45 H 1.09009 * 109.51943 * 19.33966 * 15 14 12 46 46 H 1.09002 * 109.57226 * 297.94834 * 16 15 14 47 47 H 1.09000 * 109.69082 * 177.61360 * 16 15 14 48 48 H 0.97003 * 119.99638 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.57881 * 14.87988 * 26 17 16 50 50 H 1.08996 * 109.57672 * 254.47439 * 26 17 16 51 51 H 1.09003 * 109.58743 * 69.84056 * 27 9 7 52 52 H 1.08995 * 109.58824 * 190.11896 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2000 -2.0783 0.9885 6 6 2.7091 -2.6926 2.2940 7 6 2.9139 -4.1737 2.1059 8 8 2.6765 -4.6873 1.0331 9 7 3.3607 -4.9276 3.1298 10 6 3.6671 -4.3392 4.4499 11 6 2.3812 -4.3321 5.2900 12 6 1.8166 -5.7277 5.3571 13 8 2.4269 -6.6068 5.9277 14 7 0.6217 -5.9933 4.7755 15 6 0.0999 -7.3662 4.8593 16 6 0.3701 -8.0880 3.5377 17 7 1.8237 -8.0689 3.2725 18 6 2.6685 -8.9887 3.8342 19 1 2.4298 -9.4272 4.7917 20 6 3.8319 -9.3574 3.1727 21 7 3.9884 -9.0584 1.9005 22 14 5.1752 -10.2776 4.0880 23 1 4.7573 -10.4909 5.4970 24 1 5.4070 -11.5918 3.4367 25 1 6.4289 -9.4822 4.0580 26 6 2.3203 -7.0089 2.3712 27 6 3.5750 -6.3826 2.9857 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.2537 -2.5434 0.7124 36 1 2.9319 -2.2468 0.1985 37 1 3.6554 -2.2274 2.5697 38 1 1.9775 -2.5241 3.0843 39 1 4.4274 -4.9394 4.9499 40 1 4.0305 -3.3198 4.3201 41 1 1.6505 -3.6661 4.8312 42 1 2.6086 -3.9834 6.2974 43 1 0.1243 -5.2978 4.3175 44 1 -0.9737 -7.3371 5.0456 45 1 0.5974 -7.8959 5.6718 46 1 -0.1553 -7.5790 2.7296 47 1 0.0246 -9.1196 3.6053 48 1 4.8015 -9.3158 1.4383 49 1 1.5538 -6.2435 2.2501 50 1 2.5654 -7.4401 1.4006 51 1 4.4306 -6.5633 2.3351 52 1 3.7613 -6.8233 3.9651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131330463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:26 Heat of formation + Delta-G solvation = -110.435145 kcal Electronic energy + Delta-G solvation = -32930.048718 eV Core-core repulsion = 28736.871721 eV Total energy + Delta-G solvation = -4193.176997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33753 -40.14861 -39.19571 -37.68125 -36.77805 -35.31285 -34.26339 -33.19650 -32.13116 -31.71373 -30.49183 -28.35390 -28.05399 -26.49090 -25.04545 -24.74647 -23.07119 -22.22091 -21.99670 -21.14530 -19.77124 -18.70477 -18.27027 -17.85390 -17.45280 -17.20026 -16.91033 -16.61695 -16.38006 -16.13800 -15.77685 -15.53624 -15.23454 -15.06764 -14.72763 -14.62697 -14.47182 -14.20914 -13.93547 -13.73872 -13.54897 -13.29266 -13.22310 -13.11381 -13.03520 -12.93739 -12.79510 -12.70772 -12.39324 -12.32900 -12.25115 -12.05356 -11.97388 -11.85833 -11.77934 -11.60438 -11.55422 -10.74977 -10.61779 -10.52604 -10.47715 -9.86869 -9.59204 -8.51552 -7.69846 -5.25723 1.39143 1.42766 1.53078 1.71164 1.88592 2.04115 2.52112 2.65625 2.77829 3.36059 3.64472 3.70961 3.94434 3.95728 4.01898 4.11521 4.16988 4.21775 4.33402 4.35217 4.43215 4.51363 4.54059 4.58589 4.68613 4.71254 4.75077 4.78290 4.80427 4.84670 4.86792 4.92018 4.96113 4.97728 5.02032 5.03948 5.06989 5.23032 5.30625 5.32574 5.37949 5.66553 5.76440 5.81138 5.85913 6.28457 6.39298 6.62992 6.89022 7.19746 7.28901 7.67463 7.88937 8.46545 9.25052 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.003420 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.482072 B = 8184.845364 C = 8671.859935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.390 6.390 5 C 0.084 3.916 6 C -0.123 4.123 7 C 0.511 3.489 8 O -0.583 6.583 9 N -0.615 5.615 10 C 0.112 3.888 11 C -0.150 4.150 12 C 0.508 3.492 13 O -0.571 6.571 14 N -0.716 5.716 15 C 0.102 3.898 16 C 0.120 3.880 17 N -0.599 5.599 18 C -0.213 4.213 19 H 0.050 0.950 20 C -0.046 4.046 21 N -0.925 5.925 22 Si 0.943 3.057 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.197 3.803 27 C 0.139 3.861 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.407 0.593 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.242 0.758 49 H 0.038 0.962 50 H 0.007 0.993 51 H 0.014 0.986 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 23.113 2.686 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 C -0.202 4.202 4 O -0.310 6.310 5 C 0.007 3.993 6 C -0.162 4.162 7 C 0.301 3.699 8 O -0.463 6.463 9 N -0.348 5.348 10 C -0.011 4.011 11 C -0.190 4.190 12 C 0.296 3.704 13 O -0.449 6.449 14 N -0.368 5.368 15 C -0.025 4.025 16 C -0.007 4.007 17 N -0.323 5.323 18 C -0.344 4.344 19 H 0.067 0.933 20 C -0.241 4.241 21 N -0.572 5.572 22 Si 0.774 3.226 23 H -0.200 1.200 24 H -0.221 1.221 25 H -0.221 1.221 26 C 0.072 3.928 27 C 0.015 3.985 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.129 0.871 42 H 0.148 0.852 43 H 0.243 0.757 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.025 0.975 51 H 0.032 0.968 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.365 22.263 2.604 23.594 hybrid contribution 0.882 -1.282 -0.427 1.613 sum -6.483 20.981 2.177 22.068 Atomic orbital electron populations 1.22279 0.95223 1.02138 1.03348 1.22294 0.94404 0.94391 0.87572 1.21855 1.01592 0.93397 1.03372 1.87807 1.86908 1.19567 1.36762 1.21996 0.99587 0.81185 0.96553 1.21480 1.06024 0.88723 0.99962 1.20981 0.76295 0.89817 0.82796 1.90737 1.52601 1.75470 1.27479 1.49062 1.64845 1.08465 1.12442 1.22152 0.96178 1.01427 0.81302 1.22337 0.99008 0.93243 1.04452 1.21216 0.80693 0.91196 0.77309 1.90728 1.59251 1.49683 1.45251 1.46005 1.21940 1.11583 1.57264 1.21986 0.98416 0.83271 0.98806 1.21681 0.84759 0.98388 0.95880 1.44660 1.02011 1.30701 1.54891 1.18904 1.01621 1.15553 0.98311 0.93254 1.25550 1.01982 1.01081 0.95494 1.70213 1.26502 1.51819 1.08688 0.85540 0.80378 0.78156 0.78557 1.20036 1.22056 1.22121 1.20749 0.92226 0.87462 0.92399 1.21932 0.97786 0.77755 1.00978 0.91505 0.90222 0.93370 0.92584 0.92338 0.89646 0.91590 0.93536 0.94114 0.86025 0.85418 0.91052 0.85040 0.87102 0.85184 0.75703 0.88434 0.92665 0.93122 0.93603 0.94863 0.94331 0.97509 0.96754 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.53 71.98 0.69 -1.78 16 2 C 0.07 1.17 3.34 30.59 0.10 1.28 16 3 C -0.15 -1.81 9.56 71.98 0.69 -1.12 16 4 O -0.39 -7.88 9.99 -148.98 -1.49 -9.37 16 5 C 0.08 1.90 5.04 71.98 0.36 2.27 16 6 C -0.12 -2.46 4.75 29.85 0.14 -2.32 16 7 C 0.51 16.31 7.05 87.66 0.62 16.93 16 8 O -0.58 -24.65 14.35 -3.05 -0.04 -24.69 16 9 N -0.61 -20.51 2.42 -814.01 -1.97 -22.48 16 10 C 0.11 2.62 5.55 86.34 0.48 3.10 16 11 C -0.15 -3.01 6.20 30.05 0.19 -2.82 16 12 C 0.51 16.22 4.75 87.54 0.42 16.64 16 13 O -0.57 -24.62 15.08 -3.03 -0.05 -24.67 16 14 N -0.72 -20.49 4.70 -460.72 -2.16 -22.65 16 15 C 0.10 3.31 6.58 86.26 0.57 3.87 16 16 C 0.12 4.78 6.09 86.13 0.52 5.31 16 17 N -0.60 -30.02 2.27 -695.39 -1.58 -31.59 16 18 C -0.21 -12.00 8.37 84.03 0.70 -11.29 16 19 H 0.05 2.89 7.87 -2.92 -0.02 2.87 16 20 C -0.05 -2.65 4.33 84.86 0.37 -2.29 16 21 N -0.93 -56.74 10.36 21.65 0.22 -56.51 16 22 Si 0.94 48.02 29.58 68.60 2.03 50.05 16 23 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 25 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 26 C 0.20 9.86 3.62 86.18 0.31 10.18 16 27 C 0.14 6.51 3.86 86.17 0.33 6.85 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.79 7.87 -2.39 -0.02 0.77 16 31 H 0.06 0.97 7.79 -2.39 -0.02 0.95 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 1.15 7.83 -2.39 -0.02 1.13 16 36 H 0.04 1.05 8.04 -2.39 -0.02 1.03 16 37 H 0.12 1.92 7.52 -2.39 -0.02 1.90 16 38 H 0.13 1.81 7.06 -2.39 -0.02 1.79 16 39 H 0.07 1.99 7.80 -2.39 -0.02 1.97 16 40 H 0.13 1.82 6.77 -2.39 -0.02 1.81 16 41 H 0.11 1.47 6.85 -2.39 -0.02 1.45 16 42 H 0.13 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.41 8.93 8.71 -92.71 -0.81 8.12 16 44 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.05 2.18 7.01 -2.38 -0.02 2.16 16 46 H 0.05 1.89 7.76 -2.39 -0.02 1.87 16 47 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 48 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 49 H 0.04 1.79 5.89 -2.39 -0.01 1.78 16 50 H 0.01 0.43 6.73 -2.39 -0.02 0.41 16 51 H 0.01 0.78 7.73 -2.39 -0.02 0.76 16 52 H 0.08 4.19 4.67 -2.39 -0.01 4.18 16 Total: -1.00 -81.16 396.00 1.56 -79.60 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.11 Total: 17.54 kcal Atomic # 6 Polarization: 38.29 SS G_CDS: 6.49 Total: 44.78 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -5.49 Total: -133.24 kcal Atomic # 8 Polarization: -57.15 SS G_CDS: -1.58 Total: -58.72 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -81.16 1.56 -79.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131330463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.838 kcal (2) G-P(sol) polarization free energy of solvation -81.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds