Wall clock time and date at job start Wed Apr 1 2020 00:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00066 * 2 1 4 4 C 1.53000 * 109.47341 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47589 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47479 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99796 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00098 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00185 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50520 * 35.07631 * 9 8 6 11 11 C 1.53124 * 109.50361 * 275.00500 * 9 8 6 12 12 C 1.53124 * 109.16086 * 182.36283 * 11 9 8 13 13 C 1.53036 * 109.27753 * 57.65319 * 12 11 9 14 14 H 1.09002 * 109.46647 * 60.83695 * 13 12 11 15 15 C 1.52995 * 109.45437 * 180.80797 * 13 12 11 16 16 N 1.46846 * 109.52511 * 300.82107 * 13 12 11 17 17 C 1.46901 * 111.00341 * 185.83844 * 16 13 12 18 18 C 1.50702 * 109.47227 * 163.93039 * 17 16 13 19 19 O 1.21296 * 119.99778 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99921 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00033 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00244 * 359.97438 * 21 20 18 23 23 C 1.38959 * 119.99980 * 179.72200 * 21 20 18 24 24 N 1.31416 * 119.99630 * 180.27476 * 23 21 20 25 25 Si 1.86800 * 119.99948 * 0.27494 * 23 21 20 26 26 H 1.48503 * 109.47010 * 89.99971 * 25 23 21 27 27 H 1.48496 * 109.46877 * 209.99825 * 25 23 21 28 28 H 1.48494 * 109.46985 * 329.99721 * 25 23 21 29 29 C 1.46846 * 111.19773 * 61.74138 * 16 13 12 30 30 H 1.08997 * 109.47451 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47337 * 300.00021 * 1 2 3 32 32 H 1.09010 * 109.46946 * 60.00052 * 1 2 3 33 33 H 1.08999 * 109.47125 * 60.00224 * 3 2 1 34 34 H 1.08996 * 109.47272 * 299.99734 * 3 2 1 35 35 H 1.09005 * 109.46801 * 60.00109 * 4 3 2 36 36 H 1.09000 * 109.47548 * 300.00571 * 4 3 2 37 37 H 1.09005 * 109.46854 * 60.00271 * 5 4 3 38 38 H 1.09000 * 109.47248 * 300.00885 * 5 4 3 39 39 H 0.97005 * 120.00244 * 0.02562 * 8 6 5 40 40 H 1.08994 * 109.52282 * 62.45724 * 11 9 8 41 41 H 1.09002 * 109.52010 * 302.26329 * 11 9 8 42 42 H 1.08997 * 109.50592 * 297.71273 * 12 11 9 43 43 H 1.09001 * 109.53196 * 177.60832 * 12 11 9 44 44 H 1.09007 * 109.47553 * 187.49537 * 15 13 12 45 45 H 1.08996 * 109.47254 * 307.49730 * 15 13 12 46 46 H 1.09001 * 109.46960 * 67.50157 * 15 13 12 47 47 H 1.09001 * 109.46971 * 43.93128 * 17 16 13 48 48 H 1.09000 * 109.47206 * 283.93401 * 17 16 13 49 49 H 0.97006 * 120.00460 * 359.97438 * 20 18 17 50 50 H 0.97002 * 119.99476 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.46379 * 58.27788 * 29 16 13 52 52 H 1.09005 * 109.46452 * 178.24403 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 0.0000 7 8 6.1816 1.3684 0.0000 8 7 6.4240 3.5737 0.0000 9 6 7.8844 3.4580 -0.0006 10 1 8.1806 2.5912 -0.5913 11 6 8.3846 3.2918 1.4371 12 6 9.9146 3.2310 1.4330 13 6 10.4691 4.5022 0.7861 14 1 10.1521 5.3712 1.3628 15 6 11.9974 4.4367 0.7617 16 7 9.9621 4.6152 -0.5875 17 6 10.5820 5.7492 -1.2859 18 6 10.3567 5.6095 -2.7694 19 8 9.7400 4.6589 -3.2022 20 7 10.8405 6.5406 -3.6151 21 6 10.6352 6.4138 -4.9646 22 1 10.0861 5.5674 -5.3501 23 6 11.1290 7.3769 -5.8361 24 7 10.9274 7.2580 -7.1293 25 14 12.0793 8.8404 -5.1695 26 1 13.5254 8.5074 -5.1127 27 1 11.8754 10.0105 -6.0608 28 1 11.5925 9.1667 -3.8051 29 6 8.4977 4.7227 -0.6058 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8574 0.6436 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 3.8358 3.1238 0.8896 38 1 3.8364 3.1228 -0.8904 39 1 6.0069 4.4494 0.0004 40 1 7.9845 2.3692 1.8575 41 1 8.0554 4.1398 2.0376 42 1 10.2428 2.3607 0.8647 43 1 10.2791 3.1553 2.4575 44 1 12.3969 5.3934 0.4250 45 1 12.3679 4.2207 1.7637 46 1 12.3164 3.6493 0.0787 47 1 11.6524 5.7613 -1.0805 48 1 10.1345 6.6797 -0.9365 49 1 11.3334 7.3010 -3.2689 50 1 11.2725 7.9302 -7.7377 51 1 8.1899 5.5906 -0.0226 52 1 8.1547 4.8362 -1.6343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131851958.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:38 Heat of formation + Delta-G solvation = -119.258043 kcal Electronic energy + Delta-G solvation = -30165.283429 eV Core-core repulsion = 25971.723843 eV Total energy + Delta-G solvation = -4193.559586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.25873 -39.21645 -38.21867 -37.76536 -35.10946 -34.00003 -33.85161 -32.70389 -31.65614 -31.32459 -28.33941 -27.83600 -26.60327 -25.60267 -24.49199 -22.96903 -22.41339 -21.18833 -20.40892 -19.72075 -19.30369 -18.25865 -17.45023 -16.64998 -16.54718 -16.40170 -15.95944 -15.51699 -15.30373 -15.04926 -14.91872 -14.77423 -14.43326 -14.05305 -13.95392 -13.75156 -13.45373 -13.34599 -13.01675 -12.58789 -12.54736 -12.41149 -12.27817 -12.19713 -11.99933 -11.92118 -11.87714 -11.56101 -11.33052 -11.19752 -11.17574 -10.98689 -10.90915 -10.69324 -10.59486 -10.35272 -10.00264 -9.97052 -9.82937 -9.53985 -9.05825 -8.57995 -8.16851 -7.97243 -6.30246 -3.81432 2.60854 2.93049 3.01321 3.06357 3.14465 3.49953 3.75751 3.93061 4.10367 4.49623 4.65427 4.71443 4.76660 4.78555 4.83626 4.90262 4.96126 4.98585 5.06193 5.08640 5.11228 5.18537 5.22076 5.29006 5.29718 5.35775 5.42016 5.47769 5.53497 5.55496 5.65361 5.78682 5.84865 5.85561 5.94149 5.94356 6.00837 6.02612 6.11953 6.19832 6.23359 6.39808 6.46729 6.82882 7.14333 7.30106 7.45790 7.59739 8.15857 8.20266 8.61630 8.96763 9.43739 9.85531 10.82986 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.002267 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.097719 B =12347.845111 C =14401.069270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.105 4.105 5 C -0.138 4.138 6 C 0.515 3.485 7 O -0.535 6.535 8 N -0.725 5.725 9 C 0.150 3.850 10 H 0.101 0.899 11 C -0.128 4.128 12 C -0.107 4.107 13 C 0.079 3.921 14 H 0.037 0.963 15 C -0.151 4.151 16 N -0.505 5.505 17 C 0.039 3.961 18 C 0.452 3.548 19 O -0.556 6.556 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.054 3.946 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.398 0.602 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.097 0.903 48 H 0.048 0.952 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.027 0.973 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.338 -3.317 21.241 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.178 4.178 6 C 0.301 3.699 7 O -0.412 6.412 8 N -0.376 5.376 9 C 0.045 3.955 10 H 0.119 0.881 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.029 4.029 14 H 0.055 0.945 15 C -0.208 4.208 16 N -0.230 5.230 17 C -0.093 4.093 18 C 0.238 3.762 19 O -0.437 6.437 20 N -0.233 5.233 21 C -0.431 4.431 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.523 5.523 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.203 1.203 28 H -0.196 1.196 29 C -0.075 4.075 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.231 0.769 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.115 0.885 48 H 0.066 0.934 49 H 0.202 0.798 50 H 0.083 0.917 51 H 0.045 0.955 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.108 -5.280 20.462 24.355 hybrid contribution 0.140 2.896 0.721 2.988 sum -11.969 -2.384 21.183 24.447 Atomic orbital electron populations 1.22745 0.81023 1.02817 0.99931 1.87896 1.19680 1.28025 1.95404 1.22558 0.94152 0.84710 1.00148 1.21218 0.92034 0.95875 1.05119 1.21549 0.92248 0.99420 1.04609 1.20517 0.89291 0.84301 0.75769 1.90727 1.75041 1.26518 1.48882 1.45996 1.07107 1.08889 1.75621 1.20929 0.78139 1.00168 0.96226 0.88146 1.21968 0.96096 1.01929 0.96700 1.21564 0.94477 0.98305 1.00192 1.21687 0.95433 0.97144 0.88676 0.94480 1.21952 0.94206 1.02641 1.02006 1.61342 1.04854 1.42596 1.14239 1.21999 1.00982 0.91911 0.94374 1.19688 0.84760 0.84855 0.86914 1.90564 1.43296 1.32005 1.77863 1.42218 1.51054 1.22566 1.07483 1.19420 1.34144 1.10428 0.79146 0.86304 1.25040 0.97961 0.98058 0.95190 1.69627 1.45389 1.35644 1.01591 0.86675 0.80878 0.82969 0.78857 1.19628 1.20264 1.19605 1.22303 0.87835 0.94605 1.02708 0.89602 0.94137 0.94022 0.93340 0.93133 0.90074 0.90312 0.88845 0.88526 0.76851 0.91388 0.92411 0.90522 0.91351 0.92452 0.92203 0.91145 0.88461 0.93373 0.79819 0.91668 0.95500 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.97 10.70 -35.23 -0.38 -4.35 16 3 C 0.06 0.49 5.94 37.16 0.22 0.71 16 4 C -0.10 -1.01 4.87 -26.73 -0.13 -1.14 16 5 C -0.14 -1.12 5.70 -27.89 -0.16 -1.28 16 6 C 0.52 6.28 7.79 -10.99 -0.09 6.20 16 7 O -0.54 -8.86 15.65 5.56 0.09 -8.77 16 8 N -0.73 -8.08 5.08 -53.73 -0.27 -8.36 16 9 C 0.15 2.03 2.61 -67.85 -0.18 1.85 16 10 H 0.10 1.74 7.58 -51.93 -0.39 1.35 16 11 C -0.13 -1.48 5.58 -26.60 -0.15 -1.62 16 12 C -0.11 -1.20 5.37 -26.65 -0.14 -1.34 16 13 C 0.08 0.94 2.44 -67.73 -0.17 0.78 16 14 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 15 C -0.15 -1.63 8.57 37.15 0.32 -1.31 16 16 N -0.51 -7.79 4.12 -228.12 -0.94 -8.73 16 17 C 0.04 0.63 5.26 -4.97 -0.03 0.60 16 18 C 0.45 10.08 7.47 -10.99 -0.08 9.99 16 19 O -0.56 -14.67 14.42 5.54 0.08 -14.59 16 20 N -0.59 -13.92 5.09 -10.96 -0.06 -13.97 16 21 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 22 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 23 C 0.04 1.10 5.50 -17.46 -0.10 1.00 16 24 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 25 Si 0.88 19.21 27.74 -169.99 -4.72 14.49 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.27 -5.35 6.51 56.52 0.37 -4.98 16 29 C 0.05 0.79 4.58 -3.83 -0.02 0.77 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.24 8.14 -51.92 -0.42 -0.19 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.40 3.28 8.60 -40.82 -0.35 2.93 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.59 6.44 -51.92 -0.33 0.26 16 45 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 1.40 5.55 -51.93 -0.29 1.11 16 48 H 0.05 0.69 8.05 -51.93 -0.42 0.28 16 49 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 50 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 51 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.10 1.82 6.35 -51.93 -0.33 1.49 16 LS Contribution 412.70 15.07 6.22 6.22 Total: -1.00 -35.42 412.70 -8.02 -43.44 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -9.09 Total: 11.67 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 0.27 Total: 7.90 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.49 Total: -56.01 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.21 Total: -27.71 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.72 Total: 14.49 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.42 -8.02 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131851958.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.819 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds