Wall clock time and date at job start Wed Apr 1 2020 00:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99752 * 2 1 4 4 C 1.52997 * 109.47429 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47478 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47322 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99828 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00010 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99870 * 180.27669 * 8 6 5 10 10 H 1.09003 * 109.50036 * 324.63764 * 9 8 6 11 11 C 1.53116 * 109.50510 * 84.71888 * 9 8 6 12 12 C 1.53123 * 109.15658 * 62.28948 * 11 9 8 13 13 C 1.53033 * 109.28117 * 57.65482 * 12 11 9 14 14 H 1.09001 * 109.46192 * 60.83401 * 13 12 11 15 15 C 1.53000 * 109.46478 * 180.80384 * 13 12 11 16 16 N 1.46844 * 109.52099 * 300.81896 * 13 12 11 17 17 C 1.46907 * 110.99812 * 185.84059 * 16 13 12 18 18 C 1.50696 * 109.47139 * 295.98647 * 17 16 13 19 19 O 1.21292 * 119.99797 * 5.41372 * 18 17 16 20 20 N 1.34773 * 120.00066 * 185.41048 * 18 17 16 21 21 C 1.37099 * 119.99753 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00450 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99749 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47489 * 89.99908 * 25 23 21 27 27 H 1.48495 * 109.47388 * 210.00094 * 25 23 21 28 28 H 1.48500 * 109.47359 * 330.00066 * 25 23 21 29 29 C 1.46840 * 111.20045 * 61.74168 * 16 13 12 30 30 H 1.09001 * 109.47861 * 299.99919 * 1 2 3 31 31 H 1.09003 * 109.47481 * 60.00294 * 1 2 3 32 32 H 1.09005 * 109.46920 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47548 * 59.99698 * 3 2 1 34 34 H 1.08998 * 109.47468 * 299.99625 * 3 2 1 35 35 H 1.08999 * 109.47288 * 59.99644 * 4 3 2 36 36 H 1.08997 * 109.47295 * 300.00180 * 4 3 2 37 37 H 1.09001 * 109.47233 * 60.00548 * 5 4 3 38 38 H 1.08998 * 109.47515 * 300.00098 * 5 4 3 39 39 H 0.97000 * 120.00301 * 359.97438 * 8 6 5 40 40 H 1.08993 * 109.51999 * 182.19029 * 11 9 8 41 41 H 1.08996 * 109.52452 * 302.31922 * 11 9 8 42 42 H 1.09004 * 109.49894 * 177.59901 * 12 11 9 43 43 H 1.09000 * 109.50520 * 297.71069 * 12 11 9 44 44 H 1.09005 * 109.46827 * 55.68080 * 15 13 12 45 45 H 1.08991 * 109.47375 * 175.68366 * 15 13 12 46 46 H 1.09003 * 109.46766 * 295.68969 * 15 13 12 47 47 H 1.08993 * 109.47197 * 55.98950 * 17 16 13 48 48 H 1.09004 * 109.46978 * 175.98954 * 17 16 13 49 49 H 0.96995 * 120.00101 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00612 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.46353 * 178.23984 * 29 16 13 52 52 H 1.09005 * 109.46311 * 58.27106 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6599 2.4636 0.0000 7 8 6.1815 1.3687 0.0009 8 7 6.4238 3.5740 0.0000 9 6 7.8842 3.4584 -0.0061 10 1 8.1832 2.5927 0.5850 11 6 8.3777 3.2895 -1.4457 12 6 8.0052 4.5356 -2.2540 13 6 8.6170 5.7707 -1.5890 14 1 9.7025 5.6733 -1.5710 15 6 8.2307 7.0208 -2.3822 16 7 8.1134 5.8883 -0.2147 17 6 8.5707 7.1375 0.4086 18 6 10.0725 7.1168 0.5320 19 8 10.7079 6.2020 0.0519 20 7 10.7095 8.1148 1.1758 21 6 12.0758 8.0962 1.2876 22 1 12.6416 7.2816 0.8602 23 6 12.7326 9.1250 1.9519 24 7 12.0442 10.1159 2.4724 25 14 14.5942 9.1001 2.1036 26 1 15.1951 9.8015 0.9409 27 1 14.9978 9.7852 3.3577 28 1 15.0697 7.6936 2.1330 29 6 8.4995 4.7248 0.5937 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6884 1.8465 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6437 -0.8891 36 1 3.8567 0.6441 0.8908 37 1 3.8357 3.1240 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0066 4.4497 -0.0004 40 1 9.4604 3.1646 -1.4473 41 1 7.9090 2.4119 -1.8909 42 1 8.3912 4.4398 -3.2689 43 1 6.9206 4.6386 -2.2848 44 1 7.1453 7.0767 -2.4662 45 1 8.6014 7.9069 -1.8671 46 1 8.6700 6.9691 -3.3784 47 1 8.2685 7.9834 -0.2088 48 1 8.1261 7.2333 1.3991 49 1 10.2014 8.8463 1.5600 50 1 12.5025 10.8338 2.9364 51 1 8.1389 4.8556 1.6140 52 1 9.5855 4.6322 0.6015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131851959.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:42 Heat of formation + Delta-G solvation = -126.449473 kcal Electronic energy + Delta-G solvation = -30649.787389 eV Core-core repulsion = 26455.915959 eV Total energy + Delta-G solvation = -4193.871430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.33976 -39.25953 -38.22716 -37.40311 -34.76261 -33.90783 -33.81800 -32.48090 -31.35840 -31.14862 -28.22404 -27.60092 -26.52324 -25.69617 -24.61769 -22.78935 -22.43461 -21.15351 -20.42045 -19.48339 -18.92413 -17.84672 -17.43945 -16.65293 -16.50330 -16.14102 -15.75762 -15.61005 -15.27193 -15.05798 -14.95923 -14.58427 -14.35515 -14.02589 -13.90225 -13.60087 -13.55764 -13.14365 -12.83062 -12.60468 -12.36986 -12.31683 -12.05135 -11.87731 -11.75016 -11.70812 -11.56653 -11.36039 -11.33193 -11.22553 -11.16774 -10.97404 -10.54079 -10.44515 -10.35628 -10.30032 -10.01824 -9.91633 -9.78336 -9.50999 -9.29303 -8.88871 -8.05256 -7.47782 -6.50627 -3.92066 2.69023 3.09617 3.10910 3.20977 3.26338 3.59263 3.76948 4.10321 4.23072 4.60054 4.66121 4.78649 4.86457 4.95320 4.98228 5.02442 5.04675 5.09782 5.12592 5.13716 5.19698 5.22999 5.28340 5.32811 5.38977 5.59987 5.73343 5.77020 5.78829 5.85244 5.90113 5.99878 6.01727 6.04649 6.05799 6.16721 6.17332 6.25016 6.34646 6.39244 6.45857 6.67033 6.80815 6.81611 7.29582 7.42827 7.46256 7.66968 7.95783 8.32555 8.50061 9.07865 9.43702 9.93910 10.65747 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022931 B = 0.001949 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.740587 B =14361.890491 C =14556.477372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.061 3.939 4 C -0.103 4.103 5 C -0.138 4.138 6 C 0.509 3.491 7 O -0.548 6.548 8 N -0.710 5.710 9 C 0.154 3.846 10 H 0.086 0.914 11 C -0.130 4.130 12 C -0.103 4.103 13 C 0.060 3.940 14 H 0.087 0.913 15 C -0.144 4.144 16 N -0.510 5.510 17 C 0.036 3.964 18 C 0.406 3.594 19 O -0.594 6.594 20 N -0.555 5.555 21 C -0.303 4.303 22 H 0.103 0.897 23 C 0.025 3.975 24 N -0.898 5.898 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.270 1.270 29 C 0.031 3.969 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.407 0.593 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.393 0.607 50 H 0.273 0.727 51 H 0.070 0.930 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.182 -9.359 -5.449 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.141 4.141 5 C -0.178 4.178 6 C 0.295 3.705 7 O -0.426 6.426 8 N -0.362 5.362 9 C 0.049 3.951 10 H 0.104 0.896 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.047 4.047 14 H 0.104 0.896 15 C -0.202 4.202 16 N -0.233 5.233 17 C -0.096 4.096 18 C 0.192 3.808 19 O -0.481 6.481 20 N -0.190 5.190 21 C -0.433 4.433 22 H 0.120 0.880 23 C -0.177 4.177 24 N -0.538 5.538 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.097 4.097 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.243 0.757 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.113 0.887 48 H 0.104 0.896 49 H 0.226 0.774 50 H 0.083 0.917 51 H 0.088 0.912 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.708 -10.718 -5.669 23.139 hybrid contribution 1.083 1.390 0.448 1.819 sum -18.625 -9.328 -5.221 21.475 Atomic orbital electron populations 1.22742 0.81047 1.02783 0.99945 1.87893 1.19664 1.28101 1.95408 1.22571 0.94229 0.84640 1.00154 1.21205 0.91932 0.96035 1.04944 1.21537 0.92640 0.99106 1.04524 1.20546 0.89294 0.84532 0.76091 1.90702 1.75119 1.26753 1.49977 1.46059 1.06987 1.08992 1.74176 1.21005 0.79172 0.98239 0.96665 0.89600 1.21921 1.01452 0.98046 0.95409 1.21537 1.00568 0.93880 0.98110 1.21907 1.00921 0.94321 0.87599 0.89555 1.21888 1.00999 0.97845 0.99454 1.62401 1.57452 1.01250 1.02234 1.22134 0.92756 0.93952 1.00719 1.21057 0.90052 0.84989 0.84703 1.90403 1.68009 1.36801 1.52905 1.42055 1.07757 1.21257 1.47962 1.19711 0.81967 1.08077 1.33533 0.87960 1.25281 1.00680 0.95284 0.96491 1.69601 1.36627 1.10944 1.36648 0.85868 0.82184 0.78636 0.77682 1.20357 1.20850 1.19426 1.22576 1.02001 0.88978 0.96124 0.94067 0.94091 0.89637 0.93236 0.93257 0.90355 0.90316 0.88813 0.88850 0.75734 0.90992 0.91904 0.92150 0.92056 0.92751 0.92334 0.92802 0.88701 0.89565 0.77417 0.91743 0.91165 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.83 10.70 -35.23 -0.38 -4.20 16 3 C 0.06 0.47 5.94 37.16 0.22 0.69 16 4 C -0.10 -0.96 4.87 -26.73 -0.13 -1.09 16 5 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 6 C 0.51 6.05 7.79 -10.98 -0.09 5.97 16 7 O -0.55 -8.73 15.65 5.56 0.09 -8.64 16 8 N -0.71 -8.04 4.41 -53.72 -0.24 -8.27 16 9 C 0.15 2.09 2.81 -67.85 -0.19 1.90 16 10 H 0.09 1.28 7.59 -51.93 -0.39 0.89 16 11 C -0.13 -1.77 5.67 -26.61 -0.15 -1.92 16 12 C -0.10 -1.32 5.21 -26.65 -0.14 -1.46 16 13 C 0.06 0.90 2.05 -67.73 -0.14 0.76 16 14 H 0.09 1.64 5.65 -51.93 -0.29 1.35 16 15 C -0.14 -1.93 8.92 37.16 0.33 -1.59 16 16 N -0.51 -7.34 4.17 -228.13 -0.95 -8.29 16 17 C 0.04 0.58 5.43 -4.97 -0.03 0.55 16 18 C 0.41 8.72 7.18 -10.99 -0.08 8.64 16 19 O -0.59 -14.34 11.22 5.55 0.06 -14.28 16 20 N -0.56 -13.28 5.29 -10.96 -0.06 -13.34 16 21 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 22 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 23 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 24 N -0.90 -23.67 13.05 55.50 0.72 -22.95 16 25 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 C 0.03 0.48 4.60 -3.84 -0.02 0.46 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.41 4.01 8.17 -40.82 -0.33 3.67 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.73 7.73 -51.93 -0.40 0.33 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.85 5.98 -51.93 -0.31 0.54 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.10 1.40 5.88 -51.93 -0.31 1.09 16 48 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 50 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 51 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 52 H 0.09 1.67 5.72 -51.93 -0.30 1.38 16 LS Contribution 407.95 15.07 6.15 6.15 Total: -1.00 -31.00 407.95 -8.24 -39.24 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -8.93 Total: 13.81 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 0.31 Total: 5.24 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.52 Total: -52.85 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.23 Total: -27.13 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.00 -8.24 -39.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131851959.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.207 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds