Wall clock time and date at job start Wed Apr 1 2020 00:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99752 * 2 1 4 4 C 1.52997 * 109.47429 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47478 * 179.97438 * 4 3 2 6 6 C 1.50707 * 109.47322 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99828 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00010 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99870 * 180.27669 * 8 6 5 10 10 H 1.09003 * 109.50036 * 324.63764 * 9 8 6 11 11 C 1.53116 * 109.50510 * 84.71888 * 9 8 6 12 12 C 1.53123 * 109.15658 * 62.28948 * 11 9 8 13 13 C 1.53033 * 109.28117 * 57.65482 * 12 11 9 14 14 H 1.09001 * 109.46192 * 60.83401 * 13 12 11 15 15 C 1.53000 * 109.46478 * 180.80384 * 13 12 11 16 16 N 1.46844 * 109.52099 * 300.81896 * 13 12 11 17 17 C 1.46907 * 110.99812 * 185.84059 * 16 13 12 18 18 C 1.50696 * 109.47139 * 295.98647 * 17 16 13 19 19 O 1.21292 * 119.99797 * 5.41372 * 18 17 16 20 20 N 1.34773 * 120.00066 * 185.41048 * 18 17 16 21 21 C 1.37099 * 119.99753 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00450 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99749 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00284 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47489 * 89.99908 * 25 23 21 27 27 H 1.48495 * 109.47388 * 210.00094 * 25 23 21 28 28 H 1.48500 * 109.47359 * 330.00066 * 25 23 21 29 29 C 1.46840 * 111.20045 * 61.74168 * 16 13 12 30 30 H 1.09001 * 109.47861 * 299.99919 * 1 2 3 31 31 H 1.09003 * 109.47481 * 60.00294 * 1 2 3 32 32 H 1.09005 * 109.46920 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47548 * 59.99698 * 3 2 1 34 34 H 1.08998 * 109.47468 * 299.99625 * 3 2 1 35 35 H 1.08999 * 109.47288 * 59.99644 * 4 3 2 36 36 H 1.08997 * 109.47295 * 300.00180 * 4 3 2 37 37 H 1.09001 * 109.47233 * 60.00548 * 5 4 3 38 38 H 1.08998 * 109.47515 * 300.00098 * 5 4 3 39 39 H 0.97000 * 120.00301 * 359.97438 * 8 6 5 40 40 H 1.08993 * 109.51999 * 182.19029 * 11 9 8 41 41 H 1.08996 * 109.52452 * 302.31922 * 11 9 8 42 42 H 1.09004 * 109.49894 * 177.59901 * 12 11 9 43 43 H 1.09000 * 109.50520 * 297.71069 * 12 11 9 44 44 H 1.09005 * 109.46827 * 55.68080 * 15 13 12 45 45 H 1.08991 * 109.47375 * 175.68366 * 15 13 12 46 46 H 1.09003 * 109.46766 * 295.68969 * 15 13 12 47 47 H 1.08993 * 109.47197 * 55.98950 * 17 16 13 48 48 H 1.09004 * 109.46978 * 175.98954 * 17 16 13 49 49 H 0.96995 * 120.00101 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00612 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.46353 * 178.23984 * 29 16 13 52 52 H 1.09005 * 109.46311 * 58.27106 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6599 2.4636 0.0000 7 8 6.1815 1.3687 0.0009 8 7 6.4238 3.5740 0.0000 9 6 7.8842 3.4584 -0.0061 10 1 8.1832 2.5927 0.5850 11 6 8.3777 3.2895 -1.4457 12 6 8.0052 4.5356 -2.2540 13 6 8.6170 5.7707 -1.5890 14 1 9.7025 5.6733 -1.5710 15 6 8.2307 7.0208 -2.3822 16 7 8.1134 5.8883 -0.2147 17 6 8.5707 7.1375 0.4086 18 6 10.0725 7.1168 0.5320 19 8 10.7079 6.2020 0.0519 20 7 10.7095 8.1148 1.1758 21 6 12.0758 8.0962 1.2876 22 1 12.6416 7.2816 0.8602 23 6 12.7326 9.1250 1.9519 24 7 12.0442 10.1159 2.4724 25 14 14.5942 9.1001 2.1036 26 1 15.1951 9.8015 0.9409 27 1 14.9978 9.7852 3.3577 28 1 15.0697 7.6936 2.1330 29 6 8.4995 4.7248 0.5937 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6884 1.8465 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6437 -0.8891 36 1 3.8567 0.6441 0.8908 37 1 3.8357 3.1240 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0066 4.4497 -0.0004 40 1 9.4604 3.1646 -1.4473 41 1 7.9090 2.4119 -1.8909 42 1 8.3912 4.4398 -3.2689 43 1 6.9206 4.6386 -2.2848 44 1 7.1453 7.0767 -2.4662 45 1 8.6014 7.9069 -1.8671 46 1 8.6700 6.9691 -3.3784 47 1 8.2685 7.9834 -0.2088 48 1 8.1261 7.2333 1.3991 49 1 10.2014 8.8463 1.5600 50 1 12.5025 10.8338 2.9364 51 1 8.1389 4.8556 1.6140 52 1 9.5855 4.6322 0.6015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131851959.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:41 Heat of formation + Delta-G solvation = -149.626800 kcal Electronic energy + Delta-G solvation = -30650.792433 eV Core-core repulsion = 26455.915959 eV Total energy + Delta-G solvation = -4194.876475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55646 -40.52009 -39.04335 -38.70156 -36.18474 -35.52993 -34.57524 -33.74185 -33.24240 -32.24452 -29.08290 -28.83155 -27.56147 -26.51743 -26.24662 -24.06883 -23.23166 -22.32320 -21.38620 -21.01299 -20.33265 -19.65619 -18.33508 -17.72669 -17.29294 -17.20346 -16.94889 -16.77763 -16.41272 -16.21210 -16.15780 -15.76025 -15.64399 -15.54981 -15.13521 -14.93517 -14.53802 -14.39769 -14.11134 -13.78557 -13.52222 -13.31422 -13.05181 -12.98694 -12.91124 -12.85697 -12.82694 -12.59176 -12.51695 -12.43976 -12.22625 -12.15981 -11.93269 -11.83310 -11.74668 -11.59943 -11.32557 -11.08961 -10.93688 -10.79268 -10.57091 -9.98412 -9.95495 -8.99820 -8.46492 -5.95808 1.34584 1.39532 1.50970 1.76370 2.03563 2.24426 2.27846 2.90706 3.01626 3.19959 3.28502 3.76231 3.84961 3.88561 4.03941 4.05037 4.10212 4.22116 4.36029 4.43098 4.47064 4.51363 4.53031 4.56501 4.57650 4.60522 4.63185 4.65618 4.72713 4.77677 4.81184 4.88995 4.93196 4.95269 5.01992 5.06703 5.15273 5.17346 5.22114 5.29982 5.30556 5.39384 5.52432 5.65656 5.91855 6.06584 6.15338 6.29746 6.59335 6.75574 7.12411 7.41536 7.56730 8.12006 8.68592 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022931 B = 0.001949 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.740587 B =14361.890491 C =14556.477372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.062 3.938 4 C -0.101 4.101 5 C -0.125 4.125 6 C 0.506 3.494 7 O -0.594 6.594 8 N -0.698 5.698 9 C 0.163 3.837 10 H 0.068 0.932 11 C -0.126 4.126 12 C -0.093 4.093 13 C 0.060 3.940 14 H 0.040 0.960 15 C -0.139 4.139 16 N -0.485 5.485 17 C 0.045 3.955 18 C 0.409 3.591 19 O -0.622 6.622 20 N -0.570 5.570 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.917 5.917 25 Si 0.987 3.013 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.276 1.276 29 C 0.039 3.961 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.419 0.581 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.044 0.956 46 H 0.059 0.941 47 H 0.118 0.882 48 H 0.110 0.890 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.079 0.921 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.974 -8.148 -5.902 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.014 4.014 4 C -0.139 4.139 5 C -0.165 4.165 6 C 0.295 3.705 7 O -0.475 6.475 8 N -0.351 5.351 9 C 0.057 3.943 10 H 0.086 0.914 11 C -0.165 4.165 12 C -0.130 4.130 13 C -0.049 4.049 14 H 0.058 0.942 15 C -0.197 4.197 16 N -0.208 5.208 17 C -0.087 4.087 18 C 0.196 3.804 19 O -0.510 6.510 20 N -0.207 5.207 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.210 4.210 24 N -0.558 5.558 25 Si 0.812 3.188 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.201 1.201 29 C -0.090 4.090 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.257 0.743 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.078 0.922 47 H 0.136 0.864 48 H 0.128 0.872 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.097 0.903 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -22.540 -9.481 -6.128 25.209 hybrid contribution 1.917 0.900 0.547 2.187 sum -20.624 -8.580 -5.581 23.024 Atomic orbital electron populations 1.22914 0.79408 1.03640 1.01062 1.87847 1.21606 1.29458 1.95676 1.22612 0.92700 0.84293 1.01824 1.21142 0.93546 0.96488 1.02731 1.21531 0.88925 0.98772 1.07269 1.21292 0.90986 0.83598 0.74672 1.90694 1.76269 1.28548 1.51995 1.45893 1.05642 1.09698 1.73823 1.20683 0.80831 0.96604 0.96160 0.91410 1.21861 1.00191 0.98718 0.95733 1.21474 1.01637 0.91969 0.97962 1.21877 0.98387 0.96421 0.88177 0.94180 1.21851 1.02756 0.95929 0.99140 1.62503 1.55925 1.00434 1.01948 1.22256 0.88264 0.95422 1.02750 1.22193 0.92434 0.83376 0.82373 1.90428 1.69617 1.37640 1.53279 1.42121 1.06951 1.22283 1.49354 1.19607 0.83564 1.08107 1.34914 0.90629 1.25952 1.04448 0.94735 0.95890 1.69653 1.37933 1.11239 1.36942 0.85009 0.77514 0.78186 0.78127 1.19738 1.19597 1.20134 1.22423 0.99574 0.89983 0.97002 0.92949 0.92887 0.89095 0.91540 0.91408 0.92564 0.92697 0.85999 0.85818 0.74299 0.93054 0.91981 0.91305 0.89854 0.89980 0.93698 0.92226 0.86405 0.87172 0.77030 0.91339 0.90271 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.78 10.70 -148.98 -1.59 -9.38 16 3 C 0.06 0.81 5.94 71.98 0.43 1.24 16 4 C -0.10 -1.75 4.87 30.59 0.15 -1.60 16 5 C -0.13 -1.60 5.70 29.85 0.17 -1.43 16 6 C 0.51 11.21 7.79 87.66 0.68 11.89 16 7 O -0.59 -19.04 15.65 -3.03 -0.05 -19.09 16 8 N -0.70 -14.34 4.41 -442.28 -1.95 -16.29 16 9 C 0.16 4.41 2.81 45.04 0.13 4.53 16 10 H 0.07 2.10 7.59 -2.39 -0.02 2.08 16 11 C -0.13 -3.46 5.67 30.67 0.17 -3.28 16 12 C -0.09 -2.22 5.21 30.65 0.16 -2.06 16 13 C 0.06 1.71 2.05 44.94 0.09 1.80 16 14 H 0.04 1.57 5.65 -2.39 -0.01 1.55 16 15 C -0.14 -3.37 8.92 71.98 0.64 -2.73 16 16 N -0.49 -13.20 4.17 -875.67 -3.65 -16.85 16 17 C 0.04 1.35 5.43 85.55 0.46 1.82 16 18 C 0.41 17.80 7.18 87.66 0.63 18.43 16 19 O -0.62 -31.30 11.22 -3.07 -0.03 -31.33 16 20 N -0.57 -27.79 5.29 -306.99 -1.62 -29.42 16 21 C -0.33 -18.32 9.68 84.04 0.81 -17.51 16 22 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 23 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 24 N -0.92 -48.34 13.05 21.66 0.28 -48.06 16 25 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 29 C 0.04 1.17 4.60 86.33 0.40 1.57 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 36 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 37 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.42 6.70 8.17 -92.71 -0.76 5.94 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.67 7.73 -2.39 -0.02 1.65 16 44 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 45 H 0.04 1.21 5.98 -2.39 -0.01 1.19 16 46 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.12 3.15 5.88 -2.39 -0.01 3.14 16 48 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 49 H 0.40 18.38 7.90 -92.71 -0.73 17.65 16 50 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 51 H 0.08 2.23 8.12 -2.39 -0.02 2.21 16 52 H 0.05 1.87 5.72 -2.38 -0.01 1.85 16 Total: -1.00 -71.32 407.95 -0.51 -71.83 By element: Atomic # 1 Polarization: 40.48 SS G_CDS: -0.56 Total: 39.92 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 6.64 Total: 14.13 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -6.94 Total: -110.61 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -1.68 Total: -59.80 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.32 -0.51 -71.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131851959.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.800 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds