Wall clock time and date at job start Wed Apr 1 2020 00:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99700 * 2 1 4 4 C 1.52996 * 109.47164 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47453 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47208 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00222 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99787 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99854 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.53517 * 35.10182 * 9 8 6 11 11 C 1.53112 * 109.50418 * 275.00377 * 9 8 6 12 12 C 1.53121 * 109.15978 * 297.71104 * 11 9 8 13 13 C 1.53041 * 109.27762 * 302.34780 * 12 11 9 14 14 H 1.08995 * 109.46212 * 299.16796 * 13 12 11 15 15 C 1.52999 * 109.45812 * 179.19723 * 13 12 11 16 16 N 1.46844 * 109.52039 * 59.17818 * 13 12 11 17 17 C 1.46903 * 110.99584 * 174.15602 * 16 13 12 18 18 C 1.50707 * 109.46954 * 65.47246 * 17 16 13 19 19 O 1.21294 * 119.99647 * 354.36589 * 18 17 16 20 20 N 1.34774 * 119.99794 * 174.36407 * 18 17 16 21 21 C 1.37099 * 119.99401 * 179.97438 * 20 18 17 22 22 H 1.07996 * 120.00339 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99646 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99960 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00036 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47103 * 89.99787 * 25 23 21 27 27 H 1.48501 * 109.47021 * 209.99878 * 25 23 21 28 28 H 1.48494 * 109.47066 * 329.99784 * 25 23 21 29 29 C 1.46845 * 111.20072 * 298.25480 * 16 13 12 30 30 H 1.09003 * 109.47346 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47267 * 299.99763 * 1 2 3 32 32 H 1.08996 * 109.47383 * 59.99511 * 1 2 3 33 33 H 1.09006 * 109.46965 * 60.00275 * 3 2 1 34 34 H 1.08999 * 109.47367 * 300.00232 * 3 2 1 35 35 H 1.09007 * 109.46668 * 59.99808 * 4 3 2 36 36 H 1.08999 * 109.47216 * 300.00383 * 4 3 2 37 37 H 1.08998 * 109.46965 * 59.99871 * 5 4 3 38 38 H 1.08999 * 109.47122 * 300.00318 * 5 4 3 39 39 H 0.96999 * 119.99919 * 359.97438 * 8 6 5 40 40 H 1.09000 * 109.52922 * 57.61973 * 11 9 8 41 41 H 1.09003 * 109.52349 * 177.74557 * 11 9 8 42 42 H 1.08995 * 109.50203 * 62.29422 * 12 11 9 43 43 H 1.08997 * 109.50414 * 182.36673 * 12 11 9 44 44 H 1.08996 * 109.47640 * 53.60719 * 15 13 12 45 45 H 1.08998 * 109.47082 * 173.60975 * 15 13 12 46 46 H 1.09007 * 109.47257 * 293.60614 * 15 13 12 47 47 H 1.09002 * 109.47228 * 185.46822 * 17 16 13 48 48 H 1.09003 * 109.47370 * 305.47459 * 17 16 13 49 49 H 0.96996 * 120.00467 * 0.02562 * 20 18 17 50 50 H 0.97004 * 119.99701 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.46128 * 301.72909 * 29 16 13 52 52 H 1.09001 * 109.45813 * 181.75952 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6600 2.4635 0.0013 7 8 6.1816 1.3686 0.0013 8 7 6.4239 3.5740 0.0013 9 6 7.8843 3.4583 0.0019 10 1 8.1815 2.5916 -0.5885 11 6 8.3834 3.2929 1.4398 12 6 8.0143 4.5408 2.2467 13 6 8.6234 5.7744 1.5763 14 1 9.7088 5.6768 1.5541 15 6 8.2403 7.0262 2.3682 16 7 8.1143 5.8886 0.2037 17 6 8.5691 7.1364 -0.4242 18 6 10.0670 7.1002 -0.5862 19 8 10.7049 6.1779 -0.1240 20 7 10.6977 8.0927 -1.2447 21 6 12.0604 8.0600 -1.3916 22 1 12.6284 7.2388 -0.9801 23 6 12.7108 9.0836 -2.0700 24 7 12.0196 10.0826 -2.5712 25 14 14.5674 9.0388 -2.2708 26 1 14.9124 8.3237 -3.5258 27 1 15.0923 10.4266 -2.3315 28 1 15.1733 8.3304 -1.1149 29 6 8.4972 4.7232 -0.6034 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6885 1.8464 0.8901 34 1 1.6885 1.8465 -0.8899 35 1 3.8573 0.6437 -0.8892 36 1 3.8567 0.6440 0.8908 37 1 3.8356 3.1232 0.8913 38 1 3.8364 3.1237 -0.8887 39 1 6.0066 4.4497 0.0009 40 1 7.9157 2.4169 1.8894 41 1 9.4661 3.1667 1.4374 42 1 6.9298 4.6438 2.2817 43 1 8.4037 4.4471 3.2604 44 1 8.5184 6.8940 3.4138 45 1 8.7649 7.8896 1.9591 46 1 7.1646 7.1868 2.2959 47 1 8.1004 7.2427 -1.4025 48 1 8.2921 7.9820 0.2053 49 1 10.1876 8.8305 -1.6140 50 1 12.4736 10.7969 -3.0451 51 1 9.5832 4.6307 -0.6154 52 1 8.1325 4.8517 -1.6226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131851960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:45 Heat of formation + Delta-G solvation = -150.941370 kcal Electronic energy + Delta-G solvation = -30649.283680 eV Core-core repulsion = 26454.350202 eV Total energy + Delta-G solvation = -4194.933479 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55183 -40.51643 -39.04477 -38.70214 -36.18075 -35.53702 -34.57529 -33.73568 -33.24644 -32.23982 -29.08949 -28.82590 -27.55572 -26.51632 -26.23942 -24.07395 -23.23189 -22.32413 -21.38565 -21.01574 -20.32979 -19.65857 -18.33550 -17.73017 -17.29212 -17.20220 -16.92913 -16.77881 -16.40716 -16.18802 -16.15689 -15.75978 -15.65142 -15.55151 -15.14871 -14.93281 -14.53880 -14.39343 -14.10887 -13.80080 -13.52117 -13.29548 -13.05912 -12.98759 -12.92140 -12.85472 -12.80818 -12.59386 -12.51704 -12.44139 -12.24622 -12.15825 -11.93283 -11.83335 -11.74453 -11.60099 -11.32393 -11.11602 -10.93557 -10.79337 -10.57113 -9.98492 -9.95558 -9.00576 -8.46680 -5.95964 1.34532 1.39449 1.50926 1.76356 2.03336 2.24573 2.27772 2.90903 3.01777 3.19844 3.28385 3.76278 3.84954 3.88536 4.04214 4.05360 4.10743 4.22095 4.36011 4.42865 4.47104 4.51323 4.53103 4.56487 4.57977 4.61368 4.63156 4.65310 4.71793 4.77473 4.80004 4.89045 4.94422 4.95617 5.03637 5.07145 5.14399 5.17319 5.22354 5.29309 5.30047 5.39352 5.51806 5.65760 5.91653 6.06347 6.15305 6.29694 6.59124 6.75610 7.12203 7.41567 7.56528 8.11749 8.68417 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022429 B = 0.001956 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.109271 B =14312.354382 C =14527.714437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.062 3.938 4 C -0.101 4.101 5 C -0.125 4.125 6 C 0.506 3.494 7 O -0.594 6.594 8 N -0.698 5.698 9 C 0.163 3.837 10 H 0.067 0.933 11 C -0.126 4.126 12 C -0.093 4.093 13 C 0.061 3.939 14 H 0.037 0.963 15 C -0.138 4.138 16 N -0.485 5.485 17 C 0.046 3.954 18 C 0.409 3.591 19 O -0.622 6.622 20 N -0.570 5.570 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.917 5.917 25 Si 0.987 3.013 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.276 1.276 29 C 0.037 3.963 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.419 0.581 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.082 0.918 47 H 0.110 0.890 48 H 0.117 0.883 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.050 0.950 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.935 -8.029 6.264 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.014 4.014 4 C -0.139 4.139 5 C -0.165 4.165 6 C 0.294 3.706 7 O -0.475 6.475 8 N -0.351 5.351 9 C 0.057 3.943 10 H 0.085 0.915 11 C -0.165 4.165 12 C -0.131 4.131 13 C -0.047 4.047 14 H 0.055 0.945 15 C -0.196 4.196 16 N -0.208 5.208 17 C -0.086 4.086 18 C 0.196 3.804 19 O -0.510 6.510 20 N -0.207 5.207 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.210 4.210 24 N -0.558 5.558 25 Si 0.812 3.188 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.201 1.201 29 C -0.092 4.092 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.257 0.743 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.101 0.899 47 H 0.128 0.872 48 H 0.135 0.865 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.500 -9.362 6.488 25.219 hybrid contribution 1.914 0.887 -0.600 2.193 sum -20.586 -8.475 5.888 23.028 Atomic orbital electron populations 1.22914 0.79406 1.03640 1.01062 1.87849 1.21608 1.29458 1.95678 1.22614 0.92697 0.84292 1.01825 1.21144 0.93548 0.96487 1.02729 1.21529 0.88921 0.98773 1.07271 1.21295 0.90988 0.83600 0.74672 1.90695 1.76270 1.28551 1.51998 1.45896 1.05644 1.09692 1.73825 1.20682 0.80815 0.96615 0.96169 0.91460 1.21861 1.00169 0.98735 0.95726 1.21474 1.01716 0.91926 0.97936 1.21850 0.98119 0.96491 0.88250 0.94488 1.21825 1.02662 0.95702 0.99388 1.62529 1.55863 1.00448 1.01944 1.22231 0.88334 0.95351 1.02660 1.22199 0.92415 0.83452 0.82333 1.90428 1.69304 1.37014 1.54235 1.42120 1.07263 1.22153 1.49161 1.19609 0.83907 1.07969 1.34724 0.90627 1.25958 1.04420 0.94700 0.95958 1.69661 1.37987 1.11106 1.37008 0.85007 0.77462 0.77819 0.78537 1.19864 1.19532 1.20056 1.22455 0.99831 0.89948 0.96919 0.89094 0.92883 0.92953 0.91404 0.91538 0.92712 0.92553 0.85793 0.86019 0.74301 0.91984 0.93051 0.89824 0.91238 0.91672 0.94277 0.89898 0.87170 0.86548 0.77027 0.91339 0.93190 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.43 -7.80 10.70 -148.98 -1.59 -9.39 16 3 C 0.06 0.82 5.94 71.98 0.43 1.24 16 4 C -0.10 -1.75 4.87 30.59 0.15 -1.60 16 5 C -0.13 -1.61 5.70 29.85 0.17 -1.44 16 6 C 0.51 11.24 7.80 87.66 0.68 11.92 16 7 O -0.59 -19.09 15.65 -3.03 -0.05 -19.13 16 8 N -0.70 -14.39 4.41 -442.29 -1.95 -16.34 16 9 C 0.16 4.42 2.81 45.04 0.13 4.55 16 10 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 11 C -0.13 -3.45 5.67 30.67 0.17 -3.28 16 12 C -0.09 -2.21 5.21 30.65 0.16 -2.05 16 13 C 0.06 1.75 2.07 44.94 0.09 1.84 16 14 H 0.04 1.44 5.76 -2.39 -0.01 1.43 16 15 C -0.14 -3.31 8.54 71.98 0.62 -2.69 16 16 N -0.48 -13.20 4.17 -875.64 -3.65 -16.85 16 17 C 0.05 1.39 5.47 85.56 0.47 1.86 16 18 C 0.41 17.82 7.18 87.66 0.63 18.45 16 19 O -0.62 -31.35 11.22 -3.07 -0.03 -31.38 16 20 N -0.57 -27.83 5.29 -306.98 -1.62 -29.45 16 21 C -0.33 -18.35 9.68 84.04 0.81 -17.53 16 22 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 23 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 24 N -0.92 -48.37 13.05 21.66 0.28 -48.08 16 25 Si 0.99 42.52 29.55 68.60 2.03 44.55 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 29 C 0.04 1.12 4.57 86.33 0.39 1.52 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 1.19 8.10 -2.38 -0.02 1.17 16 36 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 37 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.42 6.72 8.17 -92.71 -0.76 5.96 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.67 7.73 -2.39 -0.02 1.65 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 1.07 6.60 -2.39 -0.02 1.05 16 46 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 48 H 0.12 3.12 6.04 -2.39 -0.01 3.11 16 49 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 50 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 51 H 0.05 1.99 5.61 -2.39 -0.01 1.97 16 52 H 0.08 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -71.42 408.39 -0.54 -71.96 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.56 Total: 39.87 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 6.62 Total: 14.25 kcal Atomic # 7 Polarization: -103.78 SS G_CDS: -6.94 Total: -110.72 kcal Atomic # 8 Polarization: -58.23 SS G_CDS: -1.68 Total: -59.91 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.42 -0.54 -71.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131851960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.983 kcal (2) G-P(sol) polarization free energy of solvation -71.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds