Wall clock time and date at job start Wed Apr 1 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00280 * 2 1 4 4 C 1.53004 * 109.47480 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47230 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46908 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00291 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99956 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00131 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.50158 * 324.92893 * 9 8 6 11 11 C 1.53121 * 109.50176 * 85.00418 * 9 8 6 12 12 C 1.53113 * 109.15972 * 177.59429 * 11 9 8 13 13 C 1.53035 * 109.28360 * 302.34652 * 12 11 9 14 14 H 1.08999 * 109.45987 * 299.16625 * 13 12 11 15 15 C 1.52999 * 109.45681 * 179.18789 * 13 12 11 16 16 N 1.46851 * 109.52003 * 59.17939 * 13 12 11 17 17 C 1.46906 * 110.99872 * 174.16455 * 16 13 12 18 18 C 1.50699 * 109.47119 * 64.62072 * 17 16 13 19 19 O 1.21297 * 120.00132 * 354.32928 * 18 17 16 20 20 N 1.34773 * 119.99829 * 174.06027 * 18 17 16 21 21 C 1.37097 * 120.00030 * 180.27132 * 20 18 17 22 22 H 1.07995 * 120.00253 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99988 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99866 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00093 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46785 * 90.00586 * 25 23 21 27 27 H 1.48495 * 109.47284 * 210.00256 * 25 23 21 28 28 H 1.48502 * 109.47125 * 330.00893 * 25 23 21 29 29 C 1.46849 * 111.19647 * 298.25697 * 16 13 12 30 30 H 1.08993 * 109.47239 * 300.00959 * 1 2 3 31 31 H 1.09010 * 109.46800 * 60.00221 * 1 2 3 32 32 H 1.08994 * 109.47239 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47560 * 59.99328 * 3 2 1 34 34 H 1.09010 * 109.46617 * 299.99448 * 3 2 1 35 35 H 1.09006 * 109.46748 * 59.99485 * 4 3 2 36 36 H 1.08999 * 109.46737 * 299.99840 * 4 3 2 37 37 H 1.09008 * 109.46633 * 60.00273 * 5 4 3 38 38 H 1.08999 * 109.47668 * 299.99929 * 5 4 3 39 39 H 0.97003 * 120.00009 * 0.02562 * 8 6 5 40 40 H 1.09004 * 109.52036 * 57.69595 * 11 9 8 41 41 H 1.08996 * 109.57798 * 297.53134 * 11 9 8 42 42 H 1.09002 * 109.50409 * 182.40593 * 12 11 9 43 43 H 1.09007 * 109.53617 * 62.30974 * 12 11 9 44 44 H 1.08992 * 109.47379 * 293.10949 * 15 13 12 45 45 H 1.09003 * 109.46671 * 53.10867 * 15 13 12 46 46 H 1.09001 * 109.47242 * 173.10448 * 15 13 12 47 47 H 1.08993 * 109.46913 * 304.61857 * 17 16 13 48 48 H 1.09000 * 109.46995 * 184.61821 * 17 16 13 49 49 H 0.97006 * 120.00307 * 0.27463 * 20 18 17 50 50 H 0.97008 * 119.99944 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.45720 * 181.75718 * 29 16 13 52 52 H 1.08994 * 109.46597 * 301.72570 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4632 0.0013 7 8 6.1817 1.3683 0.0021 8 7 6.4241 3.5736 0.0004 9 6 7.8845 3.4579 0.0011 10 1 8.1806 2.5914 0.5925 11 6 8.3847 3.2908 -1.4364 12 6 9.9147 3.2310 -1.4324 13 6 10.4684 4.5031 -0.7866 14 1 10.1508 5.3713 -1.3640 15 6 11.9969 4.4385 -0.7622 16 7 9.9615 4.6168 0.5869 17 6 10.5808 5.7519 1.2843 18 6 10.1731 7.0375 0.6121 19 8 9.5242 7.0070 -0.4123 20 7 10.5249 8.2212 1.1520 21 6 10.1493 9.3909 0.5434 22 1 9.5719 9.3638 -0.3688 23 6 10.5124 10.6113 1.0998 24 7 10.1519 11.7324 0.5168 25 14 11.5118 10.6582 2.6773 26 1 12.9594 10.6603 2.3462 27 1 11.1766 11.8879 3.4393 28 1 11.1940 9.4637 3.5003 29 6 8.4971 4.7235 0.6053 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8575 0.6434 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 3.8358 3.1237 0.8896 38 1 3.8366 3.1227 -0.8904 39 1 6.0070 4.4493 -0.0006 40 1 8.0549 4.1381 -2.0376 41 1 7.9852 2.3680 -1.8572 42 1 10.2786 3.1550 -2.4570 43 1 10.2440 2.3612 -0.8638 44 1 12.3162 3.6448 -0.0869 45 1 12.3678 4.2324 -1.7663 46 1 12.3954 5.3922 -0.4163 47 1 11.6656 5.6517 1.2494 48 1 10.2503 5.7643 2.3229 49 1 11.0439 8.2456 1.9711 50 1 10.4051 12.5844 0.9054 51 1 8.1542 4.8376 1.6337 52 1 8.1887 5.5907 0.0215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131851961.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:49 Heat of formation + Delta-G solvation = -121.079498 kcal Electronic energy + Delta-G solvation = -30433.599952 eV Core-core repulsion = 26239.961382 eV Total energy + Delta-G solvation = -4193.638571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.30099 -39.42988 -38.24380 -37.51716 -35.00497 -34.03933 -33.86290 -32.60466 -31.77399 -31.18767 -28.30868 -27.75811 -26.52412 -25.55070 -24.47125 -22.79482 -22.38587 -21.14419 -20.34159 -19.81375 -19.38146 -18.16986 -17.40582 -16.66574 -16.54797 -16.29441 -15.92752 -15.51921 -15.33621 -15.06536 -15.04327 -14.72308 -14.42789 -13.95894 -13.82175 -13.77167 -13.51538 -13.10631 -13.03362 -12.61101 -12.47469 -12.32345 -12.23781 -12.19359 -12.00421 -11.76353 -11.62144 -11.44340 -11.35098 -11.24209 -11.19608 -10.74054 -10.68618 -10.62628 -10.49348 -10.16730 -10.09407 -10.02349 -9.80174 -9.57988 -9.36996 -9.00318 -8.27064 -7.54765 -6.41821 -3.93138 2.59880 2.95635 2.96604 3.00262 3.09046 3.51147 3.58731 4.01378 4.24331 4.51738 4.59625 4.64126 4.77011 4.90530 4.94711 4.97660 5.03437 5.08690 5.10667 5.10960 5.14309 5.19240 5.27123 5.27855 5.35526 5.63002 5.64824 5.70755 5.73632 5.76317 5.82577 5.83444 5.91910 5.98711 5.99068 6.07472 6.13584 6.26388 6.33718 6.34783 6.40903 6.52903 6.74460 6.80526 7.23643 7.37807 7.45982 7.50292 8.04220 8.20115 8.47174 8.83740 9.31709 9.69741 10.70827 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.002165 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.745712 B =12931.675022 C =14350.023416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.103 4.103 5 C -0.139 4.139 6 C 0.515 3.485 7 O -0.541 6.541 8 N -0.724 5.724 9 C 0.152 3.848 10 H 0.090 0.910 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.060 3.940 14 H 0.086 0.914 15 C -0.145 4.145 16 N -0.504 5.504 17 C 0.035 3.965 18 C 0.416 3.584 19 O -0.577 6.577 20 N -0.583 5.583 21 C -0.308 4.308 22 H 0.119 0.881 23 C 0.043 3.957 24 N -0.878 5.878 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.268 1.268 29 C 0.033 3.967 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.401 0.599 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.371 0.629 50 H 0.274 0.726 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 -17.529 1.288 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.016 4.016 4 C -0.141 4.141 5 C -0.179 4.179 6 C 0.301 3.699 7 O -0.418 6.418 8 N -0.375 5.375 9 C 0.048 3.952 10 H 0.108 0.892 11 C -0.166 4.166 12 C -0.142 4.142 13 C -0.048 4.048 14 H 0.104 0.896 15 C -0.202 4.202 16 N -0.227 5.227 17 C -0.097 4.097 18 C 0.202 3.798 19 O -0.462 6.462 20 N -0.221 5.221 21 C -0.437 4.437 22 H 0.136 0.864 23 C -0.161 4.161 24 N -0.517 5.517 25 Si 0.706 3.294 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.194 1.194 29 C -0.096 4.096 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.235 0.765 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.204 0.796 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.030 -18.696 0.857 21.234 hybrid contribution 0.134 1.909 0.895 2.113 sum -9.896 -16.787 1.752 19.565 Atomic orbital electron populations 1.22744 0.81005 1.02795 0.99978 1.87889 1.19698 1.28062 1.95417 1.22570 0.94153 0.84681 1.00226 1.21208 0.92027 0.95891 1.04994 1.21559 0.92320 0.99332 1.04735 1.20519 0.89290 0.84301 0.75801 1.90710 1.75103 1.26568 1.49391 1.46072 1.07250 1.09016 1.75154 1.20906 0.78123 0.99399 0.96818 0.89175 1.21919 0.96248 1.01884 0.96537 1.21531 0.94426 0.98064 1.00207 1.21937 0.94507 0.98752 0.89636 0.89643 1.21869 0.95069 1.01760 1.01534 1.62356 1.05046 1.38590 1.16735 1.22172 1.01113 0.87916 0.98478 1.21040 0.85743 0.85318 0.87724 1.90436 1.43464 1.86530 1.25760 1.42416 1.49029 1.06387 1.24249 1.19434 1.33029 0.81322 1.09911 0.86360 1.25079 0.97715 0.95064 0.98226 1.69625 1.44969 0.97515 1.39582 0.86674 0.81007 0.78544 0.83214 1.19527 1.20109 1.19383 1.22450 0.88547 0.97375 1.01181 0.94057 0.94065 0.89616 0.93202 0.93200 0.90284 0.90264 0.88654 0.88643 0.76485 0.91758 0.91883 0.91620 0.91567 0.92314 0.92507 0.92653 0.88508 0.89401 0.79593 0.91512 0.91339 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.85 10.70 -35.23 -0.38 -4.22 16 3 C 0.06 0.48 5.94 37.16 0.22 0.70 16 4 C -0.10 -0.96 4.87 -26.73 -0.13 -1.09 16 5 C -0.14 -1.12 5.70 -27.89 -0.16 -1.28 16 6 C 0.51 6.13 7.80 -10.98 -0.09 6.04 16 7 O -0.54 -8.54 15.65 5.56 0.09 -8.45 16 8 N -0.72 -8.32 5.08 -53.73 -0.27 -8.60 16 9 C 0.15 2.07 2.62 -67.85 -0.18 1.89 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 11 C -0.13 -1.74 5.58 -26.61 -0.15 -1.89 16 12 C -0.10 -1.39 5.37 -26.65 -0.14 -1.53 16 13 C 0.06 0.91 2.05 -67.72 -0.14 0.77 16 14 H 0.09 1.62 5.69 -51.93 -0.30 1.32 16 15 C -0.14 -1.96 8.52 37.16 0.32 -1.64 16 16 N -0.50 -7.69 4.69 -228.12 -1.07 -8.76 16 17 C 0.04 0.56 5.45 -4.97 -0.03 0.53 16 18 C 0.42 8.65 7.18 -10.99 -0.08 8.57 16 19 O -0.58 -13.70 11.22 5.54 0.06 -13.64 16 20 N -0.58 -13.10 5.09 -10.96 -0.06 -13.16 16 21 C -0.31 -8.32 10.16 -14.93 -0.15 -8.47 16 22 H 0.12 3.67 7.39 -52.49 -0.39 3.28 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -24.86 13.96 55.50 0.77 -24.08 16 25 Si 0.88 18.74 27.74 -169.99 -4.71 14.02 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 29 C 0.03 0.49 4.47 -3.83 -0.02 0.48 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.40 3.86 8.60 -40.82 -0.35 3.51 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.80 6.65 -51.93 -0.35 0.45 16 47 H 0.10 1.38 6.10 -51.93 -0.32 1.06 16 48 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.37 7.40 5.76 -40.82 -0.24 7.17 16 50 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 51 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 52 H 0.08 1.44 5.68 -51.93 -0.29 1.15 16 LS Contribution 407.13 15.07 6.14 6.14 Total: -1.00 -32.70 407.13 -8.11 -40.80 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -8.97 Total: 14.51 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 0.30 Total: 5.43 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.63 Total: -54.60 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.23 Total: -26.31 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.02 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.70 -8.11 -40.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131851961.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.275 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds