Wall clock time and date at job start Wed Apr 1 2020 00:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00280 * 2 1 4 4 C 1.53004 * 109.47480 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47230 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46908 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00291 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99956 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00131 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.50158 * 324.92893 * 9 8 6 11 11 C 1.53121 * 109.50176 * 85.00418 * 9 8 6 12 12 C 1.53113 * 109.15972 * 177.59429 * 11 9 8 13 13 C 1.53035 * 109.28360 * 302.34652 * 12 11 9 14 14 H 1.08999 * 109.45987 * 299.16625 * 13 12 11 15 15 C 1.52999 * 109.45681 * 179.18789 * 13 12 11 16 16 N 1.46851 * 109.52003 * 59.17939 * 13 12 11 17 17 C 1.46906 * 110.99872 * 174.16455 * 16 13 12 18 18 C 1.50699 * 109.47119 * 64.62072 * 17 16 13 19 19 O 1.21297 * 120.00132 * 354.32928 * 18 17 16 20 20 N 1.34773 * 119.99829 * 174.06027 * 18 17 16 21 21 C 1.37097 * 120.00030 * 180.27132 * 20 18 17 22 22 H 1.07995 * 120.00253 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99988 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99866 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00093 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46785 * 90.00586 * 25 23 21 27 27 H 1.48495 * 109.47284 * 210.00256 * 25 23 21 28 28 H 1.48502 * 109.47125 * 330.00893 * 25 23 21 29 29 C 1.46849 * 111.19647 * 298.25697 * 16 13 12 30 30 H 1.08993 * 109.47239 * 300.00959 * 1 2 3 31 31 H 1.09010 * 109.46800 * 60.00221 * 1 2 3 32 32 H 1.08994 * 109.47239 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47560 * 59.99328 * 3 2 1 34 34 H 1.09010 * 109.46617 * 299.99448 * 3 2 1 35 35 H 1.09006 * 109.46748 * 59.99485 * 4 3 2 36 36 H 1.08999 * 109.46737 * 299.99840 * 4 3 2 37 37 H 1.09008 * 109.46633 * 60.00273 * 5 4 3 38 38 H 1.08999 * 109.47668 * 299.99929 * 5 4 3 39 39 H 0.97003 * 120.00009 * 0.02562 * 8 6 5 40 40 H 1.09004 * 109.52036 * 57.69595 * 11 9 8 41 41 H 1.08996 * 109.57798 * 297.53134 * 11 9 8 42 42 H 1.09002 * 109.50409 * 182.40593 * 12 11 9 43 43 H 1.09007 * 109.53617 * 62.30974 * 12 11 9 44 44 H 1.08992 * 109.47379 * 293.10949 * 15 13 12 45 45 H 1.09003 * 109.46671 * 53.10867 * 15 13 12 46 46 H 1.09001 * 109.47242 * 173.10448 * 15 13 12 47 47 H 1.08993 * 109.46913 * 304.61857 * 17 16 13 48 48 H 1.09000 * 109.46995 * 184.61821 * 17 16 13 49 49 H 0.97006 * 120.00307 * 0.27463 * 20 18 17 50 50 H 0.97008 * 119.99944 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.45720 * 181.75718 * 29 16 13 52 52 H 1.08994 * 109.46597 * 301.72570 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4632 0.0013 7 8 6.1817 1.3683 0.0021 8 7 6.4241 3.5736 0.0004 9 6 7.8845 3.4579 0.0011 10 1 8.1806 2.5914 0.5925 11 6 8.3847 3.2908 -1.4364 12 6 9.9147 3.2310 -1.4324 13 6 10.4684 4.5031 -0.7866 14 1 10.1508 5.3713 -1.3640 15 6 11.9969 4.4385 -0.7622 16 7 9.9615 4.6168 0.5869 17 6 10.5808 5.7519 1.2843 18 6 10.1731 7.0375 0.6121 19 8 9.5242 7.0070 -0.4123 20 7 10.5249 8.2212 1.1520 21 6 10.1493 9.3909 0.5434 22 1 9.5719 9.3638 -0.3688 23 6 10.5124 10.6113 1.0998 24 7 10.1519 11.7324 0.5168 25 14 11.5118 10.6582 2.6773 26 1 12.9594 10.6603 2.3462 27 1 11.1766 11.8879 3.4393 28 1 11.1940 9.4637 3.5003 29 6 8.4971 4.7235 0.6053 30 1 -0.3633 0.5139 0.8898 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8575 0.6434 -0.8891 36 1 3.8567 0.6439 0.8909 37 1 3.8358 3.1237 0.8896 38 1 3.8366 3.1227 -0.8904 39 1 6.0070 4.4493 -0.0006 40 1 8.0549 4.1381 -2.0376 41 1 7.9852 2.3680 -1.8572 42 1 10.2786 3.1550 -2.4570 43 1 10.2440 2.3612 -0.8638 44 1 12.3162 3.6448 -0.0869 45 1 12.3678 4.2324 -1.7663 46 1 12.3954 5.3922 -0.4163 47 1 11.6656 5.6517 1.2494 48 1 10.2503 5.7643 2.3229 49 1 11.0439 8.2456 1.9711 50 1 10.4051 12.5844 0.9054 51 1 8.1542 4.8376 1.6337 52 1 8.1887 5.5907 0.0215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131851961.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:48 Heat of formation + Delta-G solvation = -147.216042 kcal Electronic energy + Delta-G solvation = -30434.733318 eV Core-core repulsion = 26239.961382 eV Total energy + Delta-G solvation = -4194.771936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53103 -40.67310 -39.10128 -38.77343 -36.28140 -35.75486 -34.63665 -33.91641 -33.67007 -32.27667 -29.22728 -28.96778 -27.48279 -26.48825 -26.02294 -24.07966 -23.22283 -22.23397 -21.36898 -21.29359 -20.95308 -19.88401 -18.33992 -17.68271 -17.47334 -17.31001 -17.11494 -16.77348 -16.49751 -16.34558 -16.00808 -15.80455 -15.70109 -15.31069 -15.14645 -14.85070 -14.78625 -14.55823 -14.29877 -14.07424 -13.79765 -13.44389 -13.09366 -13.01330 -13.00497 -12.90427 -12.77446 -12.61261 -12.55296 -12.42260 -12.01687 -11.97405 -11.94390 -11.88250 -11.81809 -11.76532 -11.36560 -11.29110 -11.01157 -10.84308 -10.60524 -10.21281 -10.06289 -9.02168 -8.42371 -6.02058 1.30139 1.34331 1.43473 1.65462 1.92041 2.05604 2.21867 2.85298 2.96779 3.07203 3.15396 3.67081 3.79996 3.88963 3.97960 3.99765 4.07907 4.17097 4.23527 4.32986 4.44173 4.46331 4.47737 4.51287 4.52646 4.56772 4.58509 4.58954 4.64049 4.71465 4.75701 4.83835 4.86904 4.94346 5.02627 5.03849 5.12164 5.17266 5.19750 5.24459 5.25844 5.45118 5.52321 5.53955 5.92076 6.02287 6.11592 6.25791 6.55610 6.57880 6.88114 7.26057 7.39274 7.94470 8.74811 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013737 B = 0.002165 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.745712 B =12931.675022 C =14350.023416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.061 3.939 4 C -0.100 4.100 5 C -0.129 4.129 6 C 0.512 3.488 7 O -0.583 6.583 8 N -0.719 5.719 9 C 0.161 3.839 10 H 0.080 0.920 11 C -0.123 4.123 12 C -0.098 4.098 13 C 0.059 3.941 14 H 0.044 0.956 15 C -0.141 4.141 16 N -0.495 5.495 17 C 0.042 3.958 18 C 0.421 3.579 19 O -0.608 6.608 20 N -0.589 5.589 21 C -0.324 4.324 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.960 3.040 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.230 1.230 29 C 0.039 3.961 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.411 0.589 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.388 0.612 50 H 0.278 0.722 51 H 0.079 0.921 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.737 -18.866 3.664 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.169 4.169 6 C 0.300 3.700 7 O -0.463 6.463 8 N -0.370 5.370 9 C 0.056 3.944 10 H 0.098 0.902 11 C -0.161 4.161 12 C -0.137 4.137 13 C -0.049 4.049 14 H 0.062 0.938 15 C -0.198 4.198 16 N -0.218 5.218 17 C -0.090 4.090 18 C 0.209 3.791 19 O -0.494 6.494 20 N -0.230 5.230 21 C -0.453 4.453 22 H 0.075 0.925 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.781 3.219 26 H -0.184 1.184 27 H -0.203 1.203 28 H -0.154 1.154 29 C -0.089 4.089 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.247 0.753 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.567 -20.051 3.227 22.449 hybrid contribution -0.118 2.235 -0.001 2.238 sum -9.685 -17.816 3.226 20.533 Atomic orbital electron populations 1.22919 0.79394 1.03721 1.01011 1.87842 1.21601 1.29272 1.95667 1.22606 0.92785 0.84380 1.01732 1.21134 0.93465 0.96160 1.03014 1.21564 0.88987 0.99146 1.07167 1.21207 0.90849 0.83441 0.74465 1.90692 1.76153 1.28100 1.51340 1.46029 1.06476 1.09703 1.74783 1.20684 0.79382 0.98061 0.96294 0.90176 1.21862 0.96752 1.01076 0.96456 1.21506 0.93926 0.97351 1.00898 1.21904 0.96009 0.97911 0.89088 0.93763 1.21844 0.93317 1.01844 1.02802 1.62459 1.05097 1.37566 1.16679 1.22357 1.02760 0.84559 0.99279 1.22207 0.83584 0.86476 0.86867 1.90462 1.44252 1.87324 1.27335 1.42263 1.50233 1.05378 1.25092 1.18987 1.33606 0.83851 1.08888 0.92516 1.26086 0.98759 0.93822 1.02643 1.69804 1.46981 0.98481 1.42120 0.85423 0.78951 0.79865 0.77689 1.18373 1.20250 1.15366 1.22369 0.88601 0.96719 1.01257 0.92955 0.93031 0.88906 0.91545 0.91684 0.92392 0.92215 0.85938 0.86216 0.75280 0.93089 0.92078 0.90521 0.90593 0.90399 0.91413 0.93680 0.85921 0.86409 0.77645 0.91247 0.90273 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.97 10.70 -148.98 -1.59 -9.57 16 3 C 0.06 0.87 5.94 71.98 0.43 1.29 16 4 C -0.10 -1.78 4.87 30.59 0.15 -1.63 16 5 C -0.13 -1.84 5.70 29.85 0.17 -1.67 16 6 C 0.51 11.82 7.80 87.66 0.68 12.50 16 7 O -0.58 -18.47 15.65 -3.03 -0.05 -18.52 16 8 N -0.72 -16.00 5.08 -442.29 -2.25 -18.25 16 9 C 0.16 4.30 2.62 45.04 0.12 4.41 16 10 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 11 C -0.12 -3.35 5.58 30.67 0.17 -3.18 16 12 C -0.10 -2.54 5.37 30.64 0.16 -2.37 16 13 C 0.06 1.75 2.05 44.94 0.09 1.84 16 14 H 0.04 1.72 5.69 -2.39 -0.01 1.70 16 15 C -0.14 -3.51 8.52 71.98 0.61 -2.89 16 16 N -0.50 -14.26 4.69 -875.64 -4.11 -18.37 16 17 C 0.04 1.23 5.45 85.56 0.47 1.69 16 18 C 0.42 17.39 7.18 87.66 0.63 18.02 16 19 O -0.61 -29.93 11.22 -3.08 -0.03 -29.97 16 20 N -0.59 -26.16 5.09 -306.99 -1.56 -27.73 16 21 C -0.32 -18.13 10.16 84.04 0.85 -17.28 16 22 H 0.06 3.80 7.39 -2.91 -0.02 3.77 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.93 -54.89 13.96 21.66 0.30 -54.58 16 25 Si 0.96 37.66 27.74 68.60 1.90 39.56 16 26 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 27 H -0.28 -10.90 7.11 99.48 0.71 -10.20 16 28 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 29 C 0.04 1.15 4.47 86.33 0.39 1.53 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.06 1.26 8.10 -2.38 -0.02 1.24 16 36 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.41 7.55 8.60 -92.71 -0.80 6.75 16 40 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.04 1.21 6.65 -2.39 -0.02 1.19 16 47 H 0.12 3.04 6.10 -2.39 -0.01 3.02 16 48 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 49 H 0.39 14.42 5.76 -92.70 -0.53 13.89 16 50 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 51 H 0.08 2.13 8.12 -2.39 -0.02 2.11 16 52 H 0.05 1.81 5.68 -2.39 -0.01 1.79 16 Total: -1.00 -77.33 407.13 -1.22 -78.55 By element: Atomic # 1 Polarization: 45.84 SS G_CDS: -0.47 Total: 45.37 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.64 Total: 13.51 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -7.62 Total: -118.94 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -1.68 Total: -58.06 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Total: -77.33 -1.22 -78.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131851961.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.662 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds