Wall clock time and date at job start Wed Apr 1 2020 00:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46930 * 2 1 4 4 O 1.42903 * 109.46745 * 179.97438 * 3 2 1 5 5 C 1.42898 * 113.99708 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47231 * 180.02562 * 5 4 3 7 7 O 1.21276 * 119.99796 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00098 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00185 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50520 * 35.07631 * 9 8 6 11 11 C 1.53128 * 109.50484 * 275.00168 * 9 8 6 12 12 C 1.53110 * 109.16132 * 182.36155 * 11 9 8 13 13 C 1.53036 * 109.28050 * 57.65614 * 12 11 9 14 14 H 1.09002 * 109.46372 * 60.83497 * 13 12 11 15 15 C 1.52996 * 109.46622 * 180.80237 * 13 12 11 16 16 N 1.46846 * 109.52430 * 300.82128 * 13 12 11 17 17 C 1.46901 * 111.00244 * 185.83861 * 16 13 12 18 18 C 1.50702 * 109.47238 * 163.93032 * 17 16 13 19 19 O 1.21295 * 119.99765 * 0.02562 * 18 17 16 20 20 N 1.34770 * 119.99910 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99666 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00071 * 0.02562 * 21 20 18 23 23 C 1.38959 * 119.99634 * 179.73167 * 21 20 18 24 24 N 1.31409 * 120.00177 * 0.27031 * 23 21 20 25 25 Si 1.86801 * 119.99964 * 180.27498 * 23 21 20 26 26 H 1.48512 * 109.46970 * 59.99353 * 25 23 21 27 27 H 1.48496 * 109.47260 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46824 * 299.99879 * 25 23 21 29 29 C 1.46846 * 111.19773 * 61.73751 * 16 13 12 30 30 H 1.09003 * 109.46755 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47181 * 299.99936 * 1 2 3 32 32 H 1.08996 * 109.47110 * 60.00280 * 1 2 3 33 33 H 1.09001 * 109.47181 * 240.00064 * 2 1 3 34 34 H 1.09001 * 109.47502 * 120.00000 * 2 1 3 35 35 H 1.09000 * 109.46805 * 60.00742 * 3 2 1 36 36 H 1.08996 * 109.46995 * 299.99790 * 3 2 1 37 37 H 1.09005 * 109.47084 * 60.00134 * 5 4 3 38 38 H 1.09000 * 109.47265 * 300.00596 * 5 4 3 39 39 H 0.97000 * 119.99773 * 0.02562 * 8 6 5 40 40 H 1.09009 * 109.51924 * 62.45787 * 11 9 8 41 41 H 1.08995 * 109.57185 * 302.30235 * 11 9 8 42 42 H 1.08997 * 109.50744 * 297.71635 * 12 11 9 43 43 H 1.09001 * 109.50402 * 177.59257 * 12 11 9 44 44 H 1.09003 * 109.47474 * 187.50386 * 15 13 12 45 45 H 1.08996 * 109.47058 * 307.50302 * 15 13 12 46 46 H 1.08996 * 109.47412 * 67.50317 * 15 13 12 47 47 H 1.09001 * 109.47303 * 43.92911 * 17 16 13 48 48 H 1.09008 * 109.46703 * 283.92925 * 17 16 13 49 49 H 0.96996 * 120.00502 * 0.02562 * 20 18 17 50 50 H 0.96997 * 119.99822 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.46379 * 58.27788 * 29 16 13 52 52 H 1.09003 * 109.45999 * 178.24660 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6291 0.0001 7 8 6.0740 1.5342 0.0001 8 7 6.3164 3.7394 -0.0008 9 6 7.7768 3.6238 -0.0013 10 1 8.0730 2.7565 -0.5914 11 6 8.2771 3.4589 1.4365 12 6 9.8070 3.3981 1.4324 13 6 10.3614 4.6688 0.7844 14 1 10.0444 5.5383 1.3603 15 6 11.8898 4.6035 0.7600 16 7 9.8545 4.7806 -0.5893 17 6 10.4744 5.9139 -1.2887 18 6 10.2491 5.7729 -2.7721 19 8 9.6323 4.8220 -3.2041 20 7 10.7320 6.7038 -3.6185 21 6 10.5266 6.5757 -4.9680 22 1 9.9774 5.7291 -5.3526 23 6 11.0197 7.5385 -5.8402 24 7 11.6875 8.5690 -5.3722 25 14 10.7332 7.3681 -7.6783 26 1 9.2737 7.3495 -7.9521 27 1 11.3544 8.5170 -8.3847 28 1 11.3431 6.1023 -8.1590 29 6 8.3901 4.8880 -0.6077 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 3.7282 3.2894 0.8896 38 1 3.7289 3.2884 -0.8903 39 1 5.8992 4.6151 -0.0012 40 1 7.8770 2.5366 1.8578 41 1 7.9478 4.3067 2.0372 42 1 10.1351 2.5273 0.8648 43 1 10.1710 3.3237 2.4571 44 1 12.2891 5.5600 0.4226 45 1 12.2603 4.3884 1.7622 46 1 12.2090 3.8157 0.0777 47 1 11.5448 5.9262 -1.0833 48 1 10.0268 6.8447 -0.9400 49 1 11.2249 7.4645 -3.2730 50 1 12.0313 9.2412 -5.9810 51 1 8.0822 5.7564 -0.0252 52 1 8.0471 5.0006 -1.6362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131881371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:22 Heat of formation + Delta-G solvation = -148.673694 kcal Electronic energy + Delta-G solvation = -30176.400081 eV Core-core repulsion = 25981.564936 eV Total energy + Delta-G solvation = -4194.835145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34950 -40.47960 -39.36160 -38.64632 -36.19318 -35.87725 -34.60088 -33.86903 -33.21339 -32.50769 -29.49517 -29.10220 -27.38069 -26.50240 -26.10115 -24.24122 -22.68566 -22.42448 -21.62908 -21.03873 -20.65355 -19.82872 -18.37847 -18.03769 -17.74027 -17.50425 -16.95136 -16.57847 -16.43076 -16.26957 -16.01657 -15.68403 -15.59694 -15.41667 -15.04601 -14.91763 -14.54541 -14.48928 -14.29268 -13.84693 -13.53512 -13.41570 -13.23925 -13.07812 -13.03182 -12.97636 -12.89192 -12.77605 -12.59073 -12.42200 -12.13150 -12.03194 -11.90030 -11.83915 -11.80746 -11.78649 -11.44098 -11.35166 -10.85935 -10.69541 -10.30668 -10.11124 -9.97440 -9.15870 -8.44754 -5.92755 1.39243 1.41070 1.51464 1.52809 1.72276 2.09392 2.28973 2.71527 3.00589 3.22060 3.44257 3.61504 3.79477 3.84178 3.93796 4.02293 4.06286 4.09312 4.20904 4.25604 4.27359 4.33881 4.40751 4.42916 4.47496 4.52151 4.55542 4.60324 4.63806 4.63964 4.83800 4.86140 4.86536 4.99347 5.04201 5.08531 5.15202 5.19164 5.22039 5.29663 5.33844 5.37599 5.42095 5.48224 5.91991 6.08174 6.10958 6.28541 6.52341 6.63941 7.15886 7.20391 7.60170 8.17137 8.72238 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009700 B = 0.002363 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2885.961375 B =11844.945028 C =14336.111833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.055 3.945 4 O -0.403 6.403 5 C 0.049 3.951 6 C 0.508 3.492 7 O -0.575 6.575 8 N -0.710 5.710 9 C 0.158 3.842 10 H 0.051 0.949 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.080 3.920 14 H 0.061 0.939 15 C -0.149 4.149 16 N -0.532 5.532 17 C 0.056 3.944 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.275 1.275 29 C 0.063 3.937 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.417 0.583 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.116 0.884 48 H 0.072 0.928 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.058 0.942 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 -4.009 18.822 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C -0.021 4.021 4 O -0.322 6.322 5 C -0.030 4.030 6 C 0.295 3.705 7 O -0.454 6.454 8 N -0.363 5.363 9 C 0.053 3.947 10 H 0.069 0.931 11 C -0.157 4.157 12 C -0.142 4.142 13 C -0.028 4.028 14 H 0.079 0.921 15 C -0.206 4.206 16 N -0.258 5.258 17 C -0.075 4.075 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.200 1.200 29 C -0.066 4.066 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.254 0.746 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.133 0.867 48 H 0.090 0.910 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.817 -5.855 18.192 24.182 hybrid contribution -0.117 1.458 -0.897 1.716 sum -14.934 -4.397 17.294 23.269 Atomic orbital electron populations 1.21664 0.92788 1.02885 1.02763 1.21497 0.97177 0.95306 1.02520 1.22842 0.78753 0.98699 1.01781 1.87973 1.21656 1.26784 1.95797 1.22304 0.88580 0.86742 1.05374 1.20984 0.90303 0.83962 0.75256 1.90711 1.75830 1.28597 1.50245 1.45730 1.06298 1.09317 1.74984 1.20701 0.78911 0.97910 0.97166 0.93079 1.21887 0.96383 1.02507 0.94919 1.21583 0.94077 0.97114 1.01460 1.21810 0.96036 0.98127 0.86788 0.92100 1.21950 0.93462 1.02145 1.03063 1.61261 1.05176 1.42774 1.16601 1.21807 1.02393 0.93194 0.90061 1.20885 0.83169 0.83620 0.89506 1.90501 1.46006 1.34181 1.79539 1.41912 1.50054 1.23184 1.06129 1.19565 1.34683 1.08761 0.83005 0.90673 1.25970 0.96062 0.94770 1.04387 1.69656 1.36891 1.11886 1.37573 0.85050 0.78579 0.77918 0.77148 1.19776 1.19394 1.20046 1.22116 0.87873 0.95859 1.00721 0.91566 0.91483 0.91913 0.92481 0.91908 0.91117 0.91895 0.86559 0.87889 0.74624 0.92511 0.89573 0.92982 0.88238 0.91938 0.89518 0.93423 0.86666 0.90982 0.77028 0.91367 0.92413 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.13 -1.95 6.30 30.60 0.19 -1.76 16 3 C 0.06 0.84 5.94 71.99 0.43 1.27 16 4 O -0.40 -9.68 9.88 -129.94 -1.28 -10.96 16 5 C 0.05 0.89 6.42 71.24 0.46 1.35 16 6 C 0.51 13.85 7.87 87.66 0.69 14.54 16 7 O -0.58 -22.28 16.16 16.02 0.26 -22.03 16 8 N -0.71 -16.37 5.08 -442.29 -2.25 -18.62 16 9 C 0.16 4.53 2.61 45.05 0.12 4.65 16 10 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 11 C -0.12 -2.69 5.58 30.67 0.17 -2.52 16 12 C -0.10 -2.28 5.37 30.64 0.16 -2.11 16 13 C 0.08 1.83 2.44 44.94 0.11 1.94 16 14 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 15 C -0.15 -3.12 8.57 71.98 0.62 -2.51 16 16 N -0.53 -16.88 4.12 -875.64 -3.61 -20.49 16 17 C 0.06 1.90 5.26 85.56 0.45 2.35 16 18 C 0.44 20.95 7.47 87.66 0.65 21.60 16 19 O -0.62 -34.57 14.42 -3.08 -0.04 -34.62 16 20 N -0.57 -29.37 5.29 -306.98 -1.62 -31.00 16 21 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -49.35 13.05 21.67 0.28 -49.07 16 25 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 29 C 0.06 1.89 4.58 86.33 0.40 2.29 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.42 6.37 8.60 -92.71 -0.80 5.57 16 40 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 1.26 6.44 -2.39 -0.02 1.24 16 45 H 0.09 1.34 8.13 -2.39 -0.02 1.32 16 46 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.12 3.47 5.55 -2.39 -0.01 3.45 16 48 H 0.07 2.10 8.05 -2.38 -0.02 2.08 16 49 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 50 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 51 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.06 2.27 6.35 -2.39 -0.02 2.25 16 Total: -1.00 -80.31 416.73 -0.41 -80.72 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.61 Total: 38.56 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 6.44 Total: 22.18 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -7.20 Total: -119.17 kcal Atomic # 8 Polarization: -66.53 SS G_CDS: -1.07 Total: -67.60 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -80.31 -0.41 -80.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131881371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.956 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds