Wall clock time and date at job start Wed Apr 1 2020 00:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47308 * 2 1 4 4 O 1.42902 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.42903 * 113.99824 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46539 * 180.02562 * 5 4 3 7 7 O 1.21271 * 120.00249 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99517 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00143 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.49918 * 34.99327 * 9 8 6 11 11 C 1.53131 * 109.49962 * 274.92306 * 9 8 6 12 12 C 1.53199 * 109.11357 * 297.67036 * 11 9 8 13 13 C 1.53041 * 109.30146 * 302.37375 * 12 11 9 14 14 H 1.08999 * 109.45656 * 299.16320 * 13 12 11 15 15 C 1.53000 * 109.45928 * 179.19983 * 13 12 11 16 16 N 1.46847 * 109.52361 * 59.18026 * 13 12 11 17 17 C 1.46900 * 110.99585 * 174.16228 * 16 13 12 18 18 C 1.50697 * 109.46627 * 199.70716 * 17 16 13 19 19 O 1.21297 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00457 * 179.97438 * 20 18 17 22 22 H 1.08006 * 119.99833 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00383 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99373 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00117 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47350 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47312 * 120.00283 * 25 23 21 28 28 H 1.48503 * 109.47279 * 240.00235 * 25 23 21 29 29 C 1.46841 * 111.19562 * 298.25786 * 16 13 12 30 30 H 1.08998 * 109.47250 * 300.00065 * 1 2 3 31 31 H 1.08999 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46723 * 59.99633 * 1 2 3 33 33 H 1.09010 * 109.46783 * 120.00065 * 2 1 3 34 34 H 1.08998 * 109.46902 * 239.99517 * 2 1 3 35 35 H 1.08997 * 109.47528 * 299.99873 * 3 2 1 36 36 H 1.09008 * 109.47004 * 59.99883 * 3 2 1 37 37 H 1.08996 * 109.47066 * 300.00120 * 5 4 3 38 38 H 1.09000 * 109.46880 * 60.00756 * 5 4 3 39 39 H 0.97009 * 120.00238 * 0.02562 * 8 6 5 40 40 H 1.08996 * 109.52156 * 57.61513 * 11 9 8 41 41 H 1.08994 * 109.51724 * 177.80686 * 11 9 8 42 42 H 1.08998 * 109.49445 * 182.42539 * 12 11 9 43 43 H 1.08998 * 109.52716 * 62.34293 * 12 11 9 44 44 H 1.09002 * 109.47033 * 291.82721 * 15 13 12 45 45 H 1.08992 * 109.47637 * 51.83379 * 15 13 12 46 46 H 1.09004 * 109.46669 * 171.83412 * 15 13 12 47 47 H 1.08994 * 109.47568 * 319.70571 * 17 16 13 48 48 H 1.08996 * 109.46992 * 79.71042 * 17 16 13 49 49 H 0.97001 * 119.99792 * 0.02562 * 20 18 17 50 50 H 0.96999 * 119.99584 * 180.02562 * 24 23 21 51 51 H 1.08999 * 109.46798 * 301.72955 * 29 16 13 52 52 H 1.09007 * 109.45397 * 181.75140 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0503 2.7479 0.0001 6 6 5.5526 2.6287 0.0001 7 8 6.0741 1.5339 0.0011 8 7 6.3166 3.7391 0.0002 9 6 7.7770 3.6234 -0.0003 10 1 8.0731 2.7558 -0.5899 11 6 8.2773 3.4592 1.4377 12 6 7.9089 4.7094 2.2428 13 6 8.5175 5.9419 1.5701 14 1 9.6029 5.8443 1.5472 15 6 8.1351 7.1950 2.3603 16 7 8.0073 6.0541 0.1977 17 6 8.4618 7.3008 -0.4326 18 6 7.5703 7.6257 -1.6033 19 8 6.6469 6.8913 -1.8847 20 7 7.7984 8.7329 -2.3371 21 6 6.9878 9.0283 -3.4026 22 1 6.1661 8.3739 -3.6536 23 6 7.2227 10.1702 -4.1588 24 7 8.2222 10.9666 -3.8530 25 14 6.1177 10.5729 -5.6100 26 1 5.0738 9.5252 -5.7431 27 1 5.4711 11.8913 -5.3889 28 1 6.9301 10.6221 -6.8521 29 6 8.3895 4.8874 -0.6079 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.6768 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.7290 3.2882 -0.8903 38 1 3.7284 3.2892 0.8897 39 1 5.8994 4.6149 0.0006 40 1 7.8097 2.5837 1.8882 41 1 9.3600 3.3341 1.4345 42 1 8.2997 4.6177 3.2562 43 1 6.8244 4.8129 2.2791 44 1 7.0642 7.3734 2.2626 45 1 8.3852 7.0521 3.4115 46 1 8.6834 8.0522 1.9696 47 1 8.4178 8.1122 0.2938 48 1 9.4878 7.1793 -0.7798 49 1 8.5367 9.3205 -2.1119 50 1 8.3859 11.7638 -4.3806 51 1 9.4755 4.7947 -0.6206 52 1 8.0239 5.0143 -1.6270 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131881373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:30 Heat of formation + Delta-G solvation = -145.955352 kcal Electronic energy + Delta-G solvation = -30816.804485 eV Core-core repulsion = 26622.087216 eV Total energy + Delta-G solvation = -4194.717269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.40337 -40.35234 -39.34129 -38.57451 -36.01398 -35.71492 -34.59306 -33.71804 -33.16554 -32.49887 -29.36412 -29.06260 -27.51425 -26.47248 -26.23704 -24.18558 -22.66322 -22.40558 -21.70207 -20.90020 -20.19738 -19.79268 -18.37391 -17.84789 -17.70881 -17.51774 -16.84990 -16.66025 -16.49769 -16.16743 -16.03224 -15.63758 -15.52015 -15.35986 -14.95611 -14.92537 -14.40682 -14.37033 -14.01961 -13.96930 -13.67845 -13.41178 -13.11747 -13.06698 -13.02178 -12.89746 -12.86278 -12.81906 -12.62268 -12.36537 -12.35227 -12.11011 -11.84997 -11.80376 -11.73721 -11.66235 -11.40872 -11.12075 -10.83767 -10.70620 -10.26522 -9.98196 -9.93058 -9.16365 -8.42394 -5.89478 1.37762 1.43040 1.56131 1.59016 1.87060 2.14296 2.30106 2.71714 3.02344 3.25390 3.46022 3.67903 3.81835 3.86667 4.00312 4.01702 4.08988 4.10696 4.21226 4.26045 4.35821 4.40545 4.42082 4.44297 4.47377 4.55314 4.56061 4.58809 4.62846 4.67456 4.83746 4.85065 4.90180 5.00921 5.03908 5.09099 5.14150 5.21996 5.22910 5.32315 5.34269 5.44233 5.45745 5.57728 5.93182 6.07524 6.12525 6.27994 6.62413 6.67179 7.19276 7.25614 7.64913 8.20434 8.75330 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008567 B = 0.002847 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3267.473400 B = 9834.020282 C =12393.218115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.052 3.948 4 O -0.396 6.396 5 C 0.046 3.954 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.697 5.697 9 C 0.156 3.844 10 H 0.072 0.928 11 C -0.124 4.124 12 C -0.100 4.100 13 C 0.080 3.920 14 H 0.052 0.948 15 C -0.147 4.147 16 N -0.520 5.520 17 C 0.052 3.948 18 C 0.446 3.554 19 O -0.607 6.607 20 N -0.580 5.580 21 C -0.323 4.323 22 H 0.079 0.921 23 C -0.016 4.016 24 N -0.923 5.923 25 Si 0.988 3.012 26 H -0.273 1.273 27 H -0.273 1.273 28 H -0.275 1.275 29 C 0.057 3.943 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.416 0.584 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.116 0.884 48 H 0.065 0.935 49 H 0.394 0.606 50 H 0.275 0.725 51 H 0.058 0.942 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 -11.833 14.112 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.024 4.024 4 O -0.315 6.315 5 C -0.033 4.033 6 C 0.297 3.703 7 O -0.457 6.457 8 N -0.350 5.350 9 C 0.051 3.949 10 H 0.090 0.910 11 C -0.163 4.163 12 C -0.138 4.138 13 C -0.028 4.028 14 H 0.070 0.930 15 C -0.204 4.204 16 N -0.245 5.245 17 C -0.079 4.079 18 C 0.233 3.767 19 O -0.492 6.492 20 N -0.218 5.218 21 C -0.453 4.453 22 H 0.097 0.903 23 C -0.215 4.215 24 N -0.565 5.565 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.201 1.201 29 C -0.071 4.071 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.253 0.747 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.133 0.867 48 H 0.083 0.917 49 H 0.227 0.773 50 H 0.084 0.916 51 H 0.076 0.924 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.163 -13.080 13.869 19.751 hybrid contribution 0.575 1.289 -1.132 1.810 sum -4.588 -11.791 12.737 17.953 Atomic orbital electron populations 1.21673 0.92876 1.02970 1.02652 1.21473 0.97088 0.94832 1.02716 1.22856 0.79001 0.99008 1.01489 1.87946 1.21445 1.26363 1.95736 1.22249 0.89964 0.86604 1.04507 1.20699 0.89826 0.84155 0.75667 1.90656 1.75624 1.28086 1.51288 1.45853 1.06723 1.09028 1.73371 1.20922 0.79727 0.96816 0.97463 0.90953 1.21936 1.01672 0.98568 0.94115 1.21568 1.01338 0.92064 0.98842 1.21785 0.97321 0.96653 0.87021 0.93002 1.21932 1.02007 0.96140 1.00346 1.61382 1.60858 1.00185 1.02123 1.21829 0.95984 0.94637 0.95459 1.20792 0.87696 0.82252 0.85936 1.90462 1.34768 1.51345 1.72620 1.41954 1.29686 1.22729 1.27440 1.19640 1.11088 1.07814 1.06709 0.90277 1.25964 0.98542 0.95533 1.01479 1.69676 1.30305 1.14759 1.41731 0.84932 0.78002 0.78130 0.77670 1.19759 1.19810 1.20069 1.22259 0.98115 0.89435 0.97329 0.91676 0.91232 0.92083 0.91655 0.92156 0.92339 0.91548 0.89092 0.87674 0.74703 0.92310 0.89732 0.89261 0.91938 0.92712 0.89981 0.92319 0.86659 0.91742 0.77269 0.91567 0.92403 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.12 -2.13 6.30 30.59 0.19 -1.94 16 3 C 0.05 1.01 5.94 71.98 0.43 1.43 16 4 O -0.40 -10.85 9.88 -129.94 -1.28 -12.14 16 5 C 0.05 1.12 6.42 71.24 0.46 1.58 16 6 C 0.51 15.58 7.87 87.66 0.69 16.27 16 7 O -0.58 -22.09 16.16 16.04 0.26 -21.83 16 8 N -0.70 -19.66 4.41 -442.28 -1.95 -21.60 16 9 C 0.16 4.21 2.81 45.05 0.13 4.33 16 10 H 0.07 2.18 7.58 -2.39 -0.02 2.16 16 11 C -0.12 -2.69 5.68 30.70 0.17 -2.52 16 12 C -0.10 -1.89 5.20 30.67 0.16 -1.73 16 13 C 0.08 1.62 2.44 44.94 0.11 1.73 16 14 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 15 C -0.15 -2.69 8.58 71.98 0.62 -2.08 16 16 N -0.52 -14.27 3.53 -875.67 -3.09 -17.37 16 17 C 0.05 1.61 5.31 85.56 0.45 2.06 16 18 C 0.45 19.59 7.49 87.66 0.66 20.25 16 19 O -0.61 -30.40 14.73 -3.08 -0.05 -30.45 16 20 N -0.58 -28.37 5.29 -306.98 -1.62 -29.99 16 21 C -0.32 -17.70 9.68 84.04 0.81 -16.89 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 24 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 25 Si 0.99 42.39 29.55 68.60 2.03 44.41 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 29 C 0.06 1.63 4.70 86.33 0.41 2.03 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.42 11.96 8.17 -92.70 -0.76 11.20 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.31 7.73 -2.39 -0.02 1.29 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.13 8.13 -2.39 -0.02 1.12 16 46 H 0.06 1.08 6.41 -2.39 -0.02 1.06 16 47 H 0.12 3.16 5.43 -2.39 -0.01 3.15 16 48 H 0.06 1.84 8.00 -2.39 -0.02 1.82 16 49 H 0.39 18.49 7.90 -92.71 -0.73 17.76 16 50 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 51 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.06 2.19 6.69 -2.38 -0.02 2.17 16 Total: -1.00 -70.10 415.38 0.47 -69.63 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -0.57 Total: 44.97 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 6.47 Total: 23.14 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -6.38 Total: -117.74 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: -1.07 Total: -64.41 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -70.10 0.47 -69.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131881373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.322 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds