Wall clock time and date at job start Wed Apr 1 2020 00:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 O 1.42896 * 109.47529 * 120.00054 * 2 1 3 5 5 C 1.42896 * 114.00182 * 149.99922 * 4 2 1 6 6 C 1.50704 * 109.47113 * 180.02562 * 5 4 2 7 7 O 1.21271 * 120.00114 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00194 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.53236 * 325.10348 * 9 8 6 11 11 C 1.53123 * 109.50016 * 85.20043 * 9 8 6 12 12 C 1.53113 * 109.16356 * 62.28408 * 11 9 8 13 13 C 1.53040 * 109.27742 * 57.65570 * 12 11 9 14 14 H 1.09002 * 109.45757 * 60.83231 * 13 12 11 15 15 C 1.52992 * 109.45460 * 180.81012 * 13 12 11 16 16 N 1.46845 * 109.52226 * 300.82025 * 13 12 11 17 17 C 1.46902 * 110.99825 * 185.83541 * 16 13 12 18 18 C 1.50702 * 109.47117 * 160.22325 * 17 16 13 19 19 O 1.21298 * 120.00001 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00184 * 180.02562 * 18 17 16 21 21 C 1.37107 * 120.00040 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99842 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99975 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99712 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00021 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47320 * 59.99154 * 25 23 21 27 27 H 1.48493 * 109.47302 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46942 * 299.99639 * 25 23 21 29 29 C 1.46847 * 111.19847 * 61.74306 * 16 13 12 30 30 H 1.08991 * 109.47328 * 299.99834 * 1 2 3 31 31 H 1.08995 * 109.47310 * 59.99929 * 1 2 3 32 32 H 1.09001 * 109.46610 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47309 * 240.00107 * 2 1 3 34 34 H 1.09001 * 109.46936 * 59.99879 * 3 2 1 35 35 H 1.09000 * 109.47259 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47394 * 300.00123 * 3 2 1 37 37 H 1.09004 * 109.47436 * 60.00258 * 5 4 2 38 38 H 1.09004 * 109.47650 * 300.00223 * 5 4 2 39 39 H 0.97005 * 119.99854 * 0.02562 * 8 6 5 40 40 H 1.09010 * 109.51770 * 302.38306 * 11 9 8 41 41 H 1.09001 * 109.52227 * 182.19610 * 11 9 8 42 42 H 1.08999 * 109.50449 * 297.71595 * 12 11 9 43 43 H 1.09002 * 109.50554 * 177.59691 * 12 11 9 44 44 H 1.09002 * 109.47140 * 187.76047 * 15 13 12 45 45 H 1.09002 * 109.47335 * 307.75383 * 15 13 12 46 46 H 1.08992 * 109.47790 * 67.76031 * 15 13 12 47 47 H 1.08998 * 109.47369 * 280.22318 * 17 16 13 48 48 H 1.08997 * 109.47347 * 40.22462 * 17 16 13 49 49 H 0.97000 * 120.00571 * 359.97438 * 20 18 17 50 50 H 0.97000 * 119.99581 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.46482 * 58.27388 * 29 16 13 52 52 H 1.09003 * 109.46482 * 178.24228 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3244 0.9885 6 6 3.6694 -1.9988 2.2745 7 8 2.9494 -1.9286 3.2478 8 7 4.8308 -2.6791 2.3431 9 6 5.2233 -3.3342 3.5934 10 1 4.8896 -2.7338 4.4397 11 6 4.5811 -4.7223 3.6665 12 6 5.1010 -5.5783 2.5084 13 6 6.6275 -5.6581 2.5847 14 1 6.9201 -6.1229 3.5262 15 6 7.1529 -6.4960 1.4174 16 7 7.1939 -4.3054 2.5099 17 6 8.6606 -4.3519 2.4410 18 6 9.1791 -3.0492 1.8886 19 8 8.4032 -2.1684 1.5829 20 7 10.5049 -2.8627 1.7343 21 6 10.9766 -1.6773 1.2323 22 1 10.2857 -0.8931 0.9601 23 6 12.3435 -1.4853 1.0727 24 7 13.1841 -2.4397 1.4034 25 14 12.9862 0.1295 0.3881 26 1 12.5683 1.2446 1.2753 27 1 14.4687 0.0823 0.3178 28 1 12.4323 0.3455 -0.9727 29 6 6.7461 -3.4791 3.6382 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 4.0201 -0.5873 0.7124 38 1 3.1810 -2.0706 0.1985 39 1 5.4073 -2.7343 1.5649 40 1 3.4978 -4.6269 3.5912 41 1 4.8411 -5.1945 4.6139 42 1 4.8072 -5.1262 1.5611 43 1 4.6802 -6.5813 2.5796 44 1 8.2214 -6.6689 1.5462 45 1 6.6306 -7.4525 1.3927 46 1 6.9812 -5.9640 0.4818 47 1 9.0664 -4.5101 3.4401 48 1 8.9680 -5.1704 1.7902 49 1 11.1255 -3.5669 1.9791 50 1 14.1383 -2.3055 1.2924 51 1 7.0383 -3.9540 4.5747 52 1 7.2068 -2.4934 3.5719 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131890834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:57 Heat of formation + Delta-G solvation = -121.582519 kcal Electronic energy + Delta-G solvation = -31136.800156 eV Core-core repulsion = 26943.139773 eV Total energy + Delta-G solvation = -4193.660383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24645 -39.11639 -38.08315 -37.48765 -34.69517 -33.94445 -32.93285 -32.56535 -31.40163 -31.19234 -28.07428 -27.63799 -27.32153 -26.16254 -24.62225 -22.98881 -21.58762 -21.42238 -20.63732 -19.24459 -19.05409 -17.88133 -17.26749 -17.06722 -16.17688 -15.99859 -15.77042 -15.43094 -15.01152 -14.75352 -14.56991 -14.38389 -14.14018 -13.94345 -13.77461 -13.47549 -13.25562 -12.98111 -12.88816 -12.82957 -12.64067 -12.39038 -12.12827 -12.08482 -11.94464 -11.85691 -11.61210 -11.58317 -11.53082 -11.35765 -11.05118 -10.89859 -10.78225 -10.53808 -10.46774 -10.24509 -10.09211 -9.77801 -9.60061 -9.49441 -8.86593 -8.49098 -7.98945 -7.91284 -6.43531 -3.84311 2.77740 2.90188 3.17820 3.23971 3.27729 3.82278 3.90274 4.01795 4.21166 4.66164 4.74352 4.79231 4.82218 4.92986 4.95802 4.98813 5.02529 5.10763 5.21468 5.22017 5.23823 5.39005 5.39115 5.43046 5.50635 5.53979 5.57870 5.60722 5.63957 5.64477 5.78171 5.83472 5.91626 5.94245 5.96444 6.01703 6.03378 6.06172 6.19752 6.23103 6.30206 6.37543 6.69455 7.01195 7.20574 7.34287 7.52829 7.80567 8.04366 8.43881 8.60077 9.16425 9.53328 10.04832 10.74172 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008836 B = 0.003055 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.248808 B = 9162.376799 C =11649.684092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.078 3.922 3 C -0.177 4.177 4 O -0.359 6.359 5 C 0.043 3.957 6 C 0.514 3.486 7 O -0.535 6.535 8 N -0.703 5.703 9 C 0.157 3.843 10 H 0.088 0.912 11 C -0.133 4.133 12 C -0.107 4.107 13 C 0.079 3.921 14 H 0.038 0.962 15 C -0.150 4.150 16 N -0.510 5.510 17 C 0.039 3.961 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.566 5.566 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.049 3.951 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.048 0.952 48 H 0.095 0.905 49 H 0.391 0.609 50 H 0.272 0.728 51 H 0.041 0.959 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.019 -5.033 -1.097 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 C -0.235 4.235 4 O -0.277 6.277 5 C -0.037 4.037 6 C 0.299 3.701 7 O -0.412 6.412 8 N -0.357 5.357 9 C 0.052 3.948 10 H 0.106 0.894 11 C -0.172 4.172 12 C -0.145 4.145 13 C -0.029 4.029 14 H 0.056 0.944 15 C -0.207 4.207 16 N -0.235 5.235 17 C -0.092 4.092 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.079 4.079 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.254 0.746 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.067 0.933 48 H 0.113 0.887 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.059 0.941 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.115 -4.170 -0.873 18.610 hybrid contribution 1.741 -0.062 -0.080 1.744 sum -16.374 -4.233 -0.953 16.939 Atomic orbital electron populations 1.21841 0.93471 1.02733 1.02491 1.22154 0.95138 0.92610 0.88046 1.22319 1.01882 0.96667 1.02597 1.88039 1.34834 1.69721 1.35117 1.22244 0.88008 0.97290 0.96133 1.20187 0.81571 0.78822 0.89533 1.90683 1.52236 1.60678 1.37581 1.45833 1.21422 1.52662 1.15810 1.20894 0.93567 0.92955 0.87393 0.89434 1.21997 1.00864 0.95506 0.98798 1.21574 0.94021 0.99427 0.99448 1.21669 0.94819 0.88878 0.97569 0.94401 1.21944 1.00849 0.98979 0.98919 1.61446 1.07685 1.11064 1.43324 1.21985 0.87712 0.98991 1.00543 1.19759 0.83083 0.89014 0.85093 1.90481 1.55978 1.44658 1.55088 1.41868 1.05101 1.16590 1.56713 1.19620 0.91226 0.93344 1.38577 0.88021 1.25244 0.95852 0.99066 0.97768 1.69600 1.03371 1.33081 1.48336 0.85942 0.77371 0.81551 0.79494 1.19956 1.21017 1.19930 1.22422 0.93954 1.00032 0.91481 0.91680 0.91260 0.91995 0.92056 0.91653 0.92207 0.91631 0.90074 0.90474 0.74637 0.91307 0.91421 0.91067 0.91766 0.92325 0.92375 0.91395 0.93347 0.88724 0.77589 0.91853 0.94087 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.56 37.16 0.36 -0.90 16 2 C 0.08 0.78 3.34 -26.73 -0.09 0.69 16 3 C -0.18 -1.63 9.53 37.16 0.35 -1.28 16 4 O -0.36 -4.87 9.52 -55.14 -0.52 -5.40 16 5 C 0.04 0.53 6.23 36.01 0.22 0.76 16 6 C 0.51 7.73 7.87 -10.98 -0.09 7.64 16 7 O -0.54 -9.94 16.16 -14.35 -0.23 -10.17 16 8 N -0.70 -9.85 4.41 -53.73 -0.24 -10.09 16 9 C 0.16 2.14 2.81 -67.85 -0.19 1.94 16 10 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 11 C -0.13 -1.55 5.67 -26.61 -0.15 -1.70 16 12 C -0.11 -1.16 5.20 -26.65 -0.14 -1.29 16 13 C 0.08 0.92 2.44 -67.73 -0.17 0.76 16 14 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 15 C -0.15 -1.61 8.59 37.15 0.32 -1.29 16 16 N -0.51 -7.38 3.53 -228.13 -0.81 -8.18 16 17 C 0.04 0.63 5.31 -4.97 -0.03 0.60 16 18 C 0.45 9.73 7.49 -10.99 -0.08 9.65 16 19 O -0.58 -14.17 14.74 5.54 0.08 -14.08 16 20 N -0.57 -13.68 5.29 -10.96 -0.06 -13.73 16 21 C -0.30 -8.02 9.68 -14.93 -0.14 -8.16 16 22 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.06 13.05 55.50 0.72 -23.33 16 25 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 C 0.05 0.72 4.70 -3.83 -0.02 0.70 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 38 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 39 H 0.42 5.98 8.17 -40.82 -0.33 5.65 16 40 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.83 7.73 -51.93 -0.40 0.42 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.63 6.38 -51.93 -0.33 0.30 16 45 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.05 0.74 8.00 -51.93 -0.42 0.33 16 48 H 0.09 1.40 5.42 -51.93 -0.28 1.12 16 49 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 50 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 51 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.10 1.74 6.69 -51.93 -0.35 1.39 16 LS Contribution 414.14 15.07 6.24 6.24 Total: -1.00 -31.64 414.14 -8.82 -40.47 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -9.05 Total: 14.06 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 0.06 Total: 8.60 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.38 Total: -55.34 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.68 Total: -29.66 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.64 -8.82 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131890834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.117 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds