Wall clock time and date at job start Wed Apr 1 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 O 1.42896 * 109.47529 * 120.00054 * 2 1 3 5 5 C 1.42896 * 114.00182 * 149.99922 * 4 2 1 6 6 C 1.50704 * 109.47113 * 180.02562 * 5 4 2 7 7 O 1.21271 * 120.00114 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00194 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.53236 * 325.10348 * 9 8 6 11 11 C 1.53123 * 109.50016 * 85.20043 * 9 8 6 12 12 C 1.53113 * 109.16356 * 62.28408 * 11 9 8 13 13 C 1.53040 * 109.27742 * 57.65570 * 12 11 9 14 14 H 1.09002 * 109.45757 * 60.83231 * 13 12 11 15 15 C 1.52992 * 109.45460 * 180.81012 * 13 12 11 16 16 N 1.46845 * 109.52226 * 300.82025 * 13 12 11 17 17 C 1.46902 * 110.99825 * 185.83541 * 16 13 12 18 18 C 1.50702 * 109.47117 * 160.22325 * 17 16 13 19 19 O 1.21298 * 120.00001 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00184 * 180.02562 * 18 17 16 21 21 C 1.37107 * 120.00040 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99842 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99975 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99712 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00021 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47320 * 59.99154 * 25 23 21 27 27 H 1.48493 * 109.47302 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.46942 * 299.99639 * 25 23 21 29 29 C 1.46847 * 111.19847 * 61.74306 * 16 13 12 30 30 H 1.08991 * 109.47328 * 299.99834 * 1 2 3 31 31 H 1.08995 * 109.47310 * 59.99929 * 1 2 3 32 32 H 1.09001 * 109.46610 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47309 * 240.00107 * 2 1 3 34 34 H 1.09001 * 109.46936 * 59.99879 * 3 2 1 35 35 H 1.09000 * 109.47259 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47394 * 300.00123 * 3 2 1 37 37 H 1.09004 * 109.47436 * 60.00258 * 5 4 2 38 38 H 1.09004 * 109.47650 * 300.00223 * 5 4 2 39 39 H 0.97005 * 119.99854 * 0.02562 * 8 6 5 40 40 H 1.09010 * 109.51770 * 302.38306 * 11 9 8 41 41 H 1.09001 * 109.52227 * 182.19610 * 11 9 8 42 42 H 1.08999 * 109.50449 * 297.71595 * 12 11 9 43 43 H 1.09002 * 109.50554 * 177.59691 * 12 11 9 44 44 H 1.09002 * 109.47140 * 187.76047 * 15 13 12 45 45 H 1.09002 * 109.47335 * 307.75383 * 15 13 12 46 46 H 1.08992 * 109.47790 * 67.76031 * 15 13 12 47 47 H 1.08998 * 109.47369 * 280.22318 * 17 16 13 48 48 H 1.08997 * 109.47347 * 40.22462 * 17 16 13 49 49 H 0.97000 * 120.00571 * 359.97438 * 20 18 17 50 50 H 0.97000 * 119.99581 * 180.02562 * 24 23 21 51 51 H 1.08996 * 109.46482 * 58.27388 * 29 16 13 52 52 H 1.09003 * 109.46482 * 178.24228 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3244 0.9885 6 6 3.6694 -1.9988 2.2745 7 8 2.9494 -1.9286 3.2478 8 7 4.8308 -2.6791 2.3431 9 6 5.2233 -3.3342 3.5934 10 1 4.8896 -2.7338 4.4397 11 6 4.5811 -4.7223 3.6665 12 6 5.1010 -5.5783 2.5084 13 6 6.6275 -5.6581 2.5847 14 1 6.9201 -6.1229 3.5262 15 6 7.1529 -6.4960 1.4174 16 7 7.1939 -4.3054 2.5099 17 6 8.6606 -4.3519 2.4410 18 6 9.1791 -3.0492 1.8886 19 8 8.4032 -2.1684 1.5829 20 7 10.5049 -2.8627 1.7343 21 6 10.9766 -1.6773 1.2323 22 1 10.2857 -0.8931 0.9601 23 6 12.3435 -1.4853 1.0727 24 7 13.1841 -2.4397 1.4034 25 14 12.9862 0.1295 0.3881 26 1 12.5683 1.2446 1.2753 27 1 14.4687 0.0823 0.3178 28 1 12.4323 0.3455 -0.9727 29 6 6.7461 -3.4791 3.6382 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 4.0201 -0.5873 0.7124 38 1 3.1810 -2.0706 0.1985 39 1 5.4073 -2.7343 1.5649 40 1 3.4978 -4.6269 3.5912 41 1 4.8411 -5.1945 4.6139 42 1 4.8072 -5.1262 1.5611 43 1 4.6802 -6.5813 2.5796 44 1 8.2214 -6.6689 1.5462 45 1 6.6306 -7.4525 1.3927 46 1 6.9812 -5.9640 0.4818 47 1 9.0664 -4.5101 3.4401 48 1 8.9680 -5.1704 1.7902 49 1 11.1255 -3.5669 1.9791 50 1 14.1383 -2.3055 1.2924 51 1 7.0383 -3.9540 4.5747 52 1 7.2068 -2.4934 3.5719 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131890834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:56 Heat of formation + Delta-G solvation = -143.185883 kcal Electronic energy + Delta-G solvation = -31137.736948 eV Core-core repulsion = 26943.139773 eV Total energy + Delta-G solvation = -4194.597175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40707 -40.37456 -39.41251 -38.74245 -36.01237 -35.71224 -33.82366 -33.64680 -33.16528 -32.42519 -29.14447 -28.91120 -28.07724 -27.26169 -26.31767 -24.18502 -22.60600 -22.24960 -21.75665 -20.89799 -20.18991 -19.79032 -18.37873 -18.00855 -17.71853 -17.05499 -16.91945 -16.63523 -16.48065 -16.11768 -15.71051 -15.63574 -15.53799 -15.17873 -14.96626 -14.78080 -14.45987 -14.05415 -13.97565 -13.85040 -13.66609 -13.49858 -13.39910 -13.07975 -13.04434 -12.91489 -12.85573 -12.82499 -12.61964 -12.38986 -12.37831 -12.35057 -12.12430 -11.73759 -11.66307 -11.65855 -11.39555 -11.11872 -10.82457 -10.66663 -10.26342 -9.97851 -9.93100 -9.16404 -8.42019 -5.89374 1.41049 1.42846 1.52802 1.59576 1.88645 2.14542 2.30264 2.71856 3.04766 3.25620 3.46149 3.67693 3.80227 3.86572 4.00201 4.01044 4.08947 4.09736 4.18569 4.26383 4.30364 4.35771 4.42001 4.44302 4.47298 4.55749 4.58576 4.67489 4.73027 4.81194 4.84582 4.88444 4.90456 4.93622 5.00812 5.03934 5.09151 5.22917 5.26958 5.31923 5.32355 5.44204 5.45413 5.58069 5.93169 6.11332 6.15842 6.27985 6.63023 6.67380 7.19138 7.26228 7.64975 8.20542 8.75275 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008836 B = 0.003055 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3168.248808 B = 9162.376799 C =11649.684092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 C -0.176 4.176 4 O -0.388 6.388 5 C 0.046 3.954 6 C 0.510 3.490 7 O -0.576 6.576 8 N -0.697 5.697 9 C 0.156 3.844 10 H 0.072 0.928 11 C -0.124 4.124 12 C -0.100 4.100 13 C 0.080 3.920 14 H 0.052 0.948 15 C -0.147 4.147 16 N -0.520 5.520 17 C 0.052 3.948 18 C 0.446 3.554 19 O -0.607 6.607 20 N -0.580 5.580 21 C -0.326 4.326 22 H 0.080 0.920 23 C -0.015 4.015 24 N -0.923 5.923 25 Si 0.988 3.012 26 H -0.274 1.274 27 H -0.274 1.274 28 H -0.271 1.271 29 C 0.057 3.943 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.416 0.584 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.065 0.935 48 H 0.116 0.884 49 H 0.394 0.606 50 H 0.275 0.725 51 H 0.058 0.942 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.402 -6.428 -1.927 18.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.012 3.988 3 C -0.233 4.233 4 O -0.308 6.308 5 C -0.033 4.033 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.350 5.350 9 C 0.051 3.949 10 H 0.090 0.910 11 C -0.163 4.163 12 C -0.138 4.138 13 C -0.028 4.028 14 H 0.070 0.930 15 C -0.204 4.204 16 N -0.245 5.245 17 C -0.079 4.079 18 C 0.233 3.767 19 O -0.492 6.492 20 N -0.218 5.218 21 C -0.455 4.455 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.565 5.565 25 Si 0.812 3.188 26 H -0.200 1.200 27 H -0.199 1.199 28 H -0.196 1.196 29 C -0.071 4.071 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.253 0.747 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.227 0.773 50 H 0.085 0.915 51 H 0.076 0.924 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.495 -5.592 -1.709 19.397 hybrid contribution 1.786 0.366 0.189 1.833 sum -16.709 -5.226 -1.519 17.573 Atomic orbital electron populations 1.21861 0.92441 1.02822 1.03169 1.22441 0.96013 0.92738 0.87588 1.22317 1.01337 0.96512 1.03138 1.88011 1.35144 1.70282 1.37325 1.22276 0.88038 0.97924 0.95105 1.20707 0.81198 0.78379 0.90047 1.90655 1.53472 1.62286 1.39190 1.45855 1.21038 1.52274 1.15844 1.20916 0.93124 0.94132 0.86744 0.90970 1.21923 0.99951 0.94201 1.00212 1.21556 0.93370 1.00451 0.98432 1.21785 0.95124 0.87139 0.98731 0.93011 1.21932 1.01129 0.99708 0.97658 1.61382 1.06539 1.13087 1.43541 1.21833 0.88905 0.95858 1.01331 1.20788 0.82107 0.90526 0.83285 1.90461 1.56561 1.46367 1.55806 1.41944 1.06087 1.16080 1.57658 1.19583 0.91559 0.94218 1.40173 0.90238 1.25958 0.95639 1.02045 0.97756 1.69665 1.03620 1.34364 1.48807 0.85059 0.77182 0.77814 0.78730 1.19992 1.19855 1.19649 1.22259 0.94122 0.98385 0.92379 0.92808 0.88748 0.92197 0.90242 0.92837 0.93030 0.89349 0.89426 0.87741 0.74736 0.92308 0.89743 0.91934 0.89239 0.92328 0.89967 0.92710 0.91758 0.86655 0.77272 0.91538 0.92419 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.56 71.98 0.69 -1.62 16 2 C 0.07 1.31 3.34 30.59 0.10 1.41 16 3 C -0.18 -3.12 9.53 71.98 0.69 -2.43 16 4 O -0.39 -10.55 9.52 -129.94 -1.24 -11.79 16 5 C 0.05 1.13 6.23 71.24 0.44 1.57 16 6 C 0.51 15.62 7.87 87.66 0.69 16.31 16 7 O -0.58 -22.08 16.16 16.03 0.26 -21.82 16 8 N -0.70 -19.74 4.41 -442.28 -1.95 -21.69 16 9 C 0.16 4.23 2.81 45.05 0.13 4.35 16 10 H 0.07 2.18 7.58 -2.39 -0.02 2.16 16 11 C -0.12 -2.70 5.67 30.67 0.17 -2.52 16 12 C -0.10 -1.90 5.20 30.65 0.16 -1.74 16 13 C 0.08 1.63 2.44 44.94 0.11 1.74 16 14 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 15 C -0.15 -2.70 8.59 71.98 0.62 -2.08 16 16 N -0.52 -14.33 3.53 -875.66 -3.09 -17.42 16 17 C 0.05 1.61 5.31 85.56 0.45 2.06 16 18 C 0.45 19.62 7.49 87.66 0.66 20.27 16 19 O -0.61 -30.42 14.74 -3.09 -0.05 -30.47 16 20 N -0.58 -28.40 5.29 -306.98 -1.62 -30.03 16 21 C -0.33 -17.88 9.68 84.04 0.81 -17.06 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 25 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 29 C 0.06 1.63 4.70 86.33 0.41 2.04 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.20 7.79 -2.39 -0.02 1.18 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.98 7.87 -2.39 -0.02 0.96 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 2.00 7.87 -2.38 -0.02 1.98 16 38 H 0.10 1.94 8.09 -2.38 -0.02 1.92 16 39 H 0.42 12.01 8.17 -92.70 -0.76 11.25 16 40 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.31 7.73 -2.39 -0.02 1.30 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.08 6.38 -2.39 -0.02 1.07 16 45 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 46 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.84 8.00 -2.39 -0.02 1.82 16 48 H 0.12 3.17 5.42 -2.39 -0.01 3.16 16 49 H 0.39 18.52 7.90 -92.71 -0.73 17.79 16 50 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 51 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 52 H 0.06 2.19 6.69 -2.39 -0.02 2.17 16 Total: -1.00 -70.17 414.14 0.65 -69.52 By element: Atomic # 1 Polarization: 46.71 SS G_CDS: -0.57 Total: 46.14 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 6.60 Total: 22.00 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.38 Total: -117.96 kcal Atomic # 8 Polarization: -63.05 SS G_CDS: -1.02 Total: -64.08 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -70.17 0.65 -69.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131890834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.666 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds