Wall clock time and date at job start Wed Apr 1 2020 00:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46553 * 2 1 4 4 O 1.42899 * 109.47135 * 119.99424 * 2 1 3 5 5 C 1.42896 * 113.99935 * 149.99937 * 4 2 1 6 6 C 1.50709 * 109.47019 * 180.02562 * 5 4 2 7 7 O 1.21275 * 119.99770 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99562 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99571 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.50783 * 35.07678 * 9 8 6 11 11 C 1.53120 * 109.50149 * 274.99841 * 9 8 6 12 12 C 1.53121 * 109.16264 * 297.71422 * 11 9 8 13 13 C 1.53046 * 109.27812 * 302.34806 * 12 11 9 14 14 H 1.09002 * 109.45465 * 299.16073 * 13 12 11 15 15 C 1.52991 * 109.46317 * 179.19221 * 13 12 11 16 16 N 1.46845 * 109.51969 * 59.17606 * 13 12 11 17 17 C 1.46906 * 110.99692 * 174.16665 * 16 13 12 18 18 C 1.50699 * 109.47177 * 64.61438 * 17 16 13 19 19 O 1.21283 * 120.00227 * 354.34013 * 18 17 16 20 20 N 1.34780 * 119.99835 * 174.33771 * 18 17 16 21 21 C 1.37090 * 120.00059 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00076 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00174 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99734 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99995 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47139 * 269.99954 * 25 23 21 27 27 H 1.48493 * 109.47436 * 30.00475 * 25 23 21 28 28 H 1.48501 * 109.46940 * 150.00353 * 25 23 21 29 29 C 1.46845 * 111.20064 * 298.25485 * 16 13 12 30 30 H 1.08995 * 109.47548 * 299.99997 * 1 2 3 31 31 H 1.09003 * 109.47034 * 60.00365 * 1 2 3 32 32 H 1.09008 * 109.46443 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47548 * 240.00003 * 2 1 3 34 34 H 1.09005 * 109.46539 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47152 * 299.99563 * 3 2 1 36 36 H 1.08995 * 109.47191 * 59.99784 * 3 2 1 37 37 H 1.08999 * 109.46699 * 60.00683 * 5 4 2 38 38 H 1.08997 * 109.47571 * 300.00427 * 5 4 2 39 39 H 0.96994 * 120.00798 * 359.97438 * 8 6 5 40 40 H 1.08998 * 109.52496 * 177.81196 * 11 9 8 41 41 H 1.08999 * 109.52664 * 57.61775 * 11 9 8 42 42 H 1.08995 * 109.50934 * 182.40455 * 12 11 9 43 43 H 1.09003 * 109.53464 * 62.30108 * 12 11 9 44 44 H 1.08996 * 109.47567 * 293.10216 * 15 13 12 45 45 H 1.09004 * 109.47477 * 53.09877 * 15 13 12 46 46 H 1.08993 * 109.47367 * 173.09745 * 15 13 12 47 47 H 1.09008 * 109.46683 * 304.62147 * 17 16 13 48 48 H 1.08990 * 109.47384 * 184.62079 * 17 16 13 49 49 H 0.97006 * 119.99842 * 359.97438 * 20 18 17 50 50 H 0.97001 * 120.00422 * 359.97438 * 24 23 21 51 51 H 1.09005 * 109.46394 * 181.76060 * 29 16 13 52 52 H 1.09004 * 109.46500 * 301.73525 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6693 -1.9986 2.2748 7 8 2.9488 -1.9290 3.2478 8 7 4.8307 -2.6789 2.3435 9 6 5.2226 -3.3348 3.5935 10 1 4.3350 -3.7170 4.0977 11 6 5.9307 -2.3248 4.5006 12 6 7.2073 -1.8374 3.8098 13 6 8.1023 -3.0386 3.4962 14 1 8.3734 -3.5415 4.4245 15 6 9.3703 -2.5584 2.7876 16 7 7.3798 -3.9747 2.6255 17 6 8.2549 -5.0720 2.1913 18 6 8.6644 -5.8914 3.3879 19 8 8.3521 -5.5333 4.5038 20 7 9.3777 -7.0223 3.2180 21 6 9.7498 -7.7680 4.3064 22 1 9.4718 -7.4491 5.3001 23 6 10.4848 -8.9342 4.1313 24 7 10.8235 -9.3220 2.9222 25 14 10.9924 -9.9499 5.6144 26 1 12.3151 -9.4848 6.1037 27 1 9.9827 -9.7920 6.6917 28 1 11.0832 -11.3806 5.2270 29 6 6.1751 -4.4926 3.2863 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 4.0200 -0.5872 0.7126 38 1 3.1810 -2.0706 0.1988 39 1 5.4069 -2.7349 1.5652 40 1 6.1878 -2.8021 5.4462 41 1 5.2711 -1.4773 4.6868 42 1 7.7381 -1.1503 4.4686 43 1 6.9476 -1.3255 2.8831 44 1 9.1106 -2.1653 1.8047 45 1 9.8425 -1.7742 3.3793 46 1 10.0614 -3.3935 2.6738 47 1 9.1430 -4.6603 1.7117 48 1 7.7200 -5.7049 1.4833 49 1 9.6271 -7.3089 2.3254 50 1 10.5602 -8.7944 2.1520 51 1 5.6787 -5.2065 2.6289 52 1 6.4553 -4.9887 4.2155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131890835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:01 Heat of formation + Delta-G solvation = -120.749969 kcal Electronic energy + Delta-G solvation = -31053.724507 eV Core-core repulsion = 26860.100226 eV Total energy + Delta-G solvation = -4193.624281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.40625 -39.43024 -38.30747 -37.39402 -34.86456 -34.16867 -33.09909 -32.56543 -31.38578 -31.17344 -28.16190 -27.61226 -27.41467 -26.07570 -24.42224 -22.85890 -21.69728 -21.52113 -20.80540 -19.77623 -19.05284 -17.95673 -17.43264 -17.23596 -16.44491 -16.14543 -15.73031 -15.54981 -15.16924 -14.81269 -14.65331 -14.51416 -14.35419 -13.91632 -13.76407 -13.62737 -13.41589 -13.11911 -13.02606 -12.73694 -12.62332 -12.52971 -12.28431 -12.01337 -11.82284 -11.79888 -11.74877 -11.44119 -11.30765 -11.22581 -11.07031 -10.97375 -10.58102 -10.42604 -10.28032 -10.01247 -9.96710 -9.94588 -9.75551 -9.54626 -9.35190 -8.95651 -8.12169 -7.55506 -6.84693 -3.98189 2.61120 2.73186 3.22914 3.29640 3.48409 3.70989 3.78542 4.14899 4.19204 4.49167 4.63468 4.71159 4.76679 4.82124 4.86650 4.92226 4.96941 5.00691 5.11676 5.16907 5.23519 5.26707 5.34993 5.43766 5.48352 5.52561 5.65801 5.68474 5.71113 5.81790 5.82455 5.86128 5.88471 5.90625 5.98849 6.03492 6.11177 6.18348 6.26377 6.32329 6.37858 6.58516 6.72839 6.84135 7.20186 7.34462 7.59881 7.70087 7.99175 8.26598 8.48460 8.69167 9.37194 9.75207 10.58250 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002110 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.550829 B =13266.015780 C =13493.133528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.357 6.357 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.527 6.527 8 N -0.710 5.710 9 C 0.157 3.843 10 H 0.088 0.912 11 C -0.130 4.130 12 C -0.103 4.103 13 C 0.061 3.939 14 H 0.085 0.915 15 C -0.143 4.143 16 N -0.509 5.509 17 C 0.037 3.963 18 C 0.409 3.591 19 O -0.587 6.587 20 N -0.568 5.568 21 C -0.384 4.384 22 H 0.099 0.901 23 C -0.008 4.008 24 N -0.897 5.897 25 Si 1.092 2.908 26 H -0.284 1.284 27 H -0.283 1.283 28 H -0.280 1.280 29 C 0.031 3.969 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.407 0.593 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.376 0.624 50 H 0.262 0.738 51 H 0.070 0.930 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.811 17.327 -9.674 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.295 3.705 7 O -0.403 6.403 8 N -0.363 5.363 9 C 0.052 3.948 10 H 0.106 0.894 11 C -0.169 4.169 12 C -0.141 4.141 13 C -0.047 4.047 14 H 0.103 0.897 15 C -0.201 4.201 16 N -0.233 5.233 17 C -0.095 4.095 18 C 0.195 3.805 19 O -0.474 6.474 20 N -0.204 5.204 21 C -0.514 4.514 22 H 0.117 0.883 23 C -0.211 4.211 24 N -0.536 5.536 25 Si 0.918 3.082 26 H -0.211 1.211 27 H -0.209 1.209 28 H -0.206 1.206 29 C -0.098 4.098 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.242 0.758 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.104 0.896 49 H 0.209 0.791 50 H 0.073 0.927 51 H 0.089 0.911 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.987 16.480 -7.984 21.887 hybrid contribution 0.160 0.745 -1.077 1.320 sum -11.826 17.226 -9.061 22.775 Atomic orbital electron populations 1.21852 0.93328 1.02915 1.02570 1.22169 0.95331 0.92494 0.87956 1.22315 1.01552 0.96759 1.02736 1.88071 1.34729 1.69683 1.35101 1.22245 0.88046 0.97063 0.96242 1.20223 0.81494 0.79283 0.89527 1.90717 1.52189 1.59694 1.37668 1.45921 1.21246 1.53540 1.15616 1.21009 0.97073 0.92299 0.84378 0.89430 1.21935 0.96905 0.99236 0.98827 1.21542 0.95450 0.97053 1.00081 1.21902 0.92778 0.92659 0.97351 0.89679 1.21856 0.96975 1.00847 1.00425 1.62433 1.06081 1.14435 1.40339 1.22112 0.98155 0.92789 0.96405 1.20998 0.84495 0.83890 0.91140 1.90408 1.59661 1.71266 1.26024 1.42141 1.47675 1.21561 1.09058 1.20577 1.35218 1.06435 0.89130 0.88306 1.26529 0.94955 0.96148 1.03451 1.70878 1.44322 1.40155 0.98219 0.83105 0.76494 0.75783 0.72792 1.21063 1.20921 1.20567 1.22604 0.90243 0.95370 1.01547 0.91613 0.91192 0.91869 0.92067 0.92465 0.91561 0.91594 0.90527 0.90441 0.75777 0.90864 0.91760 0.92031 0.92023 0.92502 0.92649 0.92721 0.88832 0.89638 0.79118 0.92653 0.91113 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.56 37.16 0.36 -0.70 16 2 C 0.08 0.62 3.34 -26.73 -0.09 0.53 16 3 C -0.18 -1.20 9.53 37.16 0.35 -0.84 16 4 O -0.36 -4.15 9.52 -55.14 -0.52 -4.67 16 5 C 0.04 0.42 6.23 36.01 0.22 0.65 16 6 C 0.51 6.61 7.87 -10.98 -0.09 6.52 16 7 O -0.53 -9.22 16.16 -14.35 -0.23 -9.45 16 8 N -0.71 -8.23 4.41 -53.73 -0.24 -8.47 16 9 C 0.16 2.15 2.81 -67.85 -0.19 1.96 16 10 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 11 C -0.13 -1.79 5.67 -26.61 -0.15 -1.94 16 12 C -0.10 -1.32 5.20 -26.64 -0.14 -1.46 16 13 C 0.06 0.90 2.05 -67.72 -0.14 0.76 16 14 H 0.09 1.61 5.69 -51.93 -0.30 1.32 16 15 C -0.14 -1.89 8.52 37.15 0.32 -1.57 16 16 N -0.51 -7.28 4.17 -228.12 -0.95 -8.24 16 17 C 0.04 0.59 5.45 -4.97 -0.03 0.56 16 18 C 0.41 8.77 7.18 -10.98 -0.08 8.69 16 19 O -0.59 -14.27 11.22 5.55 0.06 -14.21 16 20 N -0.57 -13.48 5.28 -10.96 -0.06 -13.53 16 21 C -0.38 -10.38 9.68 -14.94 -0.14 -10.52 16 22 H 0.10 2.85 7.16 -52.48 -0.38 2.47 16 23 C -0.01 -0.20 5.50 -17.47 -0.10 -0.30 16 24 N -0.90 -24.45 13.68 55.50 0.76 -23.69 16 25 Si 1.09 23.81 29.92 -169.99 -5.09 18.73 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 29 C 0.03 0.46 4.59 -3.83 -0.02 0.44 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 34 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.41 4.01 8.17 -40.82 -0.33 3.67 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.73 7.73 -51.93 -0.40 0.33 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.80 6.65 -51.93 -0.35 0.45 16 47 H 0.09 1.36 6.10 -51.92 -0.32 1.04 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.38 8.29 6.73 -40.82 -0.27 8.02 16 50 H 0.26 6.84 6.78 -40.82 -0.28 6.56 16 51 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 52 H 0.09 1.71 5.68 -51.93 -0.29 1.41 16 LS Contribution 406.42 15.07 6.12 6.12 Total: -1.00 -32.74 406.42 -8.87 -41.61 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -8.82 Total: 13.02 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.09 Total: 2.78 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.49 Total: -53.93 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.69 Total: -28.33 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.09 Total: 18.73 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.74 -8.87 -41.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131890835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.138 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds