Wall clock time and date at job start Wed Apr 1 2020 00:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46553 * 2 1 4 4 O 1.42899 * 109.47135 * 119.99424 * 2 1 3 5 5 C 1.42896 * 113.99935 * 149.99937 * 4 2 1 6 6 C 1.50709 * 109.47019 * 180.02562 * 5 4 2 7 7 O 1.21275 * 119.99770 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99562 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99571 * 180.02562 * 8 6 5 10 10 H 1.08993 * 109.50783 * 35.07678 * 9 8 6 11 11 C 1.53120 * 109.50149 * 274.99841 * 9 8 6 12 12 C 1.53121 * 109.16264 * 297.71422 * 11 9 8 13 13 C 1.53046 * 109.27812 * 302.34806 * 12 11 9 14 14 H 1.09002 * 109.45465 * 299.16073 * 13 12 11 15 15 C 1.52991 * 109.46317 * 179.19221 * 13 12 11 16 16 N 1.46845 * 109.51969 * 59.17606 * 13 12 11 17 17 C 1.46906 * 110.99692 * 174.16665 * 16 13 12 18 18 C 1.50699 * 109.47177 * 64.61438 * 17 16 13 19 19 O 1.21283 * 120.00227 * 354.34013 * 18 17 16 20 20 N 1.34780 * 119.99835 * 174.33771 * 18 17 16 21 21 C 1.37090 * 120.00059 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00076 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00174 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99734 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99995 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47139 * 269.99954 * 25 23 21 27 27 H 1.48493 * 109.47436 * 30.00475 * 25 23 21 28 28 H 1.48501 * 109.46940 * 150.00353 * 25 23 21 29 29 C 1.46845 * 111.20064 * 298.25485 * 16 13 12 30 30 H 1.08995 * 109.47548 * 299.99997 * 1 2 3 31 31 H 1.09003 * 109.47034 * 60.00365 * 1 2 3 32 32 H 1.09008 * 109.46443 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47548 * 240.00003 * 2 1 3 34 34 H 1.09005 * 109.46539 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47152 * 299.99563 * 3 2 1 36 36 H 1.08995 * 109.47191 * 59.99784 * 3 2 1 37 37 H 1.08999 * 109.46699 * 60.00683 * 5 4 2 38 38 H 1.08997 * 109.47571 * 300.00427 * 5 4 2 39 39 H 0.96994 * 120.00798 * 359.97438 * 8 6 5 40 40 H 1.08998 * 109.52496 * 177.81196 * 11 9 8 41 41 H 1.08999 * 109.52664 * 57.61775 * 11 9 8 42 42 H 1.08995 * 109.50934 * 182.40455 * 12 11 9 43 43 H 1.09003 * 109.53464 * 62.30108 * 12 11 9 44 44 H 1.08996 * 109.47567 * 293.10216 * 15 13 12 45 45 H 1.09004 * 109.47477 * 53.09877 * 15 13 12 46 46 H 1.08993 * 109.47367 * 173.09745 * 15 13 12 47 47 H 1.09008 * 109.46683 * 304.62147 * 17 16 13 48 48 H 1.08990 * 109.47384 * 184.62079 * 17 16 13 49 49 H 0.97006 * 119.99842 * 359.97438 * 20 18 17 50 50 H 0.97001 * 120.00422 * 359.97438 * 24 23 21 51 51 H 1.09005 * 109.46394 * 181.76060 * 29 16 13 52 52 H 1.09004 * 109.46500 * 301.73525 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6693 -1.9986 2.2748 7 8 2.9488 -1.9290 3.2478 8 7 4.8307 -2.6789 2.3435 9 6 5.2226 -3.3348 3.5935 10 1 4.3350 -3.7170 4.0977 11 6 5.9307 -2.3248 4.5006 12 6 7.2073 -1.8374 3.8098 13 6 8.1023 -3.0386 3.4962 14 1 8.3734 -3.5415 4.4245 15 6 9.3703 -2.5584 2.7876 16 7 7.3798 -3.9747 2.6255 17 6 8.2549 -5.0720 2.1913 18 6 8.6644 -5.8914 3.3879 19 8 8.3521 -5.5333 4.5038 20 7 9.3777 -7.0223 3.2180 21 6 9.7498 -7.7680 4.3064 22 1 9.4718 -7.4491 5.3001 23 6 10.4848 -8.9342 4.1313 24 7 10.8235 -9.3220 2.9222 25 14 10.9924 -9.9499 5.6144 26 1 12.3151 -9.4848 6.1037 27 1 9.9827 -9.7920 6.6917 28 1 11.0832 -11.3806 5.2270 29 6 6.1751 -4.4926 3.2863 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8935 -0.5138 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 4.0200 -0.5872 0.7126 38 1 3.1810 -2.0706 0.1988 39 1 5.4069 -2.7349 1.5652 40 1 6.1878 -2.8021 5.4462 41 1 5.2711 -1.4773 4.6868 42 1 7.7381 -1.1503 4.4686 43 1 6.9476 -1.3255 2.8831 44 1 9.1106 -2.1653 1.8047 45 1 9.8425 -1.7742 3.3793 46 1 10.0614 -3.3935 2.6738 47 1 9.1430 -4.6603 1.7117 48 1 7.7200 -5.7049 1.4833 49 1 9.6271 -7.3089 2.3254 50 1 10.5602 -8.7944 2.1520 51 1 5.6787 -5.2065 2.6289 52 1 6.4553 -4.9887 4.2155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131890835.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:00 Heat of formation + Delta-G solvation = -144.200274 kcal Electronic energy + Delta-G solvation = -31054.741389 eV Core-core repulsion = 26860.100226 eV Total energy + Delta-G solvation = -4194.641163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.64930 -40.66399 -39.36074 -38.65815 -36.48627 -35.65270 -33.88796 -33.67597 -33.11663 -32.44528 -29.12652 -28.83984 -28.04746 -27.21533 -26.21638 -24.16424 -22.73631 -22.22508 -21.98361 -21.33368 -20.36628 -19.86566 -18.43232 -18.09918 -17.86628 -17.11064 -16.96702 -16.75694 -16.37949 -16.27738 -15.81191 -15.64925 -15.54444 -15.40675 -15.27957 -14.61538 -14.55849 -14.32483 -13.85978 -13.82726 -13.47673 -13.42890 -13.28855 -13.06494 -13.02862 -12.88395 -12.86867 -12.85914 -12.61848 -12.35129 -12.30552 -11.98376 -11.94088 -11.76149 -11.67221 -11.62063 -11.35461 -11.17889 -11.01110 -10.81194 -10.61217 -10.08188 -10.05580 -9.07665 -8.92301 -6.06767 1.48788 1.52168 1.62171 1.78288 1.86399 1.99078 2.39883 2.83766 3.08176 3.08398 3.15948 3.68782 3.78792 3.82955 3.98208 4.03110 4.04894 4.12762 4.22091 4.23802 4.30957 4.35562 4.36040 4.43118 4.53135 4.55954 4.64283 4.72231 4.76755 4.82417 4.86751 4.89277 4.93132 4.95078 4.95869 5.01732 5.07957 5.16179 5.22841 5.30512 5.34915 5.43225 5.54765 5.61346 5.91652 5.96886 6.06755 6.20684 6.56125 6.66945 6.75232 7.30444 7.44406 7.92772 8.54530 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022421 B = 0.002110 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.550829 B =13266.015780 C =13493.133528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 C -0.174 4.174 4 O -0.394 6.394 5 C 0.048 3.952 6 C 0.507 3.493 7 O -0.580 6.580 8 N -0.694 5.694 9 C 0.166 3.834 10 H 0.069 0.931 11 C -0.127 4.127 12 C -0.093 4.093 13 C 0.060 3.940 14 H 0.039 0.961 15 C -0.138 4.138 16 N -0.485 5.485 17 C 0.046 3.954 18 C 0.412 3.588 19 O -0.616 6.616 20 N -0.584 5.584 21 C -0.406 4.406 22 H 0.070 0.930 23 C -0.042 4.042 24 N -0.916 5.916 25 Si 1.132 2.868 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.273 1.273 29 C 0.038 3.962 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.420 0.580 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.384 0.616 50 H 0.261 0.739 51 H 0.080 0.920 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 18.885 -12.472 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.314 6.314 5 C -0.031 4.031 6 C 0.294 3.706 7 O -0.459 6.459 8 N -0.348 5.348 9 C 0.060 3.940 10 H 0.087 0.913 11 C -0.166 4.166 12 C -0.131 4.131 13 C -0.048 4.048 14 H 0.057 0.943 15 C -0.195 4.195 16 N -0.208 5.208 17 C -0.086 4.086 18 C 0.200 3.800 19 O -0.503 6.503 20 N -0.223 5.223 21 C -0.536 4.536 22 H 0.088 0.912 23 C -0.241 4.241 24 N -0.555 5.555 25 Si 0.952 3.048 26 H -0.197 1.197 27 H -0.206 1.206 28 H -0.198 1.198 29 C -0.090 4.090 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.258 0.742 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.056 0.944 47 H 0.136 0.864 48 H 0.130 0.870 49 H 0.218 0.782 50 H 0.072 0.928 51 H 0.099 0.901 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.847 18.064 -10.833 24.167 hybrid contribution 0.026 0.373 -0.188 0.418 sum -11.821 18.437 -11.021 24.518 Atomic orbital electron populations 1.21894 0.93265 1.02571 1.03019 1.22414 0.95518 0.93004 0.87623 1.22303 1.01796 0.96095 1.02918 1.88037 1.35648 1.70357 1.37332 1.22331 0.88261 0.98206 0.94326 1.20948 0.80779 0.78566 0.90262 1.90700 1.53718 1.61632 1.39851 1.45720 1.21269 1.52768 1.15053 1.20699 0.95944 0.91981 0.85373 0.91259 1.21873 0.97548 0.98903 0.98259 1.21482 0.94264 0.96276 1.01065 1.21875 0.94250 0.93004 0.95659 0.94302 1.21818 0.95412 1.00536 1.01781 1.62537 1.05330 1.13418 1.39493 1.22251 0.99633 0.92568 0.94112 1.22215 0.82181 0.83061 0.92535 1.90436 1.59921 1.71719 1.28200 1.42195 1.49058 1.22391 1.08641 1.20477 1.36421 1.07627 0.89095 0.91219 1.27693 0.94508 0.96765 1.05100 1.70939 1.45394 1.40637 0.98573 0.82623 0.76800 0.74910 0.70420 1.19694 1.20598 1.19801 1.22442 0.90885 0.95904 0.99790 0.93098 0.88810 0.92603 0.89817 0.92030 0.89585 0.93211 0.87658 0.87550 0.74196 0.92806 0.91993 0.91107 0.89855 0.89827 0.91589 0.94436 0.86405 0.87010 0.78196 0.92817 0.90143 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.56 71.98 0.69 -1.22 16 2 C 0.07 0.96 3.34 30.60 0.10 1.06 16 3 C -0.17 -1.93 9.53 71.98 0.69 -1.25 16 4 O -0.39 -8.50 9.52 -129.94 -1.24 -9.74 16 5 C 0.05 0.77 6.23 71.24 0.44 1.22 16 6 C 0.51 12.38 7.87 87.66 0.69 13.07 16 7 O -0.58 -20.40 16.16 16.02 0.26 -20.14 16 8 N -0.69 -14.70 4.41 -442.28 -1.95 -16.65 16 9 C 0.17 4.51 2.81 45.04 0.13 4.64 16 10 H 0.07 2.17 7.58 -2.39 -0.02 2.15 16 11 C -0.13 -3.50 5.67 30.67 0.17 -3.32 16 12 C -0.09 -2.21 5.20 30.65 0.16 -2.05 16 13 C 0.06 1.71 2.05 44.94 0.09 1.80 16 14 H 0.04 1.51 5.69 -2.39 -0.01 1.49 16 15 C -0.14 -3.27 8.52 71.98 0.61 -2.66 16 16 N -0.48 -12.99 4.17 -875.63 -3.65 -16.64 16 17 C 0.05 1.36 5.45 85.56 0.47 1.83 16 18 C 0.41 17.84 7.18 87.66 0.63 18.47 16 19 O -0.62 -31.05 11.22 -3.04 -0.03 -31.08 16 20 N -0.58 -28.13 5.28 -306.99 -1.62 -29.75 16 21 C -0.41 -22.58 9.68 84.04 0.81 -21.77 16 22 H 0.07 4.21 7.16 -2.91 -0.02 4.19 16 23 C -0.04 -2.24 5.50 84.93 0.47 -1.77 16 24 N -0.92 -50.06 13.68 21.66 0.30 -49.77 16 25 Si 1.13 48.29 29.92 68.60 2.05 50.34 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 C 0.04 1.15 4.59 86.33 0.40 1.55 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.08 0.74 7.79 -2.39 -0.02 0.72 16 34 H 0.06 0.62 7.87 -2.38 -0.02 0.60 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 1.10 7.87 -2.39 -0.02 1.08 16 38 H 0.11 1.11 8.08 -2.39 -0.02 1.09 16 39 H 0.42 6.75 8.17 -92.71 -0.76 5.99 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 1.66 7.73 -2.39 -0.02 1.65 16 44 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.04 1.01 6.65 -2.39 -0.02 1.00 16 47 H 0.12 3.05 6.10 -2.38 -0.01 3.04 16 48 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 49 H 0.38 16.99 6.73 -92.70 -0.62 16.36 16 50 H 0.26 13.68 6.78 -92.71 -0.63 13.05 16 51 H 0.08 2.24 8.12 -2.38 -0.02 2.22 16 52 H 0.05 1.93 5.68 -2.39 -0.01 1.91 16 Total: -1.00 -75.22 406.42 0.35 -74.87 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -0.31 Total: 38.96 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.55 Total: 9.59 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -6.93 Total: -112.80 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -1.01 Total: -60.96 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.05 Total: 50.34 kcal Total: -75.22 0.35 -74.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131890835.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.332 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds