Wall clock time and date at job start Wed Apr 1 2020 00:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.45284 * 2 1 4 4 C 1.53034 * 109.46274 * 240.03028 * 2 1 3 5 5 C 1.53119 * 109.27922 * 180.80406 * 4 2 1 6 6 C 1.53117 * 109.15831 * 57.65427 * 5 4 2 7 7 H 1.09004 * 109.50546 * 182.36330 * 6 5 4 8 8 N 1.46500 * 109.50551 * 62.28458 * 6 5 4 9 9 C 1.34786 * 119.99679 * 85.00224 * 8 6 5 10 10 O 1.21280 * 119.99884 * 359.97438 * 9 8 6 11 11 C 1.50697 * 119.99574 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46907 * 186.92313 * 11 9 8 13 13 C 1.52995 * 109.47181 * 179.24217 * 12 11 9 14 14 C 1.52999 * 109.46820 * 59.24272 * 12 11 9 15 15 O 1.42904 * 109.47242 * 299.24397 * 12 11 9 16 16 C 1.53041 * 109.28022 * 302.34220 * 6 5 4 17 17 N 1.46841 * 109.46175 * 119.97510 * 2 1 3 18 18 C 1.46905 * 111.00345 * 305.85400 * 17 2 1 19 19 C 1.50697 * 109.46963 * 294.25956 * 18 17 2 20 20 O 1.21296 * 120.00475 * 6.28341 * 19 18 17 21 21 N 1.34779 * 119.99834 * 186.29377 * 19 18 17 22 22 C 1.37102 * 119.99871 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00227 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99622 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99781 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47022 * 59.99672 * 26 24 22 28 28 H 1.48491 * 109.47115 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47142 * 300.00125 * 26 24 22 30 30 H 1.08993 * 109.47000 * 187.19880 * 1 2 3 31 31 H 1.08999 * 109.46897 * 307.19542 * 1 2 3 32 32 H 1.09005 * 109.47133 * 67.19300 * 1 2 3 33 33 H 1.09000 * 109.50284 * 60.85871 * 4 2 1 34 34 H 1.09005 * 109.53550 * 300.76592 * 4 2 1 35 35 H 1.08995 * 109.52087 * 297.74876 * 5 4 2 36 36 H 1.09006 * 109.57503 * 177.58667 * 5 4 2 37 37 H 0.96992 * 120.00428 * 264.99689 * 8 6 5 38 38 H 1.09000 * 109.47414 * 66.92898 * 11 9 8 39 39 H 1.08996 * 109.47562 * 306.92205 * 11 9 8 40 40 H 1.09006 * 109.47517 * 175.39527 * 13 12 11 41 41 H 1.09003 * 109.47146 * 295.39580 * 13 12 11 42 42 H 1.08996 * 109.47275 * 55.39440 * 13 12 11 43 43 H 1.08993 * 109.47401 * 299.99874 * 14 12 11 44 44 H 1.09000 * 109.47393 * 60.00188 * 14 12 11 45 45 H 1.09003 * 109.46936 * 179.97438 * 14 12 11 46 46 H 0.96703 * 113.99882 * 59.99873 * 15 12 11 47 47 H 1.09000 * 109.46325 * 179.19358 * 16 6 5 48 48 H 1.08996 * 109.45975 * 299.17110 * 16 6 5 49 49 H 1.09001 * 109.46628 * 54.25413 * 18 17 2 50 50 H 1.08991 * 109.47139 * 174.25227 * 18 17 2 51 51 H 0.96999 * 119.99860 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99510 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2356 6 6 4.0548 -1.4187 0.0466 7 1 5.1440 -1.3953 0.0828 8 7 3.5947 -2.8095 0.0637 9 6 4.3120 -3.7643 -0.5611 10 8 5.3381 -3.4720 -1.1379 11 6 3.8384 -5.1948 -0.5440 12 6 4.9079 -6.0936 -1.1681 13 6 4.4352 -7.5483 -1.1336 14 6 6.2103 -5.9617 -0.3762 15 8 5.1319 -5.6975 -2.5227 16 6 3.4865 -0.6777 1.2591 17 7 2.0193 -0.6917 1.1993 18 6 1.4373 -0.1106 2.4166 19 6 1.9311 1.3033 2.5838 20 8 2.6001 1.8191 1.7134 21 7 1.6296 1.9947 3.7008 22 6 2.0784 3.2813 3.8527 23 1 2.6739 3.7405 3.0776 24 6 1.7671 3.9942 5.0041 25 7 1.0421 3.4355 5.9470 26 14 2.3791 5.7469 5.2114 27 1 1.8462 6.5906 4.1117 28 1 1.9138 6.2826 6.5158 29 1 3.8636 5.7608 5.1712 30 1 -0.3633 -1.0195 0.1288 31 1 -0.3633 0.6213 0.8186 32 1 -0.3634 0.3984 -0.9474 33 1 1.6894 -0.1980 -2.1399 34 1 1.6659 -1.7446 -1.2584 35 1 3.9456 0.2871 -1.2672 36 1 3.9389 -1.2856 -2.1021 37 1 2.7740 -3.0432 0.5248 38 1 2.9145 -5.2786 -1.1162 39 1 3.6580 -5.5056 0.4850 40 1 5.1592 -8.1780 -1.6507 41 1 4.3429 -7.8759 -0.0980 42 1 3.4667 -7.6274 -1.6273 43 1 6.5471 -4.9254 -0.4007 44 1 6.0396 -6.2638 0.6571 45 1 6.9722 -6.6023 -0.8205 46 1 5.4341 -4.7841 -2.6206 47 1 3.8175 -1.1699 2.1736 48 1 3.8403 0.3533 1.2531 49 1 0.3504 -0.1085 2.3343 50 1 1.7352 -0.7042 3.2808 51 1 1.0945 1.5823 4.3968 52 1 0.8251 3.9331 6.7509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132009608.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:23 Heat of formation + Delta-G solvation = -132.054398 kcal Electronic energy + Delta-G solvation = -31617.958003 eV Core-core repulsion = 27423.843525 eV Total energy + Delta-G solvation = -4194.114478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.62807 -39.62488 -37.92151 -37.02150 -34.74860 -33.94836 -32.92942 -32.48620 -31.40128 -31.27147 -28.49466 -27.62629 -27.47353 -26.21583 -24.64034 -22.83139 -21.81522 -20.93692 -20.28800 -19.52822 -18.96239 -17.87248 -17.36803 -16.84444 -16.16542 -15.78470 -15.67167 -15.36493 -15.09185 -14.79215 -14.67009 -14.46449 -14.25288 -13.91179 -13.72364 -13.53723 -13.12300 -12.86988 -12.75645 -12.59222 -12.41209 -12.38293 -12.03079 -11.95275 -11.80431 -11.76250 -11.65675 -11.56516 -11.38940 -11.25324 -11.11047 -11.00364 -10.57072 -10.50077 -10.40077 -10.31492 -10.09643 -9.97750 -9.75283 -9.51990 -9.32215 -8.97830 -8.07177 -7.51544 -6.52279 -3.93797 2.52647 3.11271 3.17079 3.19000 3.22880 3.74797 4.08615 4.12949 4.19311 4.44065 4.62374 4.79147 4.83354 4.97428 5.00415 5.07961 5.12232 5.17403 5.19589 5.29255 5.32549 5.40828 5.53898 5.59751 5.68595 5.72812 5.73390 5.76172 5.77915 5.86050 5.95308 5.97543 6.00147 6.02337 6.11797 6.14661 6.15639 6.23671 6.31012 6.34752 6.42384 6.59714 6.75944 7.25592 7.39110 7.44392 7.54432 7.69201 7.93653 8.21917 8.48069 9.05896 9.41702 9.91786 10.64032 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002314 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.185547 B =12099.882225 C =12408.772595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.104 4.104 5 C -0.129 4.129 6 C 0.153 3.847 7 H 0.087 0.913 8 N -0.705 5.705 9 C 0.515 3.485 10 O -0.553 6.553 11 C -0.172 4.172 12 C 0.146 3.854 13 C -0.140 4.140 14 C -0.189 4.189 15 O -0.569 6.569 16 C 0.029 3.971 17 N -0.509 5.509 18 C 0.037 3.963 19 C 0.406 3.594 20 O -0.594 6.594 21 N -0.555 5.555 22 C -0.303 4.303 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.273 1.273 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.408 0.592 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.388 0.612 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -17.458 -9.430 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.046 4.046 3 H 0.102 0.898 4 C -0.142 4.142 5 C -0.168 4.168 6 C 0.048 3.952 7 H 0.105 0.895 8 N -0.355 5.355 9 C 0.302 3.698 10 O -0.434 6.434 11 C -0.213 4.213 12 C 0.105 3.895 13 C -0.197 4.197 14 C -0.246 4.246 15 O -0.381 6.381 16 C -0.099 4.099 17 N -0.233 5.233 18 C -0.095 4.095 19 C 0.191 3.809 20 O -0.482 6.482 21 N -0.190 5.190 22 C -0.433 4.433 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.538 5.538 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.241 0.759 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.819 -17.890 -10.341 20.743 hybrid contribution -0.175 2.014 1.250 2.377 sum 1.644 -15.875 -9.091 18.368 Atomic orbital electron populations 1.21867 0.95230 1.01557 1.01513 1.21868 0.94566 0.98972 0.89148 0.89832 1.21542 0.95011 1.00557 0.97061 1.21917 0.96411 1.01010 0.97418 1.21052 0.98932 0.79920 0.95278 0.89499 1.46092 1.27302 1.07695 1.54453 1.20628 0.83657 0.87413 0.78109 1.90507 1.24949 1.82984 1.44975 1.22500 1.01831 0.92733 1.04203 1.20792 0.92689 0.93316 0.82698 1.21775 1.01951 0.93833 1.02142 1.22670 0.97683 1.04566 0.99674 1.86388 1.89800 1.36716 1.25150 1.22621 0.88602 1.02207 0.96478 1.62431 1.06833 1.52434 1.01633 1.22108 1.00846 0.92902 0.93605 1.21047 0.86510 0.89008 0.84289 1.90402 1.44119 1.71201 1.42463 1.42055 1.46295 1.13520 1.17091 1.19655 1.30824 0.88961 1.03877 0.88015 1.25292 0.96731 1.00386 0.95346 1.69599 1.37431 1.38384 1.08399 0.85927 0.79197 0.81677 0.77501 1.19868 1.20880 1.19853 0.92498 0.92576 0.92720 0.92094 0.92039 0.90941 0.91856 0.75585 0.88080 0.88293 0.91622 0.91233 0.91968 0.89905 0.92401 0.92188 0.75850 0.91207 0.88970 0.88787 0.89580 0.77402 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.52 37.16 0.32 -1.57 16 2 C 0.06 0.91 2.07 -67.73 -0.14 0.77 16 3 H 0.08 1.56 5.76 -51.93 -0.30 1.26 16 4 C -0.10 -1.29 5.20 -26.65 -0.14 -1.43 16 5 C -0.13 -1.68 5.67 -26.61 -0.15 -1.83 16 6 C 0.15 1.96 2.81 -67.85 -0.19 1.77 16 7 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 8 N -0.71 -7.52 4.41 -53.72 -0.24 -7.76 16 9 C 0.51 5.63 7.25 -10.98 -0.08 5.55 16 10 O -0.55 -7.48 11.44 -13.78 -0.16 -7.64 16 11 C -0.17 -1.44 4.98 -27.88 -0.14 -1.58 16 12 C 0.15 1.40 1.11 -90.62 -0.10 1.30 16 13 C -0.14 -1.07 8.84 37.15 0.33 -0.74 16 14 C -0.19 -1.83 8.49 37.16 0.32 -1.52 16 15 O -0.57 -6.88 12.95 -54.57 -0.71 -7.58 16 16 C 0.03 0.43 4.57 -3.83 -0.02 0.41 16 17 N -0.51 -7.18 4.17 -228.12 -0.95 -8.13 16 18 C 0.04 0.59 5.48 -4.97 -0.03 0.56 16 19 C 0.41 8.63 7.17 -10.99 -0.08 8.55 16 20 O -0.59 -14.20 11.23 5.54 0.06 -14.14 16 21 N -0.55 -13.18 5.29 -10.96 -0.06 -13.24 16 22 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 23 H 0.10 2.85 7.16 -52.49 -0.38 2.48 16 24 C 0.02 0.64 5.50 -17.46 -0.10 0.55 16 25 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 26 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 27 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.81 6.64 -51.93 -0.34 0.47 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.41 3.92 8.17 -40.82 -0.33 3.58 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.97 5.71 -51.93 -0.30 0.68 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.39 4.78 6.37 45.56 0.29 5.07 16 47 H 0.07 1.00 8.12 -51.93 -0.42 0.57 16 48 H 0.09 1.71 5.61 -51.93 -0.29 1.42 16 49 H 0.09 1.38 6.04 -51.93 -0.31 1.06 16 50 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 51 H 0.39 9.01 7.90 -40.82 -0.32 8.68 16 52 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -29.05 397.70 -8.83 -37.89 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -8.13 Total: 19.47 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.34 Total: 2.58 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.52 Total: -52.01 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.80 Total: -29.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.05 -8.83 -37.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132009608.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.169 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds