Wall clock time and date at job start Wed Apr 1 2020 00:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.45284 * 2 1 4 4 C 1.53034 * 109.46274 * 240.03028 * 2 1 3 5 5 C 1.53119 * 109.27922 * 180.80406 * 4 2 1 6 6 C 1.53117 * 109.15831 * 57.65427 * 5 4 2 7 7 H 1.09004 * 109.50546 * 182.36330 * 6 5 4 8 8 N 1.46500 * 109.50551 * 62.28458 * 6 5 4 9 9 C 1.34786 * 119.99679 * 85.00224 * 8 6 5 10 10 O 1.21280 * 119.99884 * 359.97438 * 9 8 6 11 11 C 1.50697 * 119.99574 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46907 * 186.92313 * 11 9 8 13 13 C 1.52995 * 109.47181 * 179.24217 * 12 11 9 14 14 C 1.52999 * 109.46820 * 59.24272 * 12 11 9 15 15 O 1.42904 * 109.47242 * 299.24397 * 12 11 9 16 16 C 1.53041 * 109.28022 * 302.34220 * 6 5 4 17 17 N 1.46841 * 109.46175 * 119.97510 * 2 1 3 18 18 C 1.46905 * 111.00345 * 305.85400 * 17 2 1 19 19 C 1.50697 * 109.46963 * 294.25956 * 18 17 2 20 20 O 1.21296 * 120.00475 * 6.28341 * 19 18 17 21 21 N 1.34779 * 119.99834 * 186.29377 * 19 18 17 22 22 C 1.37102 * 119.99871 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00227 * 359.97438 * 22 21 19 24 24 C 1.38956 * 119.99622 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00025 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99781 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47022 * 59.99672 * 26 24 22 28 28 H 1.48491 * 109.47115 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.47142 * 300.00125 * 26 24 22 30 30 H 1.08993 * 109.47000 * 187.19880 * 1 2 3 31 31 H 1.08999 * 109.46897 * 307.19542 * 1 2 3 32 32 H 1.09005 * 109.47133 * 67.19300 * 1 2 3 33 33 H 1.09000 * 109.50284 * 60.85871 * 4 2 1 34 34 H 1.09005 * 109.53550 * 300.76592 * 4 2 1 35 35 H 1.08995 * 109.52087 * 297.74876 * 5 4 2 36 36 H 1.09006 * 109.57503 * 177.58667 * 5 4 2 37 37 H 0.96992 * 120.00428 * 264.99689 * 8 6 5 38 38 H 1.09000 * 109.47414 * 66.92898 * 11 9 8 39 39 H 1.08996 * 109.47562 * 306.92205 * 11 9 8 40 40 H 1.09006 * 109.47517 * 175.39527 * 13 12 11 41 41 H 1.09003 * 109.47146 * 295.39580 * 13 12 11 42 42 H 1.08996 * 109.47275 * 55.39440 * 13 12 11 43 43 H 1.08993 * 109.47401 * 299.99874 * 14 12 11 44 44 H 1.09000 * 109.47393 * 60.00188 * 14 12 11 45 45 H 1.09003 * 109.46936 * 179.97438 * 14 12 11 46 46 H 0.96703 * 113.99882 * 59.99873 * 15 12 11 47 47 H 1.09000 * 109.46325 * 179.19358 * 16 6 5 48 48 H 1.08996 * 109.45975 * 299.17110 * 16 6 5 49 49 H 1.09001 * 109.46628 * 54.25413 * 18 17 2 50 50 H 1.08991 * 109.47139 * 174.25227 * 18 17 2 51 51 H 0.96999 * 119.99860 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99510 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2356 6 6 4.0548 -1.4187 0.0466 7 1 5.1440 -1.3953 0.0828 8 7 3.5947 -2.8095 0.0637 9 6 4.3120 -3.7643 -0.5611 10 8 5.3381 -3.4720 -1.1379 11 6 3.8384 -5.1948 -0.5440 12 6 4.9079 -6.0936 -1.1681 13 6 4.4352 -7.5483 -1.1336 14 6 6.2103 -5.9617 -0.3762 15 8 5.1319 -5.6975 -2.5227 16 6 3.4865 -0.6777 1.2591 17 7 2.0193 -0.6917 1.1993 18 6 1.4373 -0.1106 2.4166 19 6 1.9311 1.3033 2.5838 20 8 2.6001 1.8191 1.7134 21 7 1.6296 1.9947 3.7008 22 6 2.0784 3.2813 3.8527 23 1 2.6739 3.7405 3.0776 24 6 1.7671 3.9942 5.0041 25 7 1.0421 3.4355 5.9470 26 14 2.3791 5.7469 5.2114 27 1 1.8462 6.5906 4.1117 28 1 1.9138 6.2826 6.5158 29 1 3.8636 5.7608 5.1712 30 1 -0.3633 -1.0195 0.1288 31 1 -0.3633 0.6213 0.8186 32 1 -0.3634 0.3984 -0.9474 33 1 1.6894 -0.1980 -2.1399 34 1 1.6659 -1.7446 -1.2584 35 1 3.9456 0.2871 -1.2672 36 1 3.9389 -1.2856 -2.1021 37 1 2.7740 -3.0432 0.5248 38 1 2.9145 -5.2786 -1.1162 39 1 3.6580 -5.5056 0.4850 40 1 5.1592 -8.1780 -1.6507 41 1 4.3429 -7.8759 -0.0980 42 1 3.4667 -7.6274 -1.6273 43 1 6.5471 -4.9254 -0.4007 44 1 6.0396 -6.2638 0.6571 45 1 6.9722 -6.6023 -0.8205 46 1 5.4341 -4.7841 -2.6206 47 1 3.8175 -1.1699 2.1736 48 1 3.8403 0.3533 1.2531 49 1 0.3504 -0.1085 2.3343 50 1 1.7352 -0.7042 3.2808 51 1 1.0945 1.5823 4.3968 52 1 0.8251 3.9331 6.7509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132009608.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:22 Heat of formation + Delta-G solvation = -153.528533 kcal Electronic energy + Delta-G solvation = -31618.889191 eV Core-core repulsion = 27423.843525 eV Total energy + Delta-G solvation = -4195.045666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67240 -40.85559 -39.25012 -38.06837 -36.13730 -35.51736 -33.86736 -33.59051 -33.25110 -32.32717 -29.28940 -29.01189 -28.15572 -27.38477 -26.34289 -24.08378 -22.81845 -22.05130 -21.07714 -21.03471 -20.33933 -19.66633 -18.27182 -17.80213 -17.57217 -16.94258 -16.81392 -16.44050 -16.31688 -16.26150 -15.75061 -15.70730 -15.49989 -15.27434 -15.11352 -14.67442 -14.33000 -14.07741 -13.77490 -13.52351 -13.47235 -13.23729 -13.11820 -13.01547 -12.97837 -12.90245 -12.82832 -12.71754 -12.56005 -12.46088 -12.39601 -12.26463 -12.16437 -11.84396 -11.74872 -11.58735 -11.32925 -11.12328 -10.94125 -10.87863 -10.63189 -9.99377 -9.96203 -9.01312 -8.47105 -5.96416 1.35705 1.38898 1.48762 1.67963 2.02639 2.26984 2.27263 2.95360 3.19358 3.27602 3.40803 3.69719 3.78814 3.85922 3.91476 4.04710 4.10043 4.12903 4.32164 4.41559 4.43700 4.50760 4.58559 4.62103 4.64361 4.68859 4.71813 4.78644 4.81278 4.89664 4.94401 4.95982 5.02698 5.05598 5.08845 5.10048 5.14690 5.21681 5.27946 5.32285 5.38594 5.44132 5.51657 5.64327 5.90760 6.05420 6.14525 6.58416 6.69013 6.82573 7.11470 7.37534 7.55875 8.10879 8.67865 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021108 B = 0.002314 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.185547 B =12099.882225 C =12408.772595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.062 3.938 3 H 0.038 0.962 4 C -0.094 4.094 5 C -0.125 4.125 6 C 0.164 3.836 7 H 0.073 0.927 8 N -0.696 5.696 9 C 0.512 3.488 10 O -0.581 6.581 11 C -0.163 4.163 12 C 0.136 3.864 13 C -0.138 4.138 14 C -0.186 4.186 15 O -0.585 6.585 16 C 0.036 3.964 17 N -0.486 5.486 18 C 0.046 3.954 19 C 0.409 3.591 20 O -0.621 6.621 21 N -0.571 5.571 22 C -0.331 4.331 23 H 0.076 0.924 24 C -0.011 4.011 25 N -0.918 5.918 26 Si 0.987 3.013 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.274 1.274 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.418 0.582 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.383 0.617 47 H 0.077 0.923 48 H 0.050 0.950 49 H 0.116 0.884 50 H 0.110 0.890 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -19.744 -9.236 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.056 0.944 4 C -0.132 4.132 5 C -0.164 4.164 6 C 0.059 3.941 7 H 0.091 0.909 8 N -0.347 5.347 9 C 0.301 3.699 10 O -0.464 6.464 11 C -0.203 4.203 12 C 0.096 3.904 13 C -0.195 4.195 14 C -0.243 4.243 15 O -0.397 6.397 16 C -0.093 4.093 17 N -0.209 5.209 18 C -0.086 4.086 19 C 0.196 3.804 20 O -0.509 6.509 21 N -0.207 5.207 22 C -0.461 4.461 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.558 5.558 26 Si 0.811 3.189 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.255 0.745 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.236 0.764 47 H 0.095 0.905 48 H 0.068 0.932 49 H 0.133 0.867 50 H 0.128 0.872 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.394 -20.209 -10.148 22.617 hybrid contribution 0.330 2.671 1.093 2.905 sum 0.725 -17.538 -9.054 19.750 Atomic orbital electron populations 1.21828 0.93566 1.02754 1.01490 1.21841 0.95882 0.96786 0.90134 0.94408 1.21475 0.94128 1.01375 0.96175 1.21859 0.97120 0.99867 0.97570 1.20710 0.98011 0.81208 0.94213 0.90917 1.45919 1.27632 1.06475 1.54659 1.21152 0.83067 0.88408 0.77260 1.90516 1.26276 1.83531 1.46039 1.22491 1.01677 0.90064 1.06039 1.21072 0.92969 0.94770 0.81622 1.21800 1.01867 0.92138 1.03661 1.22626 0.97911 1.02934 1.00825 1.86380 1.89886 1.36423 1.27030 1.22469 0.88877 1.00134 0.97782 1.62536 1.06263 1.50995 1.01056 1.22222 1.02010 0.89181 0.95188 1.22182 0.84695 0.90755 0.82749 1.90426 1.44808 1.72526 1.43157 1.42128 1.47360 1.13067 1.18170 1.19564 1.31875 0.90696 1.03970 0.90584 1.25974 0.96745 1.03633 0.94805 1.69655 1.37975 1.39538 1.08660 0.85073 0.78501 0.77530 0.77765 1.19892 1.19520 1.19921 0.90038 0.94316 0.91660 0.91315 0.90070 0.92999 0.91624 0.74466 0.86531 0.85497 0.92340 0.88943 0.91407 0.92253 0.90649 0.92602 0.76389 0.90452 0.93168 0.86664 0.87198 0.77044 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.52 71.98 0.61 -2.71 16 2 C 0.06 1.74 2.07 44.94 0.09 1.83 16 3 H 0.04 1.45 5.76 -2.39 -0.01 1.44 16 4 C -0.09 -2.18 5.20 30.65 0.16 -2.02 16 5 C -0.13 -3.24 5.67 30.67 0.17 -3.07 16 6 C 0.16 4.16 2.81 45.04 0.13 4.28 16 7 H 0.07 2.08 7.58 -2.38 -0.02 2.06 16 8 N -0.70 -13.33 4.41 -442.27 -1.95 -15.28 16 9 C 0.51 10.23 7.25 87.65 0.64 10.86 16 10 O -0.58 -15.44 11.44 15.46 0.18 -15.26 16 11 C -0.16 -2.19 4.98 29.85 0.15 -2.04 16 12 C 0.14 2.32 1.11 -10.79 -0.01 2.31 16 13 C -0.14 -1.71 8.84 71.98 0.64 -1.07 16 14 C -0.19 -3.35 8.49 71.98 0.61 -2.74 16 15 O -0.59 -13.61 12.95 -130.49 -1.69 -15.31 16 16 C 0.04 1.05 4.57 86.33 0.39 1.45 16 17 N -0.49 -12.97 4.17 -875.65 -3.65 -16.63 16 18 C 0.05 1.37 5.48 85.56 0.47 1.84 16 19 C 0.41 17.67 7.17 87.66 0.63 18.30 16 20 O -0.62 -30.95 11.23 -3.08 -0.03 -30.99 16 21 N -0.57 -27.69 5.29 -306.97 -1.62 -29.32 16 22 C -0.33 -18.17 9.68 84.04 0.81 -17.36 16 23 H 0.08 4.48 7.16 -2.91 -0.02 4.46 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 25 N -0.92 -48.35 13.05 21.67 0.28 -48.06 16 26 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 27 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.06 6.64 -2.39 -0.02 1.04 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.61 7.73 -2.38 -0.02 1.60 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.42 6.54 8.17 -92.71 -0.76 5.79 16 38 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 1.37 5.71 -2.39 -0.01 1.36 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.38 9.42 6.37 -74.06 -0.47 8.94 16 47 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 48 H 0.05 1.95 5.61 -2.39 -0.01 1.93 16 49 H 0.12 3.09 6.04 -2.39 -0.01 3.08 16 50 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 51 H 0.40 18.34 7.90 -92.71 -0.73 17.60 16 52 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -65.92 397.70 -1.51 -67.44 By element: Atomic # 1 Polarization: 50.34 SS G_CDS: -1.01 Total: 49.33 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.96 Total: 9.73 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -6.94 Total: -109.29 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -1.55 Total: -61.55 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -65.92 -1.51 -67.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132009608.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.092 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds