Wall clock time and date at job start Wed Apr 1 2020 00:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.46346 * 2 1 4 4 C 1.53036 * 109.46408 * 119.97745 * 2 1 3 5 5 C 1.53125 * 109.27821 * 179.19393 * 4 2 1 6 6 C 1.53113 * 109.16030 * 302.34655 * 5 4 2 7 7 H 1.09001 * 109.49956 * 177.59335 * 6 5 4 8 8 N 1.46499 * 109.50409 * 297.71237 * 6 5 4 9 9 C 1.34775 * 119.99949 * 275.00169 * 8 6 5 10 10 O 1.21286 * 120.00194 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00047 * 179.97438 * 9 8 6 12 12 C 1.53002 * 109.47295 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46689 * 59.99918 * 12 11 9 14 14 C 1.52997 * 109.47038 * 180.02562 * 12 11 9 15 15 O 1.42898 * 109.47456 * 300.00505 * 12 11 9 16 16 C 1.53034 * 109.28088 * 57.65758 * 6 5 4 17 17 N 1.46847 * 109.52238 * 300.81728 * 16 6 5 18 18 C 1.46892 * 111.00504 * 185.83893 * 17 16 6 19 19 C 1.50698 * 109.47353 * 301.26378 * 18 17 16 20 20 O 1.21292 * 119.99785 * 354.36299 * 19 18 17 21 21 N 1.34779 * 120.00405 * 174.36200 * 19 18 17 22 22 C 1.37096 * 119.99909 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00495 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99928 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00366 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99777 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46743 * 90.00566 * 26 24 22 28 28 H 1.48497 * 109.46826 * 210.00002 * 26 24 22 29 29 H 1.48500 * 109.47260 * 330.00631 * 26 24 22 30 30 H 1.09005 * 109.47182 * 293.63214 * 1 2 3 31 31 H 1.09000 * 109.47291 * 53.62917 * 1 2 3 32 32 H 1.09000 * 109.47232 * 173.63507 * 1 2 3 33 33 H 1.09000 * 109.50378 * 59.25728 * 4 2 1 34 34 H 1.08994 * 109.53651 * 299.15513 * 4 2 1 35 35 H 1.09004 * 109.52312 * 62.25214 * 5 4 2 36 36 H 1.08996 * 109.52068 * 182.43592 * 5 4 2 37 37 H 0.96994 * 119.99640 * 95.00352 * 8 6 5 38 38 H 1.08995 * 109.46970 * 300.00424 * 11 9 8 39 39 H 1.09005 * 109.46577 * 60.00322 * 11 9 8 40 40 H 1.09011 * 109.46933 * 60.00175 * 13 12 11 41 41 H 1.09004 * 109.47342 * 179.97438 * 13 12 11 42 42 H 1.08991 * 109.47702 * 300.00208 * 13 12 11 43 43 H 1.08994 * 109.47190 * 60.00645 * 14 12 11 44 44 H 1.09010 * 109.46813 * 180.02562 * 14 12 11 45 45 H 1.08997 * 109.47497 * 300.00269 * 14 12 11 46 46 H 0.96707 * 113.99688 * 299.99887 * 15 12 11 47 47 H 1.09001 * 109.46733 * 180.80372 * 16 6 5 48 48 H 1.09000 * 109.45911 * 60.82447 * 16 6 5 49 49 H 1.09003 * 109.46961 * 61.26101 * 18 17 16 50 50 H 1.08998 * 109.48060 * 181.26032 * 18 17 16 51 51 H 0.96996 * 120.00119 * 0.02562 * 21 19 18 52 52 H 0.96994 * 120.00094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7361 1.2355 6 6 4.0547 -1.4187 -0.0469 7 1 5.1438 -1.3946 -0.0833 8 7 3.5947 -2.8095 -0.0641 9 6 4.3119 -3.7643 0.5607 10 8 5.3380 -3.4721 1.1375 11 6 3.8384 -5.1949 0.5434 12 6 4.8266 -6.0686 1.3187 13 6 4.9151 -5.5780 2.7652 14 6 4.3462 -7.5211 1.3007 15 8 6.1160 -5.9862 0.7082 16 6 3.4865 -0.6775 -1.2592 17 7 2.0193 -0.6916 -1.1995 18 6 1.4372 -0.1104 -2.4165 19 6 1.9257 1.3058 -2.5801 20 8 2.6009 1.8185 -1.7127 21 7 1.6123 2.0028 -3.6903 22 6 2.0563 3.2914 -3.8388 23 1 2.6576 3.7479 -3.0665 24 6 1.7328 4.0101 -4.9832 25 7 2.1588 5.2451 -5.1259 26 14 0.6935 3.2204 -6.3195 27 1 -0.7430 3.4828 -6.0492 28 1 1.0621 3.7956 -7.6380 29 1 0.9350 1.7552 -6.3334 30 1 -0.3634 0.4120 0.9415 31 1 -0.3634 0.6094 -0.8275 32 1 -0.3634 -1.0213 -0.1139 33 1 1.6659 -1.7448 1.2575 34 1 1.6895 -0.1989 2.1402 35 1 3.9457 0.2870 1.2671 36 1 3.9379 -1.2863 2.1018 37 1 2.7739 -3.0431 -0.5251 38 1 2.8548 -5.2576 1.0087 39 1 3.7759 -5.5445 -0.4871 40 1 3.9315 -5.6408 3.2310 41 1 5.6188 -6.2007 3.3177 42 1 5.2575 -4.5433 2.7777 43 1 4.2836 -7.8703 0.2701 44 1 5.0500 -8.1435 1.8534 45 1 3.3626 -7.5843 1.7661 46 1 6.1349 -6.2820 -0.2123 47 1 3.8174 -1.1696 -2.1737 48 1 3.8402 0.3534 -1.2530 49 1 1.7391 -0.7010 -3.2815 50 1 0.3502 -0.1127 -2.3365 51 1 1.0720 1.5931 -4.3839 52 1 1.9332 5.7466 -5.9248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132009609.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:27 Heat of formation + Delta-G solvation = -119.446180 kcal Electronic energy + Delta-G solvation = -31648.036392 eV Core-core repulsion = 27454.468647 eV Total energy + Delta-G solvation = -4193.567745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49141 -39.60129 -38.04754 -37.16259 -34.70561 -33.96068 -32.90535 -32.54823 -31.77097 -31.31247 -28.48347 -27.76517 -27.51478 -26.24888 -24.51338 -22.77416 -21.78446 -20.90732 -20.25882 -19.53800 -19.18340 -18.15019 -17.56888 -16.53963 -16.12410 -15.79896 -15.70697 -15.40298 -15.00447 -14.82503 -14.81633 -14.47708 -14.32863 -13.83455 -13.68116 -13.45250 -13.33641 -12.88949 -12.75139 -12.56545 -12.44322 -12.34863 -12.26314 -12.03909 -11.89717 -11.81010 -11.75847 -11.67434 -11.45793 -11.34733 -11.07522 -10.92599 -10.68727 -10.54120 -10.40135 -10.30354 -10.08701 -9.98507 -9.60649 -9.46758 -9.39060 -8.85494 -8.26370 -7.58081 -6.40529 -3.91955 2.73084 2.95489 2.99954 3.09086 3.24267 3.59071 4.01873 4.05503 4.15289 4.41342 4.56833 4.59432 4.72984 4.92058 4.97967 5.04856 5.10299 5.11576 5.17650 5.23091 5.28048 5.33554 5.53856 5.56780 5.65381 5.66275 5.68342 5.70916 5.77073 5.81383 5.83043 5.88382 5.89211 6.01477 6.04773 6.12452 6.19734 6.26808 6.31617 6.36100 6.39912 6.64535 6.77715 7.19911 7.34453 7.47093 7.54544 7.69246 8.05574 8.38877 8.47971 8.85026 9.32574 9.70440 10.72193 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002394 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.434212 B =11695.012898 C =12017.402261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.061 3.939 3 H 0.084 0.916 4 C -0.103 4.103 5 C -0.130 4.130 6 C 0.155 3.845 7 H 0.086 0.914 8 N -0.714 5.714 9 C 0.508 3.492 10 O -0.525 6.525 11 C -0.171 4.171 12 C 0.146 3.854 13 C -0.152 4.152 14 C -0.179 4.179 15 O -0.543 6.543 16 C 0.029 3.971 17 N -0.509 5.509 18 C 0.034 3.966 19 C 0.415 3.585 20 O -0.576 6.576 21 N -0.583 5.583 22 C -0.308 4.308 23 H 0.119 0.881 24 C 0.042 3.958 25 N -0.877 5.877 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.405 0.595 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.367 0.633 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.371 0.629 52 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 -23.303 9.024 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 H 0.102 0.898 4 C -0.141 4.141 5 C -0.168 4.168 6 C 0.051 3.949 7 H 0.104 0.896 8 N -0.366 5.366 9 C 0.294 3.706 10 O -0.402 6.402 11 C -0.211 4.211 12 C 0.104 3.896 13 C -0.209 4.209 14 C -0.237 4.237 15 O -0.347 6.347 16 C -0.099 4.099 17 N -0.232 5.232 18 C -0.098 4.098 19 C 0.201 3.799 20 O -0.461 6.461 21 N -0.221 5.221 22 C -0.437 4.437 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.517 5.517 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.194 1.194 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.213 0.787 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.105 0.895 50 H 0.113 0.887 51 H 0.204 0.796 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.635 -22.793 10.517 25.155 hybrid contribution -1.342 0.074 -2.243 2.615 sum -2.977 -22.718 8.274 24.360 Atomic orbital electron populations 1.21869 0.95234 1.01485 1.01580 1.21887 0.94542 0.99019 0.89204 0.89806 1.21529 0.95139 1.00474 0.96916 1.21924 0.96265 1.01024 0.97614 1.20968 0.98937 0.80114 0.94922 0.89557 1.46084 1.27520 1.07581 1.55444 1.20416 0.84161 0.87051 0.78953 1.90674 1.23991 1.82698 1.42805 1.22479 1.01713 0.93921 1.03032 1.20876 0.82574 0.92208 0.93912 1.21988 1.01472 1.04867 0.92584 1.22530 1.02130 0.96646 1.02362 1.86722 1.29544 1.88860 1.29615 1.22635 0.88289 1.02266 0.96748 1.62427 1.07068 1.52293 1.01450 1.22162 1.00978 0.92610 0.94032 1.21016 0.86109 0.88850 0.83912 1.90447 1.42575 1.71168 1.41872 1.42409 1.47536 1.14108 1.18030 1.19443 1.31284 0.86884 1.06069 0.86337 1.25087 0.97747 0.95613 0.97689 1.69621 1.44417 1.09054 1.28559 0.86665 0.81079 0.79309 0.82309 1.19566 1.20114 1.19422 0.92616 0.92652 0.92509 0.92039 0.92096 0.90972 0.91872 0.76036 0.88381 0.89009 0.92161 0.92469 0.88864 0.92366 0.91544 0.91575 0.78658 0.91190 0.89022 0.89482 0.88663 0.79638 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.54 37.15 0.32 -1.49 16 2 C 0.06 0.88 2.07 -67.72 -0.14 0.74 16 3 H 0.08 1.55 5.76 -51.93 -0.30 1.25 16 4 C -0.10 -1.27 5.21 -26.65 -0.14 -1.41 16 5 C -0.13 -1.73 5.67 -26.61 -0.15 -1.88 16 6 C 0.16 2.06 2.81 -67.86 -0.19 1.87 16 7 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 8 N -0.71 -7.81 4.41 -53.73 -0.24 -8.05 16 9 C 0.51 5.86 7.35 -10.99 -0.08 5.78 16 10 O -0.53 -8.09 12.62 -12.69 -0.16 -8.25 16 11 C -0.17 -1.33 4.95 -27.88 -0.14 -1.47 16 12 C 0.15 1.27 0.98 -90.62 -0.09 1.19 16 13 C -0.15 -1.53 8.52 37.16 0.32 -1.21 16 14 C -0.18 -1.11 8.82 37.16 0.33 -0.78 16 15 O -0.54 -5.85 11.88 -53.47 -0.64 -6.49 16 16 C 0.03 0.42 4.57 -3.84 -0.02 0.41 16 17 N -0.51 -6.99 4.17 -228.13 -0.95 -7.94 16 18 C 0.03 0.51 5.47 -4.98 -0.03 0.48 16 19 C 0.42 8.57 7.18 -10.99 -0.08 8.49 16 20 O -0.58 -13.78 11.22 5.55 0.06 -13.71 16 21 N -0.58 -13.10 5.09 -10.96 -0.06 -13.15 16 22 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 23 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.07 13.96 55.50 0.77 -24.30 16 26 Si 0.88 18.76 27.74 -169.99 -4.71 14.05 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 29 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.76 6.60 -51.93 -0.34 0.41 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.70 7.73 -51.93 -0.40 0.30 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.40 3.86 8.17 -40.82 -0.33 3.53 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.22 5.51 -51.93 -0.29 0.93 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.37 2.57 9.05 45.56 0.41 2.98 16 47 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 48 H 0.09 1.71 5.61 -51.93 -0.29 1.42 16 49 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.10 1.27 6.04 -51.93 -0.31 0.96 16 51 H 0.37 7.34 5.76 -40.82 -0.24 7.11 16 52 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 397.08 15.07 5.98 5.98 Total: -1.00 -32.63 397.08 -8.23 -40.85 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -7.96 Total: 17.79 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.34 Total: 3.21 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.47 Total: -53.44 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.73 Total: -28.45 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.05 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.63 -8.23 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132009609.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.591 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds