Wall clock time and date at job start Wed Apr 1 2020 00:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.46346 * 2 1 4 4 C 1.53036 * 109.46408 * 119.97745 * 2 1 3 5 5 C 1.53125 * 109.27821 * 179.19393 * 4 2 1 6 6 C 1.53113 * 109.16030 * 302.34655 * 5 4 2 7 7 H 1.09001 * 109.49956 * 177.59335 * 6 5 4 8 8 N 1.46499 * 109.50409 * 297.71237 * 6 5 4 9 9 C 1.34775 * 119.99949 * 275.00169 * 8 6 5 10 10 O 1.21286 * 120.00194 * 0.02562 * 9 8 6 11 11 C 1.50700 * 120.00047 * 179.97438 * 9 8 6 12 12 C 1.53002 * 109.47295 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46689 * 59.99918 * 12 11 9 14 14 C 1.52997 * 109.47038 * 180.02562 * 12 11 9 15 15 O 1.42898 * 109.47456 * 300.00505 * 12 11 9 16 16 C 1.53034 * 109.28088 * 57.65758 * 6 5 4 17 17 N 1.46847 * 109.52238 * 300.81728 * 16 6 5 18 18 C 1.46892 * 111.00504 * 185.83893 * 17 16 6 19 19 C 1.50698 * 109.47353 * 301.26378 * 18 17 16 20 20 O 1.21292 * 119.99785 * 354.36299 * 19 18 17 21 21 N 1.34779 * 120.00405 * 174.36200 * 19 18 17 22 22 C 1.37096 * 119.99909 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00495 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99928 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00366 * 180.02562 * 24 22 21 26 26 Si 1.86805 * 119.99777 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46743 * 90.00566 * 26 24 22 28 28 H 1.48497 * 109.46826 * 210.00002 * 26 24 22 29 29 H 1.48500 * 109.47260 * 330.00631 * 26 24 22 30 30 H 1.09005 * 109.47182 * 293.63214 * 1 2 3 31 31 H 1.09000 * 109.47291 * 53.62917 * 1 2 3 32 32 H 1.09000 * 109.47232 * 173.63507 * 1 2 3 33 33 H 1.09000 * 109.50378 * 59.25728 * 4 2 1 34 34 H 1.08994 * 109.53651 * 299.15513 * 4 2 1 35 35 H 1.09004 * 109.52312 * 62.25214 * 5 4 2 36 36 H 1.08996 * 109.52068 * 182.43592 * 5 4 2 37 37 H 0.96994 * 119.99640 * 95.00352 * 8 6 5 38 38 H 1.08995 * 109.46970 * 300.00424 * 11 9 8 39 39 H 1.09005 * 109.46577 * 60.00322 * 11 9 8 40 40 H 1.09011 * 109.46933 * 60.00175 * 13 12 11 41 41 H 1.09004 * 109.47342 * 179.97438 * 13 12 11 42 42 H 1.08991 * 109.47702 * 300.00208 * 13 12 11 43 43 H 1.08994 * 109.47190 * 60.00645 * 14 12 11 44 44 H 1.09010 * 109.46813 * 180.02562 * 14 12 11 45 45 H 1.08997 * 109.47497 * 300.00269 * 14 12 11 46 46 H 0.96707 * 113.99688 * 299.99887 * 15 12 11 47 47 H 1.09001 * 109.46733 * 180.80372 * 16 6 5 48 48 H 1.09000 * 109.45911 * 60.82447 * 16 6 5 49 49 H 1.09003 * 109.46961 * 61.26101 * 18 17 16 50 50 H 1.08998 * 109.48060 * 181.26032 * 18 17 16 51 51 H 0.96996 * 120.00119 * 0.02562 * 21 19 18 52 52 H 0.96994 * 120.00094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7361 1.2355 6 6 4.0547 -1.4187 -0.0469 7 1 5.1438 -1.3946 -0.0833 8 7 3.5947 -2.8095 -0.0641 9 6 4.3119 -3.7643 0.5607 10 8 5.3380 -3.4721 1.1375 11 6 3.8384 -5.1949 0.5434 12 6 4.8266 -6.0686 1.3187 13 6 4.9151 -5.5780 2.7652 14 6 4.3462 -7.5211 1.3007 15 8 6.1160 -5.9862 0.7082 16 6 3.4865 -0.6775 -1.2592 17 7 2.0193 -0.6916 -1.1995 18 6 1.4372 -0.1104 -2.4165 19 6 1.9257 1.3058 -2.5801 20 8 2.6009 1.8185 -1.7127 21 7 1.6123 2.0028 -3.6903 22 6 2.0563 3.2914 -3.8388 23 1 2.6576 3.7479 -3.0665 24 6 1.7328 4.0101 -4.9832 25 7 2.1588 5.2451 -5.1259 26 14 0.6935 3.2204 -6.3195 27 1 -0.7430 3.4828 -6.0492 28 1 1.0621 3.7956 -7.6380 29 1 0.9350 1.7552 -6.3334 30 1 -0.3634 0.4120 0.9415 31 1 -0.3634 0.6094 -0.8275 32 1 -0.3634 -1.0213 -0.1139 33 1 1.6659 -1.7448 1.2575 34 1 1.6895 -0.1989 2.1402 35 1 3.9457 0.2870 1.2671 36 1 3.9379 -1.2863 2.1018 37 1 2.7739 -3.0431 -0.5251 38 1 2.8548 -5.2576 1.0087 39 1 3.7759 -5.5445 -0.4871 40 1 3.9315 -5.6408 3.2310 41 1 5.6188 -6.2007 3.3177 42 1 5.2575 -4.5433 2.7777 43 1 4.2836 -7.8703 0.2701 44 1 5.0500 -8.1435 1.8534 45 1 3.3626 -7.5843 1.7661 46 1 6.1349 -6.2820 -0.2123 47 1 3.8174 -1.1696 -2.1737 48 1 3.8402 0.3534 -1.2530 49 1 1.7391 -0.7010 -3.2815 50 1 0.3502 -0.1127 -2.3365 51 1 1.0720 1.5931 -4.3839 52 1 1.9332 5.7466 -5.9248 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132009609.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:26 Heat of formation + Delta-G solvation = -146.355853 kcal Electronic energy + Delta-G solvation = -31649.203283 eV Core-core repulsion = 27454.468647 eV Total energy + Delta-G solvation = -4194.734636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62311 -40.76359 -39.29614 -38.18599 -36.15875 -35.50478 -33.88566 -33.67781 -33.55514 -32.33498 -29.27156 -29.11612 -28.12498 -27.38067 -26.20597 -24.03540 -22.78615 -21.99532 -21.26791 -21.01289 -20.54077 -19.78665 -18.43953 -17.70954 -17.39091 -16.91974 -16.85142 -16.54280 -16.29138 -16.14461 -15.75602 -15.46561 -15.35392 -15.17272 -15.11071 -14.66737 -14.51090 -14.46338 -14.01919 -13.76744 -13.36399 -13.18421 -13.06380 -13.04745 -12.98487 -12.88173 -12.82335 -12.63308 -12.55867 -12.43587 -12.41560 -12.22306 -12.01856 -11.73867 -11.61061 -11.57072 -11.32993 -11.14083 -11.00375 -10.99113 -10.40018 -10.21552 -9.87832 -9.03638 -8.42879 -6.03205 1.29242 1.34470 1.43760 1.86312 1.93140 2.21913 2.34155 2.93222 2.98524 3.14609 3.47115 3.74157 3.79226 3.87080 3.95720 4.02747 4.09517 4.14341 4.25437 4.31831 4.44398 4.49702 4.58160 4.62241 4.66321 4.70019 4.72149 4.78088 4.81655 4.91466 4.94778 4.96495 5.01963 5.05500 5.09123 5.14048 5.15743 5.21748 5.28706 5.34457 5.47461 5.52275 5.53248 5.73303 5.91532 6.01508 6.11567 6.56969 6.83115 6.88136 7.02305 7.39042 7.53102 7.95949 8.74745 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020607 B = 0.002394 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.434212 B =11695.012898 C =12017.402261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.060 3.940 3 H 0.034 0.966 4 C -0.092 4.092 5 C -0.127 4.127 6 C 0.166 3.834 7 H 0.064 0.936 8 N -0.702 5.702 9 C 0.504 3.496 10 O -0.569 6.569 11 C -0.161 4.161 12 C 0.139 3.861 13 C -0.154 4.154 14 C -0.171 4.171 15 O -0.573 6.573 16 C 0.036 3.964 17 N -0.483 5.483 18 C 0.042 3.958 19 C 0.418 3.582 20 O -0.612 6.612 21 N -0.589 5.589 22 C -0.325 4.325 23 H 0.052 0.948 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.965 3.035 27 H -0.257 1.257 28 H -0.278 1.278 29 H -0.228 1.228 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.381 0.619 47 H 0.081 0.919 48 H 0.045 0.955 49 H 0.122 0.878 50 H 0.127 0.873 51 H 0.389 0.611 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -28.095 7.667 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 H 0.052 0.948 4 C -0.130 4.130 5 C -0.165 4.165 6 C 0.060 3.940 7 H 0.082 0.918 8 N -0.355 5.355 9 C 0.292 3.708 10 O -0.448 6.448 11 C -0.201 4.201 12 C 0.099 3.901 13 C -0.211 4.211 14 C -0.228 4.228 15 O -0.381 6.381 16 C -0.092 4.092 17 N -0.206 5.206 18 C -0.090 4.090 19 C 0.205 3.795 20 O -0.498 6.498 21 N -0.230 5.230 22 C -0.455 4.455 23 H 0.070 0.930 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.785 3.215 27 H -0.181 1.181 28 H -0.204 1.204 29 H -0.151 1.151 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.229 0.771 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.139 0.861 50 H 0.145 0.855 51 H 0.225 0.775 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.128 -27.634 9.170 29.564 hybrid contribution -0.115 1.608 -1.619 2.285 sum -5.243 -26.026 7.551 27.602 Atomic orbital electron populations 1.21834 0.93075 1.03082 1.01625 1.21862 0.96225 0.96574 0.90190 0.94823 1.21463 0.93733 1.01561 0.96216 1.21861 0.97479 0.99519 0.97678 1.20599 0.97606 0.81711 0.94107 0.91832 1.45906 1.27884 1.06178 1.55495 1.21173 0.83360 0.88519 0.77711 1.90683 1.26052 1.83562 1.44537 1.22494 1.02300 0.90331 1.04926 1.21017 0.82226 0.94057 0.92843 1.21993 1.02306 1.02535 0.94306 1.22437 1.02514 0.94260 1.03590 1.86689 1.31144 1.89284 1.30939 1.22463 0.88960 0.99897 0.97915 1.62534 1.06103 1.50810 1.01122 1.22396 1.02672 0.88297 0.95635 1.22386 0.83966 0.90822 0.82276 1.90487 1.43600 1.72718 1.43024 1.42253 1.48715 1.12586 1.19491 1.18974 1.31859 0.89391 1.05275 0.92979 1.26169 0.99055 0.95940 1.00493 1.69813 1.46626 1.11350 1.29865 0.85359 0.78748 0.80286 0.77089 1.18141 1.20372 1.15113 0.91865 0.93862 0.89583 0.89653 0.91456 0.93535 0.92059 0.74581 0.85643 0.86136 0.90076 0.93186 0.92316 0.90622 0.92401 0.89976 0.77071 0.90028 0.93639 0.86059 0.85547 0.77525 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.54 71.98 0.61 -2.43 16 2 C 0.06 1.64 2.07 44.93 0.09 1.73 16 3 H 0.03 1.30 5.76 -2.39 -0.01 1.29 16 4 C -0.09 -2.14 5.21 30.65 0.16 -1.98 16 5 C -0.13 -3.46 5.67 30.67 0.17 -3.29 16 6 C 0.17 4.42 2.81 45.04 0.13 4.54 16 7 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 8 N -0.70 -13.73 4.41 -442.30 -1.95 -15.68 16 9 C 0.50 10.68 7.35 87.66 0.64 11.32 16 10 O -0.57 -17.64 12.62 14.39 0.18 -17.46 16 11 C -0.16 -1.88 4.95 29.85 0.15 -1.74 16 12 C 0.14 2.11 0.98 -10.79 -0.01 2.10 16 13 C -0.15 -2.95 8.52 71.98 0.61 -2.34 16 14 C -0.17 -1.51 8.82 71.98 0.63 -0.87 16 15 O -0.57 -11.73 11.88 -131.54 -1.56 -13.30 16 16 C 0.04 1.06 4.57 86.32 0.39 1.46 16 17 N -0.48 -12.18 4.17 -875.68 -3.65 -15.83 16 18 C 0.04 1.11 5.47 85.56 0.47 1.58 16 19 C 0.42 17.28 7.18 87.66 0.63 17.91 16 20 O -0.61 -31.07 11.22 -3.07 -0.03 -31.11 16 21 N -0.59 -26.36 5.09 -306.98 -1.56 -27.92 16 22 C -0.33 -18.59 10.16 84.04 0.85 -17.74 16 23 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 24 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 25 N -0.94 -56.11 13.96 21.66 0.30 -55.81 16 26 Si 0.97 37.82 27.74 68.60 1.90 39.73 16 27 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 28 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 30 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.04 1.06 6.60 -2.39 -0.02 1.04 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.62 7.73 -2.39 -0.02 1.60 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.42 6.19 8.17 -92.71 -0.76 5.43 16 38 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.06 1.56 5.51 -2.39 -0.01 1.55 16 43 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.38 4.70 9.05 -74.05 -0.67 4.03 16 47 H 0.08 2.19 8.12 -2.39 -0.02 2.17 16 48 H 0.05 1.80 5.61 -2.39 -0.01 1.79 16 49 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 50 H 0.13 2.75 6.04 -2.39 -0.01 2.73 16 51 H 0.39 14.31 5.76 -92.71 -0.53 13.77 16 52 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -81.58 397.08 -1.43 -83.01 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -1.07 Total: 44.65 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 6.01 Total: 9.72 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -6.86 Total: -115.24 kcal Atomic # 8 Polarization: -60.45 SS G_CDS: -1.42 Total: -61.86 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 1.90 Total: 39.73 kcal Total: -81.58 -1.43 -83.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132009609.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.342 kcal (2) G-P(sol) polarization free energy of solvation -81.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds