Wall clock time and date at job start Wed Apr 1 2020 00:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46642 * 2 1 4 4 C 1.53035 * 109.45681 * 119.97435 * 2 1 3 5 5 C 1.53113 * 109.28360 * 179.18789 * 4 2 1 6 6 C 1.53121 * 109.15972 * 302.34652 * 5 4 2 7 7 H 1.09004 * 109.49930 * 297.71071 * 6 5 4 8 8 N 1.46500 * 109.50290 * 177.63555 * 6 5 4 9 9 C 1.34771 * 120.00506 * 84.99791 * 8 6 5 10 10 O 1.21285 * 119.99558 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00397 * 180.02562 * 9 8 6 12 12 C 1.52993 * 109.47145 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47901 * 59.99599 * 12 11 9 14 14 C 1.53005 * 109.47044 * 180.02562 * 12 11 9 15 15 O 1.42905 * 109.46890 * 299.99457 * 12 11 9 16 16 C 1.53037 * 109.27795 * 57.65294 * 6 5 4 17 17 N 1.46849 * 109.52173 * 300.81777 * 16 6 5 18 18 C 1.46906 * 110.99790 * 185.83984 * 17 16 6 19 19 C 1.50699 * 109.47119 * 300.41536 * 18 17 16 20 20 O 1.21297 * 120.00132 * 354.32928 * 19 18 17 21 21 N 1.34773 * 119.99829 * 174.06027 * 19 18 17 22 22 C 1.37097 * 120.00030 * 180.27132 * 21 19 18 23 23 H 1.07995 * 120.00253 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99988 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00367 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99959 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47300 * 59.99387 * 26 24 22 28 28 H 1.48500 * 109.47140 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46968 * 299.99802 * 26 24 22 30 30 H 1.08992 * 109.47379 * 173.13515 * 1 2 3 31 31 H 1.09003 * 109.46671 * 293.13432 * 1 2 3 32 32 H 1.09001 * 109.47242 * 53.13013 * 1 2 3 33 33 H 1.09002 * 109.50001 * 299.13099 * 4 2 1 34 34 H 1.09007 * 109.50256 * 59.20402 * 4 2 1 35 35 H 1.09004 * 109.51915 * 62.24561 * 5 4 2 36 36 H 1.08996 * 109.52229 * 182.37516 * 5 4 2 37 37 H 0.97009 * 119.99758 * 264.99701 * 8 6 5 38 38 H 1.09000 * 109.46860 * 300.00081 * 11 9 8 39 39 H 1.08995 * 109.47076 * 59.99349 * 11 9 8 40 40 H 1.09000 * 109.46739 * 59.99859 * 13 12 11 41 41 H 1.08997 * 109.47741 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.46750 * 300.00462 * 13 12 11 43 43 H 1.08994 * 109.47550 * 59.99692 * 14 12 11 44 44 H 1.09002 * 109.47232 * 179.97438 * 14 12 11 45 45 H 1.09002 * 109.46719 * 299.98854 * 14 12 11 46 46 H 0.96697 * 114.00246 * 300.00087 * 15 12 11 47 47 H 1.09000 * 109.46132 * 180.81007 * 16 6 5 48 48 H 1.08994 * 109.46594 * 60.83904 * 16 6 5 49 49 H 1.08993 * 109.46913 * 180.41321 * 18 17 16 50 50 H 1.09000 * 109.46995 * 60.41285 * 18 17 16 51 51 H 0.97006 * 120.00307 * 0.27463 * 21 19 18 52 52 H 0.96993 * 120.00846 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7364 1.2358 6 6 4.0545 -1.4192 -0.0465 7 1 3.7120 -2.4540 -0.0592 8 7 5.5184 -1.3880 -0.0949 9 6 6.2339 -2.3439 0.5300 10 8 5.6659 -3.2304 1.1321 11 6 7.7398 -2.3114 0.4807 12 6 8.3014 -3.5002 1.2631 13 6 7.7988 -4.8041 0.6403 14 6 9.8303 -3.4668 1.2136 15 8 7.8676 -3.4234 2.6226 16 6 3.4865 -0.6780 -1.2589 17 7 2.0192 -0.6919 -1.1993 18 6 1.4374 -0.1106 -2.4166 19 6 1.9098 1.3123 -2.5691 20 8 2.5731 1.8282 -1.6944 21 7 1.5998 2.0098 -3.6798 22 6 2.0341 3.3024 -3.8211 23 1 2.6244 3.7620 -3.0421 24 6 1.7141 4.0218 -4.9660 25 7 0.9954 3.4629 -5.9137 26 14 2.3065 5.7828 -5.1588 27 1 3.7907 5.8129 -5.1193 28 1 1.8353 6.3241 -6.4588 29 1 1.7651 6.6112 -4.0517 30 1 -0.3634 -1.0202 -0.1228 31 1 -0.3633 0.4038 0.9451 32 1 -0.3634 0.6166 -0.8221 33 1 1.6893 -0.1981 2.1399 34 1 1.6649 -1.7445 1.2580 35 1 3.9456 0.2867 1.2673 36 1 3.9375 -1.2857 2.1028 37 1 5.9727 -0.6792 -0.5768 38 1 8.0707 -2.3703 -0.5562 39 1 8.0978 -1.3823 0.9241 40 1 8.1297 -4.8626 -0.3966 41 1 8.1993 -5.6510 1.1974 42 1 6.7096 -4.8276 0.6760 43 1 10.1881 -2.5379 1.6576 44 1 10.2305 -4.3135 1.7714 45 1 10.1615 -3.5252 0.1767 46 1 8.1509 -2.6206 3.0811 47 1 3.8174 -1.1704 -2.1734 48 1 3.8405 0.3528 -1.2531 49 1 0.3501 -0.1266 -2.3430 50 1 1.7516 -0.6925 -3.2831 51 1 1.0692 1.5973 -4.3794 52 1 0.7723 3.9648 -6.7131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132009610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:30 Heat of formation + Delta-G solvation = -127.154138 kcal Electronic energy + Delta-G solvation = -31330.873337 eV Core-core repulsion = 27136.971350 eV Total energy + Delta-G solvation = -4193.901987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.37606 -39.54484 -37.93750 -37.12487 -34.82042 -33.97818 -32.90786 -32.50073 -31.35373 -31.21593 -28.57053 -27.57916 -27.48819 -25.90339 -24.57289 -22.78362 -21.72171 -20.69390 -20.23796 -19.81580 -19.03723 -17.86008 -17.49724 -16.59150 -16.08613 -15.89068 -15.73415 -15.13871 -14.92868 -14.76747 -14.57172 -14.38718 -14.28262 -13.96452 -13.74855 -13.57954 -13.10911 -13.07254 -12.58993 -12.51049 -12.39675 -12.26189 -12.18147 -11.97836 -11.77290 -11.71031 -11.62508 -11.48447 -11.29595 -11.11847 -10.96716 -10.65087 -10.55904 -10.51557 -10.41881 -10.30719 -10.30304 -10.04564 -9.51823 -9.50147 -9.25207 -8.89333 -8.05603 -7.43771 -6.50842 -3.92549 2.68657 3.11304 3.11624 3.18932 3.22503 3.77032 4.04939 4.09262 4.33373 4.40425 4.56647 4.72154 4.87424 4.98003 5.05906 5.11468 5.15002 5.17432 5.21534 5.23373 5.33711 5.35478 5.57261 5.67337 5.70851 5.71637 5.77760 5.80664 5.82440 5.86675 5.90260 6.02863 6.06405 6.13296 6.17463 6.19395 6.26973 6.35564 6.40958 6.43207 6.51346 6.62516 6.82333 7.35124 7.45063 7.47982 7.54270 7.57846 7.95060 8.31684 8.49934 9.07054 9.43580 9.93850 10.65487 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.002507 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.121109 B =11168.112416 C =12426.711200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 H 0.085 0.915 4 C -0.104 4.104 5 C -0.126 4.126 6 C 0.153 3.847 7 H 0.089 0.911 8 N -0.727 5.727 9 C 0.513 3.487 10 O -0.519 6.519 11 C -0.173 4.173 12 C 0.146 3.854 13 C -0.153 4.153 14 C -0.179 4.179 15 O -0.543 6.543 16 C 0.034 3.966 17 N -0.504 5.504 18 C 0.038 3.962 19 C 0.407 3.593 20 O -0.595 6.595 21 N -0.555 5.555 22 C -0.303 4.303 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.897 5.897 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.273 1.273 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.398 0.602 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.367 0.633 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.591 -11.320 10.132 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 H 0.103 0.897 4 C -0.143 4.143 5 C -0.164 4.164 6 C 0.049 3.951 7 H 0.107 0.893 8 N -0.378 5.378 9 C 0.299 3.701 10 O -0.395 6.395 11 C -0.213 4.213 12 C 0.104 3.896 13 C -0.210 4.210 14 C -0.237 4.237 15 O -0.347 6.347 16 C -0.094 4.094 17 N -0.228 5.228 18 C -0.094 4.094 19 C 0.192 3.808 20 O -0.482 6.482 21 N -0.190 5.190 22 C -0.433 4.433 23 H 0.119 0.881 24 C -0.178 4.178 25 N -0.538 5.538 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.232 0.768 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.213 0.787 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.113 0.887 50 H 0.105 0.895 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.114 -12.634 10.821 19.468 hybrid contribution 0.747 2.598 -1.012 2.886 sum 10.861 -10.037 9.808 17.746 Atomic orbital electron populations 1.21866 0.95161 1.01696 1.01488 1.21910 0.94720 0.98916 0.89151 0.89739 1.21535 0.94579 1.01015 0.97127 1.21901 0.96277 1.00667 0.97591 1.20883 0.78235 1.01018 0.94984 0.89281 1.46113 1.07429 1.29298 1.54992 1.20381 0.89344 0.81601 0.78758 1.90678 1.72176 1.35112 1.41513 1.22504 0.93634 1.01310 1.03862 1.20882 0.91746 0.94559 0.82375 1.21993 1.05131 0.94895 0.98944 1.22530 0.95737 1.02573 1.02833 1.86716 1.79103 1.45423 1.23506 1.22427 0.88864 1.01644 0.96482 1.62356 1.06290 1.52514 1.01636 1.22117 1.00998 0.92639 0.93610 1.21086 0.86349 0.89052 0.84267 1.90392 1.44300 1.71582 1.41970 1.42061 1.46683 1.13016 1.17281 1.19644 1.31210 0.88409 1.04050 0.88057 1.25287 0.96744 1.00374 0.95359 1.69593 1.37515 1.38247 1.08449 0.85933 0.79104 0.81768 0.77512 1.19908 1.20879 1.19880 0.92350 0.92658 0.92597 0.91765 0.91610 0.91977 0.91912 0.76803 0.88194 0.88849 0.92067 0.92388 0.88892 0.92351 0.91496 0.91511 0.78652 0.91492 0.90257 0.88687 0.89536 0.77369 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.52 37.16 0.32 -1.76 16 2 C 0.06 0.97 2.05 -67.72 -0.14 0.83 16 3 H 0.08 1.65 5.69 -51.93 -0.30 1.36 16 4 C -0.10 -1.46 5.37 -26.65 -0.14 -1.60 16 5 C -0.13 -1.78 5.58 -26.61 -0.15 -1.93 16 6 C 0.15 2.16 2.61 -67.85 -0.18 1.98 16 7 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 8 N -0.73 -8.63 5.08 -53.73 -0.27 -8.90 16 9 C 0.51 6.22 7.35 -10.99 -0.08 6.14 16 10 O -0.52 -8.17 12.62 -12.71 -0.16 -8.33 16 11 C -0.17 -1.44 4.95 -27.89 -0.14 -1.58 16 12 C 0.15 1.33 0.98 -90.62 -0.09 1.24 16 13 C -0.15 -1.58 8.52 37.16 0.32 -1.26 16 14 C -0.18 -1.18 8.82 37.16 0.33 -0.85 16 15 O -0.54 -5.94 11.88 -53.50 -0.64 -6.58 16 16 C 0.03 0.54 4.47 -3.83 -0.02 0.52 16 17 N -0.50 -8.14 4.69 -228.12 -1.07 -9.21 16 18 C 0.04 0.65 5.45 -4.97 -0.03 0.63 16 19 C 0.41 8.88 7.18 -10.99 -0.08 8.80 16 20 O -0.59 -14.39 11.22 5.54 0.06 -14.32 16 21 N -0.56 -13.39 5.29 -10.96 -0.06 -13.44 16 22 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 23 H 0.10 2.83 7.16 -52.49 -0.38 2.46 16 24 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 25 N -0.90 -23.72 13.05 55.50 0.72 -22.99 16 26 Si 0.93 20.41 29.55 -169.99 -5.02 15.38 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 29 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.87 6.65 -51.93 -0.35 0.52 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.24 5.51 -51.93 -0.29 0.95 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.37 2.64 9.04 45.56 0.41 3.05 16 47 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 48 H 0.08 1.47 5.68 -51.93 -0.29 1.17 16 49 H 0.10 1.51 6.10 -51.93 -0.32 1.19 16 50 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 52 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -31.57 402.07 -8.74 -40.30 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: -8.04 Total: 18.56 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.32 Total: 3.47 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.68 Total: -54.55 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.73 Total: -29.23 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.57 -8.74 -40.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132009610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.849 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds