Wall clock time and date at job start Wed Apr 1 2020 00:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46642 * 2 1 4 4 C 1.53035 * 109.45681 * 119.97435 * 2 1 3 5 5 C 1.53113 * 109.28360 * 179.18789 * 4 2 1 6 6 C 1.53121 * 109.15972 * 302.34652 * 5 4 2 7 7 H 1.09004 * 109.49930 * 297.71071 * 6 5 4 8 8 N 1.46500 * 109.50290 * 177.63555 * 6 5 4 9 9 C 1.34771 * 120.00506 * 84.99791 * 8 6 5 10 10 O 1.21285 * 119.99558 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00397 * 180.02562 * 9 8 6 12 12 C 1.52993 * 109.47145 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47901 * 59.99599 * 12 11 9 14 14 C 1.53005 * 109.47044 * 180.02562 * 12 11 9 15 15 O 1.42905 * 109.46890 * 299.99457 * 12 11 9 16 16 C 1.53037 * 109.27795 * 57.65294 * 6 5 4 17 17 N 1.46849 * 109.52173 * 300.81777 * 16 6 5 18 18 C 1.46906 * 110.99790 * 185.83984 * 17 16 6 19 19 C 1.50699 * 109.47119 * 300.41536 * 18 17 16 20 20 O 1.21297 * 120.00132 * 354.32928 * 19 18 17 21 21 N 1.34773 * 119.99829 * 174.06027 * 19 18 17 22 22 C 1.37097 * 120.00030 * 180.27132 * 21 19 18 23 23 H 1.07995 * 120.00253 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99988 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00367 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99959 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47300 * 59.99387 * 26 24 22 28 28 H 1.48500 * 109.47140 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.46968 * 299.99802 * 26 24 22 30 30 H 1.08992 * 109.47379 * 173.13515 * 1 2 3 31 31 H 1.09003 * 109.46671 * 293.13432 * 1 2 3 32 32 H 1.09001 * 109.47242 * 53.13013 * 1 2 3 33 33 H 1.09002 * 109.50001 * 299.13099 * 4 2 1 34 34 H 1.09007 * 109.50256 * 59.20402 * 4 2 1 35 35 H 1.09004 * 109.51915 * 62.24561 * 5 4 2 36 36 H 1.08996 * 109.52229 * 182.37516 * 5 4 2 37 37 H 0.97009 * 119.99758 * 264.99701 * 8 6 5 38 38 H 1.09000 * 109.46860 * 300.00081 * 11 9 8 39 39 H 1.08995 * 109.47076 * 59.99349 * 11 9 8 40 40 H 1.09000 * 109.46739 * 59.99859 * 13 12 11 41 41 H 1.08997 * 109.47741 * 179.97438 * 13 12 11 42 42 H 1.09002 * 109.46750 * 300.00462 * 13 12 11 43 43 H 1.08994 * 109.47550 * 59.99692 * 14 12 11 44 44 H 1.09002 * 109.47232 * 179.97438 * 14 12 11 45 45 H 1.09002 * 109.46719 * 299.98854 * 14 12 11 46 46 H 0.96697 * 114.00246 * 300.00087 * 15 12 11 47 47 H 1.09000 * 109.46132 * 180.81007 * 16 6 5 48 48 H 1.08994 * 109.46594 * 60.83904 * 16 6 5 49 49 H 1.08993 * 109.46913 * 180.41321 * 18 17 16 50 50 H 1.09000 * 109.46995 * 60.41285 * 18 17 16 51 51 H 0.97006 * 120.00307 * 0.27463 * 21 19 18 52 52 H 0.96993 * 120.00846 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7364 1.2358 6 6 4.0545 -1.4192 -0.0465 7 1 3.7120 -2.4540 -0.0592 8 7 5.5184 -1.3880 -0.0949 9 6 6.2339 -2.3439 0.5300 10 8 5.6659 -3.2304 1.1321 11 6 7.7398 -2.3114 0.4807 12 6 8.3014 -3.5002 1.2631 13 6 7.7988 -4.8041 0.6403 14 6 9.8303 -3.4668 1.2136 15 8 7.8676 -3.4234 2.6226 16 6 3.4865 -0.6780 -1.2589 17 7 2.0192 -0.6919 -1.1993 18 6 1.4374 -0.1106 -2.4166 19 6 1.9098 1.3123 -2.5691 20 8 2.5731 1.8282 -1.6944 21 7 1.5998 2.0098 -3.6798 22 6 2.0341 3.3024 -3.8211 23 1 2.6244 3.7620 -3.0421 24 6 1.7141 4.0218 -4.9660 25 7 0.9954 3.4629 -5.9137 26 14 2.3065 5.7828 -5.1588 27 1 3.7907 5.8129 -5.1193 28 1 1.8353 6.3241 -6.4588 29 1 1.7651 6.6112 -4.0517 30 1 -0.3634 -1.0202 -0.1228 31 1 -0.3633 0.4038 0.9451 32 1 -0.3634 0.6166 -0.8221 33 1 1.6893 -0.1981 2.1399 34 1 1.6649 -1.7445 1.2580 35 1 3.9456 0.2867 1.2673 36 1 3.9375 -1.2857 2.1028 37 1 5.9727 -0.6792 -0.5768 38 1 8.0707 -2.3703 -0.5562 39 1 8.0978 -1.3823 0.9241 40 1 8.1297 -4.8626 -0.3966 41 1 8.1993 -5.6510 1.1974 42 1 6.7096 -4.8276 0.6760 43 1 10.1881 -2.5379 1.6576 44 1 10.2305 -4.3135 1.7714 45 1 10.1615 -3.5252 0.1767 46 1 8.1509 -2.6206 3.0811 47 1 3.8174 -1.1704 -2.1734 48 1 3.8405 0.3528 -1.2531 49 1 0.3501 -0.1266 -2.3430 50 1 1.7516 -0.6925 -3.2831 51 1 1.0692 1.5973 -4.3794 52 1 0.7723 3.9648 -6.7131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132009610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:29 Heat of formation + Delta-G solvation = -151.815456 kcal Electronic energy + Delta-G solvation = -31331.942732 eV Core-core repulsion = 27136.971350 eV Total energy + Delta-G solvation = -4194.971382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52377 -40.81352 -39.18393 -38.27888 -36.16604 -35.67642 -33.89394 -33.60601 -33.25128 -32.34632 -29.39403 -29.03460 -28.16020 -27.18121 -26.26407 -24.11817 -22.82455 -21.75162 -21.26692 -21.07524 -20.61534 -19.70462 -18.44689 -17.67959 -17.55357 -17.04177 -16.61904 -16.52549 -16.40366 -16.02571 -15.81725 -15.60442 -15.45872 -15.25193 -15.12272 -14.73647 -14.49896 -14.30133 -13.81636 -13.54345 -13.42622 -13.24261 -13.08498 -13.05664 -12.96873 -12.89211 -12.77906 -12.69353 -12.56389 -12.44914 -12.43200 -12.15562 -11.93130 -11.81357 -11.73896 -11.63572 -11.34113 -11.24641 -11.04610 -10.94113 -10.47344 -9.99309 -9.96320 -8.99738 -8.45856 -5.95729 1.37071 1.40292 1.50470 1.75467 2.01729 2.13951 2.28167 3.04912 3.20280 3.25765 3.41953 3.67406 3.77782 3.84681 3.94442 3.99273 4.08232 4.09565 4.27098 4.40355 4.45234 4.47316 4.53314 4.59410 4.60970 4.63807 4.65705 4.75539 4.78257 4.84095 4.93412 4.94563 5.02986 5.03691 5.05234 5.11253 5.18664 5.21085 5.25197 5.30336 5.39166 5.42502 5.53994 5.60166 5.91679 6.06743 6.15051 6.58244 6.63404 6.97720 7.11459 7.37853 7.55449 8.09508 8.69188 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.002507 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.121109 B =11168.112416 C =12426.711200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.061 3.939 3 H 0.047 0.953 4 C -0.099 4.099 5 C -0.119 4.119 6 C 0.164 3.836 7 H 0.076 0.924 8 N -0.723 5.723 9 C 0.510 3.490 10 O -0.558 6.558 11 C -0.165 4.165 12 C 0.141 3.859 13 C -0.154 4.154 14 C -0.171 4.171 15 O -0.571 6.571 16 C 0.042 3.958 17 N -0.497 5.497 18 C 0.046 3.954 19 C 0.412 3.588 20 O -0.618 6.618 21 N -0.570 5.570 22 C -0.330 4.330 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.273 1.273 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.408 0.592 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.079 0.921 46 H 0.381 0.619 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.113 0.887 50 H 0.106 0.894 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.600 -11.459 10.125 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.047 4.047 3 H 0.065 0.935 4 C -0.137 4.137 5 C -0.158 4.158 6 C 0.059 3.941 7 H 0.094 0.906 8 N -0.375 5.375 9 C 0.298 3.702 10 O -0.436 6.436 11 C -0.205 4.205 12 C 0.100 3.900 13 C -0.211 4.211 14 C -0.229 4.229 15 O -0.378 6.378 16 C -0.087 4.087 17 N -0.220 5.220 18 C -0.085 4.085 19 C 0.199 3.801 20 O -0.506 6.506 21 N -0.206 5.206 22 C -0.460 4.460 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.813 3.187 27 H -0.196 1.196 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.243 0.757 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.229 0.771 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.131 0.869 50 H 0.124 0.876 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.140 -12.770 10.817 20.104 hybrid contribution 0.438 2.568 -0.925 2.764 sum 11.579 -10.202 9.892 18.330 Atomic orbital electron populations 1.21836 0.93712 1.02463 1.01758 1.21881 0.95922 0.97005 0.89858 0.93476 1.21510 0.94296 1.01246 0.96644 1.21826 0.96545 0.99901 0.97508 1.20617 0.79705 0.99687 0.94122 0.90605 1.46073 1.06503 1.29750 1.55134 1.21090 0.90941 0.80560 0.77614 1.90677 1.73267 1.36505 1.43130 1.22542 0.90273 1.02226 1.05449 1.20996 0.93409 0.93964 0.81620 1.21993 1.02930 0.95925 1.00302 1.22441 0.93359 1.03228 1.03825 1.86678 1.79788 1.46658 1.24634 1.22338 0.88635 1.00154 0.97582 1.62453 1.06533 1.51646 1.01409 1.22193 1.02046 0.89440 0.94870 1.22019 0.84702 0.90500 0.82900 1.90403 1.44895 1.72714 1.42543 1.42133 1.47636 1.12647 1.18211 1.19593 1.32284 0.89940 1.04217 0.90270 1.26014 0.96648 1.03822 0.94755 1.69659 1.38067 1.39514 1.08748 0.85039 0.78629 0.77297 0.77699 1.19612 1.19708 1.19874 0.90753 0.91193 0.94079 0.90390 0.90911 0.92973 0.92097 0.75669 0.85889 0.86313 0.90244 0.92774 0.92162 0.90753 0.92032 0.90157 0.77073 0.90955 0.93022 0.86919 0.87592 0.77128 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.52 71.98 0.61 -3.22 16 2 C 0.06 1.93 2.05 44.94 0.09 2.02 16 3 H 0.05 1.87 5.69 -2.39 -0.01 1.86 16 4 C -0.10 -2.66 5.37 30.64 0.16 -2.50 16 5 C -0.12 -3.33 5.58 30.67 0.17 -3.16 16 6 C 0.16 4.57 2.61 45.04 0.12 4.69 16 7 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 8 N -0.72 -16.61 5.08 -442.28 -2.25 -18.85 16 9 C 0.51 11.90 7.35 87.66 0.64 12.54 16 10 O -0.56 -17.62 12.62 14.42 0.18 -17.44 16 11 C -0.17 -2.37 4.95 29.84 0.15 -2.22 16 12 C 0.14 2.33 0.98 -10.80 -0.01 2.32 16 13 C -0.15 -3.10 8.52 71.98 0.61 -2.49 16 14 C -0.17 -1.79 8.82 71.98 0.63 -1.16 16 15 O -0.57 -12.02 11.88 -131.52 -1.56 -13.58 16 16 C 0.04 1.30 4.47 86.33 0.39 1.68 16 17 N -0.50 -15.68 4.69 -875.64 -4.11 -19.79 16 18 C 0.05 1.54 5.45 85.56 0.47 2.01 16 19 C 0.41 18.16 7.18 87.66 0.63 18.79 16 20 O -0.62 -30.60 11.22 -3.08 -0.03 -30.64 16 21 N -0.57 -27.91 5.29 -306.99 -1.62 -29.53 16 22 C -0.33 -18.00 9.68 84.04 0.81 -17.19 16 23 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.54 13.05 21.66 0.28 -48.26 16 26 Si 0.99 41.75 29.55 68.60 2.03 43.78 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.23 6.65 -2.39 -0.02 1.22 16 33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.41 7.84 8.60 -92.70 -0.80 7.04 16 38 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.64 5.51 -2.39 -0.01 1.62 16 43 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.38 5.02 9.04 -74.06 -0.67 4.35 16 47 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 48 H 0.05 1.94 5.68 -2.39 -0.01 1.93 16 49 H 0.11 3.42 6.10 -2.39 -0.01 3.41 16 50 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 51 H 0.40 18.66 7.90 -92.70 -0.73 17.92 16 52 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -69.96 402.07 -2.38 -72.34 By element: Atomic # 1 Polarization: 51.27 SS G_CDS: -1.25 Total: 50.02 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.95 Total: 11.95 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -7.70 Total: -116.44 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -1.41 Total: -61.66 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -69.96 -2.38 -72.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132009610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.471 kcal (2) G-P(sol) polarization free energy of solvation -69.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds