Wall clock time and date at job start Wed Apr 1 2020 00:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00235 * 2 1 4 4 C 1.52998 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47029 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99566 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00077 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.63559 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77719 * 126.41200 * 8 7 5 10 10 C 1.53040 * 109.31395 * 54.63974 * 9 8 7 11 11 H 1.08997 * 109.46136 * 178.61621 * 10 9 8 12 12 C 1.53001 * 109.44708 * 58.64359 * 10 9 8 13 13 C 1.53042 * 109.53464 * 298.63540 * 10 9 8 14 14 H 1.09006 * 109.49902 * 301.37867 * 13 10 9 15 15 C 1.53002 * 109.49452 * 181.31792 * 13 10 9 16 16 N 1.46906 * 109.47053 * 174.99998 * 15 13 10 17 17 C 1.46895 * 110.99789 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47030 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99926 * 0.02562 * 18 17 16 20 20 N 1.34767 * 120.00169 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00058 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00073 * 0.02562 * 21 20 18 23 23 C 1.38957 * 120.00049 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99604 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99778 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47161 * 60.00224 * 25 23 21 27 27 H 1.48506 * 109.46664 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47253 * 299.99863 * 25 23 21 29 29 C 1.46932 * 120.63080 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.47021 * 59.99710 * 1 2 3 31 31 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47458 * 300.00067 * 1 2 3 33 33 H 1.09004 * 109.46567 * 60.00122 * 3 2 1 34 34 H 1.08991 * 109.46722 * 299.99996 * 3 2 1 35 35 H 1.08997 * 109.47235 * 60.00307 * 4 3 2 36 36 H 1.09005 * 109.47402 * 299.99812 * 4 3 2 37 37 H 1.09007 * 109.58306 * 6.62906 * 8 7 5 38 38 H 1.08999 * 109.58688 * 246.20209 * 8 7 5 39 39 H 1.09002 * 109.49790 * 294.68349 * 9 8 7 40 40 H 1.09004 * 109.52259 * 174.60810 * 9 8 7 41 41 H 1.08996 * 109.47461 * 299.94300 * 12 10 9 42 42 H 1.09000 * 109.46816 * 59.94530 * 12 10 9 43 43 H 1.09001 * 109.46708 * 179.97438 * 12 10 9 44 44 H 1.08992 * 109.47056 * 54.99669 * 15 13 10 45 45 H 1.09004 * 109.47006 * 294.99785 * 15 13 10 46 46 H 1.00899 * 110.99484 * 303.95475 * 16 15 13 47 47 H 1.08996 * 109.47424 * 299.99656 * 17 16 15 48 48 H 1.09002 * 109.47411 * 60.00282 * 17 16 15 49 49 H 0.97000 * 120.00220 * 0.02562 * 20 18 17 50 50 H 0.97005 * 119.99191 * 179.97438 * 24 23 21 51 51 H 1.08994 * 109.58572 * 113.79991 * 29 7 5 52 52 H 1.08998 * 109.58536 * 353.37170 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5612 0.0013 6 8 3.4356 3.5424 0.0008 7 7 5.4888 2.7020 0.0014 8 6 6.3655 1.5229 0.0015 9 6 7.3507 1.6409 -1.1657 10 6 8.0928 2.9758 -1.0687 11 1 8.8121 3.0516 -1.8841 12 6 8.8298 3.0528 0.2700 13 6 7.0894 4.1274 -1.1652 14 1 6.5467 4.0590 -2.1081 15 6 7.8357 5.4615 -1.1011 16 7 6.8877 6.5635 -1.3136 17 6 7.5702 7.8631 -1.2581 18 6 6.5682 8.9666 -1.4804 19 8 5.4004 8.6969 -1.6664 20 7 6.9696 10.2531 -1.4717 21 6 6.0580 11.2570 -1.6735 22 1 5.0181 11.0169 -1.8390 23 6 6.4719 12.5835 -1.6650 24 7 7.7373 12.8755 -1.4640 25 14 5.2299 13.9512 -1.9406 26 1 4.1878 13.8938 -0.8842 27 1 5.9200 15.2650 -1.8851 28 1 4.5948 13.7822 -3.2722 29 6 6.1013 4.0376 0.0026 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6437 0.8909 37 1 5.7649 0.6210 -0.1171 38 1 6.9160 1.4769 0.9411 39 1 6.8052 1.5956 -2.1083 40 1 8.0683 0.8216 -1.1209 41 1 8.1106 2.9776 1.0855 42 1 9.5445 2.2327 0.3389 43 1 9.3589 4.0033 0.3392 44 1 8.6018 5.4868 -1.8759 45 1 8.3044 5.5690 -0.1229 46 1 6.3928 6.4515 -2.1857 47 1 8.0367 7.9870 -0.2808 48 1 8.3348 7.9054 -2.0338 49 1 7.9035 10.4688 -1.3226 50 1 8.0263 13.8015 -1.4585 51 1 6.6302 4.1961 0.9423 52 1 5.3263 4.7950 -0.1153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132581463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:34 Heat of formation + Delta-G solvation = -125.268711 kcal Electronic energy + Delta-G solvation = -30164.095394 eV Core-core repulsion = 25970.275165 eV Total energy + Delta-G solvation = -4193.820229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.68868 -38.79175 -38.16513 -37.79884 -35.58396 -34.00064 -33.62333 -32.28554 -31.36459 -31.06376 -28.27403 -27.43718 -26.65927 -25.35744 -24.90512 -23.64339 -23.20708 -21.78834 -19.94843 -19.15462 -18.40456 -17.83152 -17.63622 -16.60163 -16.39627 -16.22488 -15.98900 -15.47607 -15.30748 -15.13120 -15.04601 -14.91908 -14.49748 -14.12318 -13.97101 -13.79652 -13.58847 -13.40635 -13.03994 -12.91698 -12.69025 -12.44291 -12.25040 -12.08451 -11.91602 -11.74182 -11.67191 -11.47635 -11.46253 -11.37197 -11.30057 -11.01079 -10.94482 -10.59101 -10.49342 -10.40761 -10.17140 -9.97711 -9.88209 -9.45819 -8.72919 -8.40666 -8.00409 -7.91370 -6.37879 -3.78344 2.49402 2.69249 3.23459 3.28361 3.33466 3.52030 3.95759 4.08640 4.27803 4.34596 4.44904 4.52775 4.66689 4.72202 4.74281 4.83230 4.95538 5.05285 5.06032 5.06605 5.15556 5.17866 5.24520 5.29584 5.30213 5.33510 5.35510 5.41753 5.47872 5.51903 5.53176 5.61451 5.71798 5.73629 5.76624 5.86029 5.89344 5.98981 6.02469 6.16806 6.28544 6.31425 6.40740 6.80166 7.25146 7.25349 7.59017 7.69480 8.04979 8.10615 8.65940 9.22196 9.58778 10.10868 10.79890 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.002179 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.819342 B =12847.697973 C =15057.553386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.074 3.926 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.531 6.531 7 N -0.612 5.612 8 C 0.103 3.897 9 C -0.129 4.129 10 C -0.087 4.087 11 H 0.073 0.927 12 C -0.155 4.155 13 C -0.092 4.092 14 H 0.074 0.926 15 C 0.065 3.935 16 N -0.669 5.669 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.122 3.878 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.030 0.970 45 H 0.075 0.925 46 H 0.349 0.651 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.068 0.932 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -28.429 3.212 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.317 6.317 3 C -0.003 4.003 4 C -0.177 4.177 5 C 0.303 3.697 6 O -0.407 6.407 7 N -0.346 5.346 8 C -0.020 4.020 9 C -0.167 4.167 10 C -0.106 4.106 11 H 0.091 0.909 12 C -0.212 4.212 13 C -0.112 4.112 14 H 0.092 0.908 15 C -0.065 4.065 16 N -0.301 5.301 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.464 6.464 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C 0.000 4.000 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.093 0.907 46 H 0.169 0.831 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.082 -28.016 3.758 28.267 hybrid contribution 0.537 1.079 -0.916 1.514 sum 0.455 -26.937 2.842 27.090 Atomic orbital electron populations 1.22734 0.80536 1.02657 1.00380 1.87773 1.20135 1.28143 1.95618 1.22193 0.91888 0.84115 1.02059 1.21494 0.95469 0.95542 1.05243 1.20367 0.82064 0.90982 0.76310 1.90786 1.60245 1.40647 1.49043 1.48133 1.05172 1.07792 1.73460 1.21811 0.92868 0.88098 0.99243 1.21937 0.98267 0.97819 0.98724 1.21111 0.96783 0.94045 0.98695 0.90853 1.22001 1.00132 1.02016 0.97013 1.21505 0.96087 0.93923 0.99656 0.90784 1.22015 0.93568 0.89826 1.01115 1.60069 1.27328 1.00027 1.42676 1.21655 0.95382 0.89566 1.01486 1.19834 0.89392 0.83632 0.84555 1.90542 1.18509 1.82963 1.54397 1.41853 1.11166 1.04243 1.62926 1.19662 0.92588 0.84853 1.45687 0.87997 1.25257 0.96808 0.98499 0.97447 1.69609 1.14738 1.20138 1.49981 0.85916 0.79885 0.79274 0.79134 1.19876 1.21017 1.19948 1.21690 0.97206 0.83577 0.97497 0.93859 0.89589 0.93884 0.92258 0.92200 0.88182 0.88222 0.89794 0.90926 0.91392 0.90580 0.92135 0.92751 0.92095 0.95219 0.90691 0.83148 0.89662 0.93996 0.77503 0.91892 0.91420 0.87243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.40 -3.91 10.70 -35.23 -0.38 -4.29 16 3 C 0.07 0.75 5.23 37.16 0.19 0.94 16 4 C -0.14 -1.20 4.42 -27.88 -0.12 -1.32 16 5 C 0.52 6.25 7.70 -10.99 -0.08 6.17 16 6 O -0.53 -8.99 15.40 5.55 0.09 -8.91 16 7 N -0.61 -6.31 2.97 -172.74 -0.51 -6.82 16 8 C 0.10 0.67 5.87 -3.71 -0.02 0.65 16 9 C -0.13 -0.80 5.62 -26.61 -0.15 -0.95 16 10 C -0.09 -0.66 2.71 -90.58 -0.25 -0.91 16 11 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 12 C -0.15 -1.07 8.11 37.16 0.30 -0.77 16 13 C -0.09 -0.96 2.26 -90.47 -0.20 -1.17 16 14 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 15 C 0.06 0.77 4.61 -3.82 -0.02 0.75 16 16 N -0.67 -10.93 5.70 -115.06 -0.66 -11.59 16 17 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 18 C 0.44 10.69 7.82 -10.99 -0.09 10.60 16 19 O -0.58 -16.33 15.78 5.54 0.09 -16.24 16 20 N -0.56 -14.65 5.29 -10.96 -0.06 -14.71 16 21 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.94 13.05 55.50 0.72 -24.21 16 25 Si 0.93 21.53 29.55 -169.99 -5.02 16.50 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.12 1.48 5.07 -3.68 -0.02 1.46 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.10 0.71 7.69 -51.93 -0.40 0.31 16 36 H 0.10 0.69 7.94 -51.93 -0.41 0.28 16 37 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 38 H 0.07 0.42 6.69 -51.93 -0.35 0.07 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.44 4.98 -51.93 -0.26 0.18 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.85 6.73 -51.93 -0.35 0.50 16 46 H 0.35 6.06 8.43 -39.29 -0.33 5.73 16 47 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 50 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 51 H 0.07 0.78 6.69 -51.93 -0.35 0.43 16 52 H 0.11 1.80 6.79 -51.93 -0.35 1.44 16 LS Contribution 409.12 15.07 6.17 6.17 Total: -1.00 -34.67 409.12 -7.95 -42.63 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -8.77 Total: 11.94 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 0.39 Total: 9.54 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.50 Total: -57.33 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.20 Total: -29.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.67 -7.95 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132581463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.642 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds