Wall clock time and date at job start Wed Apr 1 2020 00:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00235 * 2 1 4 4 C 1.52998 * 109.46843 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47029 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99566 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00077 * 180.02562 * 5 4 3 8 8 C 1.46927 * 120.63559 * 359.97438 * 7 5 4 9 9 C 1.53191 * 108.77719 * 126.41200 * 8 7 5 10 10 C 1.53040 * 109.31395 * 54.63974 * 9 8 7 11 11 H 1.08997 * 109.46136 * 178.61621 * 10 9 8 12 12 C 1.53001 * 109.44708 * 58.64359 * 10 9 8 13 13 C 1.53042 * 109.53464 * 298.63540 * 10 9 8 14 14 H 1.09006 * 109.49902 * 301.37867 * 13 10 9 15 15 C 1.53002 * 109.49452 * 181.31792 * 13 10 9 16 16 N 1.46906 * 109.47053 * 174.99998 * 15 13 10 17 17 C 1.46895 * 110.99789 * 179.97438 * 16 15 13 18 18 C 1.50704 * 109.47030 * 179.97438 * 17 16 15 19 19 O 1.21294 * 119.99926 * 0.02562 * 18 17 16 20 20 N 1.34767 * 120.00169 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00058 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00073 * 0.02562 * 21 20 18 23 23 C 1.38957 * 120.00049 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99604 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99778 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47161 * 60.00224 * 25 23 21 27 27 H 1.48506 * 109.46664 * 180.02562 * 25 23 21 28 28 H 1.48494 * 109.47253 * 299.99863 * 25 23 21 29 29 C 1.46932 * 120.63080 * 180.02562 * 7 5 4 30 30 H 1.08999 * 109.47021 * 59.99710 * 1 2 3 31 31 H 1.09001 * 109.47436 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47458 * 300.00067 * 1 2 3 33 33 H 1.09004 * 109.46567 * 60.00122 * 3 2 1 34 34 H 1.08991 * 109.46722 * 299.99996 * 3 2 1 35 35 H 1.08997 * 109.47235 * 60.00307 * 4 3 2 36 36 H 1.09005 * 109.47402 * 299.99812 * 4 3 2 37 37 H 1.09007 * 109.58306 * 6.62906 * 8 7 5 38 38 H 1.08999 * 109.58688 * 246.20209 * 8 7 5 39 39 H 1.09002 * 109.49790 * 294.68349 * 9 8 7 40 40 H 1.09004 * 109.52259 * 174.60810 * 9 8 7 41 41 H 1.08996 * 109.47461 * 299.94300 * 12 10 9 42 42 H 1.09000 * 109.46816 * 59.94530 * 12 10 9 43 43 H 1.09001 * 109.46708 * 179.97438 * 12 10 9 44 44 H 1.08992 * 109.47056 * 54.99669 * 15 13 10 45 45 H 1.09004 * 109.47006 * 294.99785 * 15 13 10 46 46 H 1.00899 * 110.99484 * 303.95475 * 16 15 13 47 47 H 1.08996 * 109.47424 * 299.99656 * 17 16 15 48 48 H 1.09002 * 109.47411 * 60.00282 * 17 16 15 49 49 H 0.97000 * 120.00220 * 0.02562 * 20 18 17 50 50 H 0.97005 * 119.99191 * 179.97438 * 24 23 21 51 51 H 1.08994 * 109.58572 * 113.79991 * 29 7 5 52 52 H 1.08998 * 109.58536 * 353.37170 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1485 2.5612 0.0013 6 8 3.4356 3.5424 0.0008 7 7 5.4888 2.7020 0.0014 8 6 6.3655 1.5229 0.0015 9 6 7.3507 1.6409 -1.1657 10 6 8.0928 2.9758 -1.0687 11 1 8.8121 3.0516 -1.8841 12 6 8.8298 3.0528 0.2700 13 6 7.0894 4.1274 -1.1652 14 1 6.5467 4.0590 -2.1081 15 6 7.8357 5.4615 -1.1011 16 7 6.8877 6.5635 -1.3136 17 6 7.5702 7.8631 -1.2581 18 6 6.5682 8.9666 -1.4804 19 8 5.4004 8.6969 -1.6664 20 7 6.9696 10.2531 -1.4717 21 6 6.0580 11.2570 -1.6735 22 1 5.0181 11.0169 -1.8390 23 6 6.4719 12.5835 -1.6650 24 7 7.7373 12.8755 -1.4640 25 14 5.2299 13.9512 -1.9406 26 1 4.1878 13.8938 -0.8842 27 1 5.9200 15.2650 -1.8851 28 1 4.5948 13.7822 -3.2722 29 6 6.1013 4.0376 0.0026 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8463 -0.8899 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6437 0.8909 37 1 5.7649 0.6210 -0.1171 38 1 6.9160 1.4769 0.9411 39 1 6.8052 1.5956 -2.1083 40 1 8.0683 0.8216 -1.1209 41 1 8.1106 2.9776 1.0855 42 1 9.5445 2.2327 0.3389 43 1 9.3589 4.0033 0.3392 44 1 8.6018 5.4868 -1.8759 45 1 8.3044 5.5690 -0.1229 46 1 6.3928 6.4515 -2.1857 47 1 8.0367 7.9870 -0.2808 48 1 8.3348 7.9054 -2.0338 49 1 7.9035 10.4688 -1.3226 50 1 8.0263 13.8015 -1.4585 51 1 6.6302 4.1961 0.9423 52 1 5.3263 4.7950 -0.1153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132581463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:29 Heat of formation + Delta-G solvation = -151.999143 kcal Electronic energy + Delta-G solvation = -30165.254513 eV Core-core repulsion = 25970.275165 eV Total energy + Delta-G solvation = -4194.979347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.53664 -40.19652 -39.50766 -38.61953 -36.81545 -35.89469 -34.69274 -33.30742 -33.04808 -32.13259 -29.16591 -28.43541 -27.56481 -26.65999 -25.85330 -24.95852 -24.04874 -22.65953 -21.22483 -20.62189 -19.92237 -19.15711 -18.43503 -17.81389 -17.37795 -17.26184 -17.10685 -16.64305 -16.39123 -16.21950 -16.08796 -15.80102 -15.77549 -15.65726 -15.22473 -14.85335 -14.57254 -14.53637 -14.15848 -13.98627 -13.77106 -13.51474 -13.34309 -13.26926 -13.03276 -12.86999 -12.66957 -12.59117 -12.46048 -12.43523 -12.38558 -12.16299 -12.13681 -11.96233 -11.70111 -11.52784 -11.34132 -11.25757 -10.84288 -10.71457 -10.36630 -10.03625 -9.57803 -9.29415 -8.48489 -5.97303 1.37952 1.39451 1.50728 1.57520 1.88460 2.03561 2.27740 2.81933 2.91378 3.18403 3.48815 3.59684 3.75310 3.84559 3.92266 3.98944 4.05726 4.13119 4.26152 4.30805 4.36496 4.44683 4.48091 4.49213 4.51035 4.53231 4.57242 4.59884 4.66876 4.72776 4.76803 4.78641 4.81139 4.83379 4.94654 4.98111 5.06218 5.13510 5.21681 5.31944 5.38593 5.41399 5.56129 5.61167 5.88259 6.08946 6.10799 6.36361 6.41868 6.58696 7.10805 7.15046 7.54166 8.10589 8.68621 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.002179 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.819342 B =12847.697973 C =15057.553386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.076 3.924 4 C -0.125 4.125 5 C 0.507 3.493 6 O -0.593 6.593 7 N -0.607 5.607 8 C 0.096 3.904 9 C -0.125 4.125 10 C -0.082 4.082 11 H 0.083 0.917 12 C -0.152 4.152 13 C -0.083 4.083 14 H 0.056 0.944 15 C 0.068 3.932 16 N -0.687 5.687 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.075 0.925 23 C -0.013 4.013 24 N -0.918 5.918 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.267 1.267 28 H -0.272 1.272 29 C 0.125 3.875 30 H 0.044 0.956 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.339 0.661 47 H 0.105 0.895 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.073 0.927 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.133 -30.709 3.448 31.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.001 4.001 4 C -0.164 4.164 5 C 0.296 3.704 6 O -0.474 6.474 7 N -0.339 5.339 8 C -0.025 4.025 9 C -0.163 4.163 10 C -0.101 4.101 11 H 0.101 0.899 12 C -0.209 4.209 13 C -0.103 4.103 14 H 0.075 0.925 15 C -0.061 4.061 16 N -0.319 5.319 17 C -0.065 4.065 18 C 0.222 3.778 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.559 5.559 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.197 1.197 29 C 0.003 3.997 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.157 0.843 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.092 0.908 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.028 -30.341 4.004 30.671 hybrid contribution -0.093 1.738 -0.973 1.994 sum 1.934 -28.603 3.031 28.828 Atomic orbital electron populations 1.22947 0.79350 1.04167 1.00625 1.87747 1.21509 1.27555 1.95609 1.22094 0.93119 0.84214 1.00687 1.21450 0.94078 0.93424 1.07485 1.21053 0.82400 0.91683 0.75258 1.90761 1.61762 1.42833 1.52058 1.48244 1.05180 1.08361 1.72112 1.22175 0.92879 0.87120 1.00356 1.21948 0.98487 0.97810 0.98092 1.21102 0.96107 0.93265 0.99617 0.89908 1.21983 1.00228 1.02577 0.96125 1.21432 0.96281 0.94734 0.97874 0.92508 1.22123 0.93126 0.88766 1.02110 1.60081 1.28893 1.00614 1.42314 1.21514 0.93734 0.87928 1.03288 1.20980 0.89994 0.84362 0.82441 1.90511 1.21038 1.83741 1.55952 1.41912 1.11024 1.04634 1.63386 1.19614 0.92202 0.86481 1.48292 0.90649 1.26042 0.98786 1.00018 0.96394 1.69664 1.15775 1.21065 1.49404 0.84994 0.77670 0.76835 0.78855 1.19898 1.19158 1.19729 1.21463 0.96042 0.83643 0.98567 0.93750 0.87441 0.93593 0.93599 0.93865 0.85859 0.85612 0.87329 0.89331 0.92045 0.87596 0.92630 0.90753 0.92668 0.93487 0.89670 0.84252 0.87705 0.91418 0.76882 0.91226 0.90840 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.59 10.70 -148.98 -1.59 -9.18 16 3 C 0.08 1.56 5.23 71.98 0.38 1.93 16 4 C -0.12 -2.02 4.42 29.85 0.13 -1.88 16 5 C 0.51 12.57 7.70 87.66 0.67 13.25 16 6 O -0.59 -21.76 15.40 -3.04 -0.05 -21.80 16 7 N -0.61 -12.19 2.97 -818.81 -2.43 -14.63 16 8 C 0.10 0.96 5.87 86.36 0.51 1.47 16 9 C -0.13 -1.12 5.62 30.67 0.17 -0.95 16 10 C -0.08 -1.01 2.71 -10.77 -0.03 -1.04 16 11 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 12 C -0.15 -1.62 8.11 71.98 0.58 -1.03 16 13 C -0.08 -1.70 2.26 -10.70 -0.02 -1.72 16 14 H 0.06 1.35 8.14 -2.38 -0.02 1.34 16 15 C 0.07 1.53 4.61 86.30 0.40 1.93 16 16 N -0.69 -22.88 5.70 -517.93 -2.95 -25.83 16 17 C 0.07 2.41 6.17 85.56 0.53 2.93 16 18 C 0.43 21.75 7.82 87.66 0.69 22.44 16 19 O -0.63 -37.02 15.78 -3.07 -0.05 -37.07 16 20 N -0.57 -30.47 5.29 -306.98 -1.62 -32.09 16 21 C -0.34 -19.82 9.68 84.04 0.81 -19.01 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.44 13.05 21.67 0.28 -50.16 16 25 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 C 0.13 3.12 5.07 86.38 0.44 3.56 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 34 H 0.04 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.12 1.44 7.69 -2.39 -0.02 1.42 16 36 H 0.13 1.40 7.94 -2.38 -0.02 1.38 16 37 H 0.11 0.60 5.93 -2.38 -0.01 0.58 16 38 H 0.09 0.68 6.69 -2.39 -0.02 0.67 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.05 0.65 4.98 -2.39 -0.01 0.64 16 42 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.05 0.66 6.57 -2.39 -0.02 0.65 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.78 6.73 -2.38 -0.02 1.76 16 46 H 0.34 12.33 8.43 -89.69 -0.76 11.57 16 47 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 48 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 50 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 51 H 0.07 1.70 6.69 -2.39 -0.02 1.69 16 52 H 0.06 2.08 6.79 -2.39 -0.02 2.06 16 Total: -1.00 -80.31 409.12 0.03 -80.28 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.55 Total: 40.95 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.97 Total: 23.25 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -6.72 Total: -122.70 kcal Atomic # 8 Polarization: -66.36 SS G_CDS: -1.69 Total: -68.05 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -80.31 0.03 -80.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132581463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.718 kcal (2) G-P(sol) polarization free energy of solvation -80.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds