Wall clock time and date at job start Wed Apr 1 2020 00:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99948 * 2 1 4 4 C 1.52996 * 109.47180 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47159 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 3 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 3 8 8 C 1.46923 * 120.63273 * 0.28271 * 7 5 4 9 9 C 1.53192 * 108.77564 * 233.58447 * 8 7 5 10 10 C 1.53043 * 109.31235 * 305.36054 * 9 8 7 11 11 H 1.09005 * 109.46062 * 301.34770 * 10 9 8 12 12 C 1.53001 * 109.46046 * 181.37222 * 10 9 8 13 13 C 1.53036 * 109.53620 * 61.36579 * 10 9 8 14 14 H 1.09003 * 109.49977 * 58.58508 * 13 10 9 15 15 C 1.53000 * 109.49848 * 178.65223 * 13 10 9 16 16 N 1.46901 * 109.47340 * 184.99632 * 15 13 10 17 17 C 1.46899 * 111.00040 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47180 * 180.02562 * 17 16 15 19 19 O 1.21297 * 119.99802 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99926 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99868 * 180.02562 * 20 18 17 22 22 H 1.08008 * 120.00085 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00068 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00080 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99964 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47161 * 60.00125 * 25 23 21 27 27 H 1.48505 * 109.46895 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47184 * 299.99678 * 25 23 21 29 29 C 1.46929 * 120.63092 * 179.97438 * 7 5 4 30 30 H 1.09007 * 109.47093 * 300.00015 * 1 2 3 31 31 H 1.08994 * 109.46971 * 59.99650 * 1 2 3 32 32 H 1.08996 * 109.46704 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47053 * 60.00021 * 3 2 1 34 34 H 1.09000 * 109.47521 * 300.00363 * 3 2 1 35 35 H 1.09004 * 109.47066 * 60.00083 * 4 3 2 36 36 H 1.08994 * 109.47405 * 299.99913 * 4 3 2 37 37 H 1.09003 * 109.58523 * 353.36859 * 8 7 5 38 38 H 1.08996 * 109.59476 * 113.79560 * 8 7 5 39 39 H 1.08998 * 109.49840 * 65.31182 * 9 8 7 40 40 H 1.09001 * 109.49830 * 185.37680 * 9 8 7 41 41 H 1.09001 * 109.47029 * 60.00317 * 12 10 9 42 42 H 1.08999 * 109.46511 * 180.02562 * 12 10 9 43 43 H 1.09000 * 109.46741 * 299.99673 * 12 10 9 44 44 H 1.08998 * 109.46997 * 304.99863 * 15 13 10 45 45 H 1.09000 * 109.47001 * 64.99838 * 15 13 10 46 46 H 1.00899 * 110.99647 * 56.05023 * 16 15 13 47 47 H 1.09004 * 109.46997 * 300.00197 * 17 16 15 48 48 H 1.08997 * 109.47101 * 59.99999 * 17 16 15 49 49 H 0.97000 * 120.00247 * 359.97438 * 20 18 17 50 50 H 0.97004 * 120.00234 * 180.02562 * 24 23 21 51 51 H 1.09007 * 109.58815 * 246.20444 * 29 7 5 52 52 H 1.08999 * 109.58776 * 6.63087 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5426 -0.0004 7 7 5.4888 2.7023 0.0061 8 6 6.3654 1.5233 0.0071 9 6 7.3456 1.6387 1.1787 10 6 8.0881 2.9738 1.0879 11 1 8.6174 3.0310 0.1367 12 6 9.0925 3.0777 2.2373 13 6 7.0843 4.1251 1.1827 14 1 6.5371 4.0542 2.1228 15 6 7.8307 5.4595 1.1256 16 7 6.8817 6.5608 1.3364 17 6 7.5646 7.8606 1.2886 18 6 6.5616 8.9634 1.5091 19 8 5.3927 8.6933 1.6879 20 7 6.9632 10.2500 1.5065 21 6 6.0507 11.2533 1.7076 22 1 5.0100 11.0127 1.8676 23 6 6.4648 12.5796 1.7055 24 7 7.7309 12.8724 1.5103 25 14 5.2215 13.9467 1.9787 26 1 4.5791 13.7735 3.3064 27 1 5.9118 15.2607 1.9298 28 1 4.1850 13.8928 0.9165 29 6 6.1011 4.0379 0.0050 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 5.7644 0.6211 0.1210 38 1 6.9200 1.4793 -0.9302 39 1 6.7960 1.5912 2.1188 40 1 8.0630 0.8192 1.1349 41 1 9.8083 2.2585 2.1694 42 1 9.6211 4.0288 2.1729 43 1 8.5633 3.0202 3.1885 44 1 8.5932 5.4828 1.9041 45 1 8.3040 5.5695 0.1499 46 1 6.3827 6.4467 2.2059 47 1 8.3251 7.9003 2.0686 48 1 8.0365 7.9875 0.3143 49 1 7.8979 10.4660 1.3632 50 1 8.0201 13.7983 1.5092 51 1 6.6346 4.1946 -0.9326 52 1 5.3256 4.7955 0.1175 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132581464.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:43 Heat of formation + Delta-G solvation = -154.885812 kcal Electronic energy + Delta-G solvation = -30039.304981 eV Core-core repulsion = 25844.200459 eV Total energy + Delta-G solvation = -4195.104522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41756 -40.19406 -39.39334 -38.61130 -36.79091 -35.90527 -34.87026 -33.31469 -33.11081 -32.10484 -29.40829 -28.74249 -27.52009 -26.67078 -25.24898 -24.69014 -23.66564 -22.65921 -21.37324 -20.81844 -19.93163 -19.88507 -18.43868 -17.81634 -17.39748 -17.29772 -16.99403 -16.61177 -16.38967 -16.20471 -16.13019 -15.76533 -15.57706 -15.33108 -15.24880 -14.79001 -14.60227 -14.27662 -14.23336 -14.00155 -13.78722 -13.58959 -13.50594 -13.25304 -13.04066 -12.83787 -12.71780 -12.62816 -12.52007 -12.45429 -12.43199 -12.16563 -12.13716 -11.93902 -11.75494 -11.52657 -11.36786 -11.23126 -10.83417 -10.71592 -10.35899 -10.03524 -9.64713 -9.25956 -8.48371 -5.97238 1.37936 1.39484 1.50713 1.57230 1.88448 2.03672 2.27767 2.81876 2.91745 3.18483 3.49294 3.59463 3.75965 3.80614 3.92377 3.98756 4.04105 4.10708 4.25764 4.30866 4.37418 4.44289 4.49121 4.49910 4.51173 4.56762 4.57160 4.61428 4.70052 4.74392 4.75980 4.78482 4.82890 4.83492 4.93904 4.98557 5.07303 5.08648 5.16435 5.28015 5.38617 5.43548 5.55541 5.58903 5.88542 6.08836 6.11192 6.36524 6.41311 6.58816 7.10895 7.14720 7.54282 8.10715 8.68724 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.002184 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.555852 B =12817.977176 C =15094.793256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.076 3.924 4 C -0.125 4.125 5 C 0.507 3.493 6 O -0.593 6.593 7 N -0.609 5.609 8 C 0.098 3.902 9 C -0.125 4.125 10 C -0.081 4.081 11 H 0.086 0.914 12 C -0.148 4.148 13 C -0.081 4.081 14 H 0.056 0.944 15 C 0.065 3.935 16 N -0.687 5.687 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.918 5.918 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.267 1.267 28 H -0.274 1.274 29 C 0.124 3.876 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.339 0.661 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.073 0.927 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 -30.698 -2.906 31.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.001 4.001 4 C -0.164 4.164 5 C 0.296 3.704 6 O -0.474 6.474 7 N -0.341 5.341 8 C -0.024 4.024 9 C -0.163 4.163 10 C -0.100 4.100 11 H 0.104 0.896 12 C -0.205 4.205 13 C -0.101 4.101 14 H 0.074 0.926 15 C -0.064 4.064 16 N -0.319 5.319 17 C -0.065 4.065 18 C 0.222 3.778 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.559 5.559 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.192 1.192 28 H -0.199 1.199 29 C 0.002 3.998 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.126 0.874 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.101 0.899 46 H 0.157 0.843 47 H 0.086 0.914 48 H 0.123 0.877 49 H 0.231 0.769 50 H 0.088 0.912 51 H 0.091 0.909 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.131 -30.330 -3.463 30.601 hybrid contribution -0.113 1.732 0.963 1.985 sum 2.018 -28.598 -2.500 28.778 Atomic orbital electron populations 1.22949 0.79346 1.04169 1.00628 1.87748 1.21513 1.27548 1.95609 1.22095 0.93127 0.84217 1.00688 1.21450 0.94078 0.93414 1.07497 1.21059 0.82411 0.91688 0.75227 1.90760 1.61779 1.42836 1.52042 1.48274 1.05234 1.08427 1.72140 1.22150 0.92911 0.87126 1.00165 1.21981 0.98444 0.97757 0.98093 1.21122 0.95097 0.93290 1.00532 0.89584 1.21886 0.98716 1.02459 0.97455 1.21517 0.96137 0.94693 0.97748 0.92595 1.22166 0.93280 0.88741 1.02168 1.60081 1.28626 1.00606 1.42562 1.21514 0.93724 0.87947 1.03277 1.20986 0.90013 0.84360 0.82415 1.90512 1.20987 1.83720 1.56030 1.41914 1.10931 1.04656 1.63465 1.19612 0.92113 0.86511 1.48345 0.90653 1.26037 0.98788 1.00007 0.96400 1.69660 1.15743 1.21058 1.49456 0.84998 0.77671 0.76844 0.78857 1.19714 1.19159 1.19916 1.21558 0.96211 0.83682 0.98382 0.93743 0.93593 0.87439 0.93889 0.93579 0.85572 0.85866 0.87245 0.89354 0.92204 0.87602 0.90902 0.92544 0.93448 0.92980 0.89920 0.84281 0.91433 0.87697 0.76881 0.91225 0.90923 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -7.59 10.70 -148.98 -1.59 -9.18 16 3 C 0.08 1.56 5.23 71.98 0.38 1.93 16 4 C -0.13 -2.01 4.42 29.85 0.13 -1.88 16 5 C 0.51 12.57 7.70 87.66 0.67 13.24 16 6 O -0.59 -21.76 15.39 -3.04 -0.05 -21.81 16 7 N -0.61 -12.20 2.97 -817.98 -2.43 -14.63 16 8 C 0.10 0.95 6.34 86.36 0.55 1.50 16 9 C -0.12 -1.11 5.36 30.67 0.16 -0.95 16 10 C -0.08 -1.00 2.23 -10.77 -0.02 -1.03 16 11 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 12 C -0.15 -1.69 8.82 71.98 0.63 -1.06 16 13 C -0.08 -1.65 2.04 -10.56 -0.02 -1.67 16 14 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 15 C 0.07 1.47 4.83 86.30 0.42 1.89 16 16 N -0.69 -22.83 5.71 -517.93 -2.96 -25.79 16 17 C 0.07 2.40 6.17 85.56 0.53 2.93 16 18 C 0.43 21.74 7.82 87.66 0.69 22.43 16 19 O -0.63 -37.02 15.78 -3.08 -0.05 -37.07 16 20 N -0.57 -30.46 5.29 -306.98 -1.62 -32.09 16 21 C -0.34 -19.82 9.68 84.04 0.81 -19.01 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 25 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 C 0.12 3.09 5.57 86.52 0.48 3.57 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.04 1.00 8.10 -2.38 -0.02 0.98 16 34 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 35 H 0.13 1.39 7.95 -2.38 -0.02 1.37 16 36 H 0.12 1.44 7.69 -2.39 -0.02 1.42 16 37 H 0.11 0.58 5.93 -2.39 -0.01 0.56 16 38 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.71 6.29 -2.39 -0.02 0.70 16 43 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.05 1.03 6.14 -2.39 -0.01 1.02 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.34 12.33 8.43 -89.69 -0.76 11.57 16 47 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 50 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 51 H 0.07 1.65 8.14 -2.38 -0.02 1.64 16 52 H 0.06 2.13 6.80 -2.39 -0.02 2.11 16 Total: -1.00 -80.42 415.23 0.17 -80.25 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.57 Total: 40.92 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 7.12 Total: 23.28 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -6.72 Total: -122.66 kcal Atomic # 8 Polarization: -66.37 SS G_CDS: -1.69 Total: -68.06 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -80.42 0.17 -80.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132581464.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.636 kcal (2) G-P(sol) polarization free energy of solvation -80.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds