Wall clock time and date at job start Wed Apr 1 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42909 * 113.99770 * 2 1 4 4 C 1.50697 * 109.47141 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00039 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00154 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99821 * 359.97438 * 6 4 3 8 8 C 1.46499 * 120.00336 * 180.02562 * 6 4 3 9 9 C 1.50706 * 109.47360 * 89.99763 * 8 6 4 10 10 O 1.21283 * 119.99788 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99836 * 180.02562 * 9 8 6 12 12 C 1.46931 * 120.60689 * 359.97438 * 11 9 8 13 13 C 1.53196 * 108.77131 * 233.57988 * 12 11 9 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 H 1.09001 * 109.45915 * 181.36781 * 14 13 12 16 16 C 1.52997 * 109.46063 * 301.34383 * 14 13 12 17 17 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 18 18 H 1.08993 * 109.49877 * 58.58562 * 17 14 13 19 19 C 1.53003 * 109.49562 * 178.68194 * 17 14 13 20 20 N 1.46496 * 109.47061 * 184.99779 * 19 17 14 21 21 C 1.36937 * 120.00448 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99523 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00268 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99911 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00156 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47219 * 90.00204 * 25 23 21 27 27 H 1.48499 * 109.47334 * 209.99907 * 25 23 21 28 28 H 1.48493 * 109.47227 * 330.00010 * 25 23 21 29 29 C 1.46928 * 120.62574 * 180.02562 * 11 9 8 30 30 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47594 * 300.00018 * 1 2 3 32 32 H 1.09000 * 109.47177 * 60.00010 * 1 2 3 33 33 H 1.09003 * 109.46815 * 59.99993 * 3 2 1 34 34 H 1.09001 * 109.46994 * 300.00193 * 3 2 1 35 35 H 1.09001 * 109.47559 * 269.99996 * 7 6 4 36 36 H 1.09004 * 109.47433 * 30.00135 * 7 6 4 37 37 H 1.09004 * 109.47184 * 150.00328 * 7 6 4 38 38 H 1.09005 * 109.46964 * 329.99691 * 8 6 4 39 39 H 1.09005 * 109.47205 * 209.99649 * 8 6 4 40 40 H 1.08996 * 109.56502 * 113.80682 * 12 11 9 41 41 H 1.09001 * 109.61713 * 353.38104 * 12 11 9 42 42 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 43 43 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 44 44 H 1.08993 * 109.47386 * 60.00080 * 16 14 13 45 45 H 1.09003 * 109.47185 * 180.02562 * 16 14 13 46 46 H 1.09003 * 109.47399 * 299.99570 * 16 14 13 47 47 H 1.08997 * 109.47322 * 304.99811 * 19 17 14 48 48 H 1.09005 * 109.47051 * 64.99873 * 19 17 14 49 49 H 0.97003 * 120.00032 * 359.97438 * 20 19 17 50 50 H 0.96998 * 120.00230 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.58597 * 6.59803 * 29 11 9 52 52 H 1.09001 * 109.69741 * 246.24622 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 8 4.0341 0.0917 0.0006 6 7 4.2763 2.2969 0.0013 7 6 3.6462 3.6195 0.0008 8 6 5.7367 2.1814 0.0013 9 6 6.2377 2.1424 -1.4195 10 8 5.4521 2.2055 -2.3414 11 7 7.5586 2.0375 -1.6656 12 6 8.5220 1.9607 -0.5589 13 6 9.5843 3.0472 -0.7538 14 6 10.2092 2.9015 -2.1432 15 1 10.9824 3.6585 -2.2748 16 6 10.8299 1.5098 -2.2796 17 6 9.1291 3.0848 -3.2119 18 1 8.6692 4.0666 -3.0998 19 6 9.7607 2.9716 -4.6009 20 7 8.7516 3.2649 -5.6216 21 6 9.0878 3.2246 -6.9484 22 1 10.0971 2.9769 -7.2424 23 6 8.1315 3.5019 -7.9155 24 7 8.4548 3.4636 -9.1908 25 14 6.3857 3.9296 -7.4071 26 1 6.2688 5.3988 -7.2255 27 1 5.4398 3.4845 -8.4618 28 1 6.0604 3.2455 -6.1298 29 6 8.0621 1.9989 -3.0454 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.4907 3.9476 -1.0270 36 1 2.6860 3.5648 0.5139 37 1 4.2930 4.3303 0.5151 38 1 6.0287 1.2652 0.5148 39 1 6.1691 3.0397 0.5156 40 1 8.9982 0.9803 -0.5569 41 1 8.0055 2.1203 0.3876 42 1 10.3582 2.9398 0.0062 43 1 9.1206 4.0296 -0.6646 44 1 10.0570 0.7527 -2.1476 45 1 11.2754 1.4060 -3.2690 46 1 11.6000 1.3793 -1.5194 47 1 10.5813 3.6840 -4.6861 48 1 10.1409 1.9604 -4.7459 49 1 7.8450 3.4870 -5.3576 50 1 7.7867 3.6578 -9.8666 51 1 7.2418 2.1833 -3.7390 52 1 8.5004 1.0219 -3.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132874727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:30 Heat of formation + Delta-G solvation = -87.786173 kcal Electronic energy + Delta-G solvation = -31413.499573 eV Core-core repulsion = 27221.304709 eV Total energy + Delta-G solvation = -4192.194864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.79207 -39.90538 -38.25809 -37.56807 -35.65232 -35.13425 -33.61417 -31.96027 -30.72964 -30.07401 -28.49524 -27.67828 -26.85108 -26.12358 -25.21805 -24.46551 -22.89571 -21.13186 -20.59872 -19.41931 -18.33698 -17.79285 -17.55070 -17.30475 -17.00270 -16.56579 -16.16530 -15.58101 -15.32365 -15.19141 -15.00239 -14.72289 -14.57710 -14.12434 -13.91961 -13.55128 -13.51970 -13.27212 -13.17025 -13.12502 -12.83378 -12.67441 -12.57640 -12.52293 -12.15319 -12.01909 -11.78345 -11.72328 -11.52054 -11.20652 -11.07574 -10.82986 -10.68414 -10.35631 -10.20518 -10.16009 -10.08164 -10.02823 -9.94405 -9.52451 -8.93364 -8.84751 -8.53647 -7.17756 -5.72135 -3.07404 2.17009 2.41892 2.60963 3.03579 3.44438 3.51987 3.54073 3.55539 4.22438 4.35265 4.54389 4.57683 4.65906 4.69833 4.73060 4.77808 4.80006 4.83785 4.94077 5.01083 5.03061 5.07268 5.10688 5.17930 5.23586 5.31750 5.39472 5.46221 5.54165 5.58195 5.61570 5.69028 5.77310 5.79573 5.89963 5.93372 6.00834 6.21206 6.24602 6.28746 6.43601 6.53376 6.59273 6.68367 6.79854 6.96353 7.39145 7.87096 8.03649 8.18438 8.46988 9.26140 9.99080 10.18308 11.46228 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003336 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.156105 B = 8391.766588 C =10589.569627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.521 3.479 5 O -0.514 6.514 6 N -0.601 5.601 7 C 0.076 3.924 8 C 0.101 3.899 9 C 0.495 3.505 10 O -0.527 6.527 11 N -0.609 5.609 12 C 0.104 3.896 13 C -0.129 4.129 14 C -0.084 4.084 15 H 0.076 0.924 16 C -0.155 4.155 17 C -0.105 4.105 18 H 0.072 0.928 19 C 0.164 3.836 20 N -0.757 5.757 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.879 3.121 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.273 1.273 29 C 0.118 3.882 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.031 0.969 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.095 0.905 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 0.006 28.734 29.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.308 3.692 5 O -0.388 6.388 6 N -0.336 5.336 7 C -0.067 4.067 8 C -0.026 4.026 9 C 0.280 3.720 10 O -0.402 6.402 11 N -0.344 5.344 12 C -0.019 4.019 13 C -0.167 4.167 14 C -0.103 4.103 15 H 0.094 0.906 16 C -0.212 4.212 17 C -0.125 4.125 18 H 0.090 0.910 19 C 0.037 3.963 20 N -0.403 5.403 21 C -0.373 4.373 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.583 5.583 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.199 1.199 29 C -0.004 4.004 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.113 0.887 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.858 -0.777 28.031 29.122 hybrid contribution -1.406 0.779 0.103 1.611 sum -9.264 0.002 28.134 29.620 Atomic orbital electron populations 1.22846 0.80243 1.03424 1.00139 1.88022 1.19887 1.25153 1.95412 1.22249 0.91326 0.87061 1.02593 1.20223 0.88848 0.83984 0.76114 1.90735 1.74422 1.26146 1.47478 1.47309 1.05211 1.06750 1.74349 1.21924 0.98492 0.83297 1.02995 1.21368 0.80850 1.05382 0.94963 1.21096 0.82238 0.76692 0.91926 1.90741 1.54627 1.48864 1.45976 1.48169 1.05446 1.72888 1.07882 1.21803 0.90915 1.00037 0.89106 1.21950 0.97998 0.98874 0.97856 1.21057 0.97231 0.98420 0.93590 0.90598 1.22001 1.00402 0.96413 1.02354 1.21733 0.95564 0.99079 0.96125 0.90951 1.20669 0.91916 0.98407 0.85329 1.42779 1.08677 1.85688 1.03128 1.19039 0.97633 1.39975 0.80654 0.89215 1.24644 0.97586 1.01717 0.95046 1.69702 1.33762 1.55918 0.98927 0.86610 0.86206 0.78348 0.77898 1.21181 1.21704 1.19853 1.21727 0.97984 0.99056 0.81592 0.88999 0.93851 0.93647 0.90225 0.89844 0.91559 0.90804 0.90554 0.86864 0.87368 0.90726 0.90325 0.90633 0.91532 0.92401 0.91619 0.92979 0.95231 0.95097 0.80572 0.93100 0.88683 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.37 -4.41 10.24 -55.14 -0.56 -4.98 16 3 C 0.05 0.46 4.97 36.00 0.18 0.64 16 4 C 0.52 6.85 7.75 -10.99 -0.09 6.76 16 5 O -0.51 -9.03 16.08 -14.36 -0.23 -9.26 16 6 N -0.60 -6.39 2.36 -182.95 -0.43 -6.82 16 7 C 0.08 0.51 10.29 59.85 0.62 1.13 16 8 C 0.10 1.03 4.28 -5.19 -0.02 1.01 16 9 C 0.49 7.29 7.77 -10.98 -0.09 7.20 16 10 O -0.53 -10.37 15.84 5.56 0.09 -10.28 16 11 N -0.61 -8.09 2.97 -172.79 -0.51 -8.61 16 12 C 0.10 0.92 5.87 -3.71 -0.02 0.90 16 13 C -0.13 -1.09 5.62 -26.61 -0.15 -1.24 16 14 C -0.08 -0.94 2.71 -90.58 -0.25 -1.18 16 15 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 16 C -0.15 -1.65 8.11 37.16 0.30 -1.35 16 17 C -0.11 -1.60 2.15 -90.52 -0.19 -1.79 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.16 5.19 -4.04 -0.02 3.14 16 20 N -0.76 -18.58 5.18 -59.91 -0.31 -18.89 16 21 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 22 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 24 N -0.94 -30.24 13.97 55.49 0.78 -29.47 16 25 Si 0.88 23.45 27.74 -169.99 -4.71 18.73 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 27 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 28 H -0.27 -7.15 6.52 56.52 0.37 -6.78 16 29 C 0.12 1.92 5.04 -3.73 -0.02 1.90 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.48 7.40 -51.93 -0.38 0.09 16 34 H 0.08 0.71 8.11 -51.93 -0.42 0.28 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.29 6.44 -51.93 -0.33 -0.04 16 37 H 0.08 0.35 7.89 -51.93 -0.41 -0.06 16 38 H 0.11 1.14 7.22 -51.93 -0.37 0.76 16 39 H 0.11 0.68 7.44 -51.93 -0.39 0.29 16 40 H 0.07 0.63 6.70 -51.93 -0.35 0.29 16 41 H 0.08 0.48 5.93 -51.93 -0.31 0.17 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.63 4.98 -51.93 -0.26 0.38 16 45 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.03 0.60 6.73 -51.93 -0.35 0.25 16 49 H 0.36 8.94 4.76 -40.82 -0.19 8.74 16 50 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 51 H 0.09 1.94 6.21 -51.93 -0.32 1.62 16 52 H 0.07 1.16 6.70 -51.93 -0.35 0.81 16 LS Contribution 402.73 15.07 6.07 6.07 Total: -1.00 -40.64 402.73 -7.32 -47.96 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.60 Total: 4.25 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 1.11 Total: 11.28 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.48 Total: -63.79 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.71 Total: -24.52 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.71 Total: 18.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -40.64 -7.32 -47.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132874727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.826 kcal (2) G-P(sol) polarization free energy of solvation -40.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds