Wall clock time and date at job start Wed Apr 1 2020 01:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42909 * 113.99770 * 2 1 4 4 C 1.50697 * 109.47141 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00039 * 0.02562 * 4 3 2 6 6 N 1.34769 * 120.00154 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99821 * 359.97438 * 6 4 3 8 8 C 1.46499 * 120.00336 * 180.02562 * 6 4 3 9 9 C 1.50706 * 109.47360 * 89.99763 * 8 6 4 10 10 O 1.21283 * 119.99788 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99836 * 180.02562 * 9 8 6 12 12 C 1.46931 * 120.60689 * 359.97438 * 11 9 8 13 13 C 1.53196 * 108.77131 * 233.57988 * 12 11 9 14 14 C 1.53039 * 109.33748 * 305.41286 * 13 12 11 15 15 H 1.09001 * 109.45915 * 181.36781 * 14 13 12 16 16 C 1.52997 * 109.46063 * 301.34383 * 14 13 12 17 17 C 1.53045 * 109.53694 * 61.35198 * 14 13 12 18 18 H 1.08993 * 109.49877 * 58.58562 * 17 14 13 19 19 C 1.53003 * 109.49562 * 178.68194 * 17 14 13 20 20 N 1.46496 * 109.47061 * 184.99779 * 19 17 14 21 21 C 1.36937 * 120.00448 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99523 * 359.97438 * 21 20 19 23 23 C 1.38805 * 120.00268 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99911 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00156 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47219 * 90.00204 * 25 23 21 27 27 H 1.48499 * 109.47334 * 209.99907 * 25 23 21 28 28 H 1.48493 * 109.47227 * 330.00010 * 25 23 21 29 29 C 1.46928 * 120.62574 * 180.02562 * 11 9 8 30 30 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47594 * 300.00018 * 1 2 3 32 32 H 1.09000 * 109.47177 * 60.00010 * 1 2 3 33 33 H 1.09003 * 109.46815 * 59.99993 * 3 2 1 34 34 H 1.09001 * 109.46994 * 300.00193 * 3 2 1 35 35 H 1.09001 * 109.47559 * 269.99996 * 7 6 4 36 36 H 1.09004 * 109.47433 * 30.00135 * 7 6 4 37 37 H 1.09004 * 109.47184 * 150.00328 * 7 6 4 38 38 H 1.09005 * 109.46964 * 329.99691 * 8 6 4 39 39 H 1.09005 * 109.47205 * 209.99649 * 8 6 4 40 40 H 1.08996 * 109.56502 * 113.80682 * 12 11 9 41 41 H 1.09001 * 109.61713 * 353.38104 * 12 11 9 42 42 H 1.09002 * 109.49815 * 185.44599 * 13 12 11 43 43 H 1.09000 * 109.49595 * 65.37996 * 13 12 11 44 44 H 1.08993 * 109.47386 * 60.00080 * 16 14 13 45 45 H 1.09003 * 109.47185 * 180.02562 * 16 14 13 46 46 H 1.09003 * 109.47399 * 299.99570 * 16 14 13 47 47 H 1.08997 * 109.47322 * 304.99811 * 19 17 14 48 48 H 1.09005 * 109.47051 * 64.99873 * 19 17 14 49 49 H 0.97003 * 120.00032 * 359.97438 * 20 19 17 50 50 H 0.96998 * 120.00230 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.58597 * 6.59803 * 29 11 9 52 52 H 1.09001 * 109.69741 * 246.24622 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5124 1.1866 0.0006 5 8 4.0341 0.0917 0.0006 6 7 4.2763 2.2969 0.0013 7 6 3.6462 3.6195 0.0008 8 6 5.7367 2.1814 0.0013 9 6 6.2377 2.1424 -1.4195 10 8 5.4521 2.2055 -2.3414 11 7 7.5586 2.0375 -1.6656 12 6 8.5220 1.9607 -0.5589 13 6 9.5843 3.0472 -0.7538 14 6 10.2092 2.9015 -2.1432 15 1 10.9824 3.6585 -2.2748 16 6 10.8299 1.5098 -2.2796 17 6 9.1291 3.0848 -3.2119 18 1 8.6692 4.0666 -3.0998 19 6 9.7607 2.9716 -4.6009 20 7 8.7516 3.2649 -5.6216 21 6 9.0878 3.2246 -6.9484 22 1 10.0971 2.9769 -7.2424 23 6 8.1315 3.5019 -7.9155 24 7 8.4548 3.4636 -9.1908 25 14 6.3857 3.9296 -7.4071 26 1 6.2688 5.3988 -7.2255 27 1 5.4398 3.4845 -8.4618 28 1 6.0604 3.2455 -6.1298 29 6 8.0621 1.9989 -3.0454 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.4907 3.9476 -1.0270 36 1 2.6860 3.5648 0.5139 37 1 4.2930 4.3303 0.5151 38 1 6.0287 1.2652 0.5148 39 1 6.1691 3.0397 0.5156 40 1 8.9982 0.9803 -0.5569 41 1 8.0055 2.1203 0.3876 42 1 10.3582 2.9398 0.0062 43 1 9.1206 4.0296 -0.6646 44 1 10.0570 0.7527 -2.1476 45 1 11.2754 1.4060 -3.2690 46 1 11.6000 1.3793 -1.5194 47 1 10.5813 3.6840 -4.6861 48 1 10.1409 1.9604 -4.7459 49 1 7.8450 3.4870 -5.3576 50 1 7.7867 3.6578 -9.8666 51 1 7.2418 2.1833 -3.7390 52 1 8.5004 1.0219 -3.2494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132874727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:25 Heat of formation + Delta-G solvation = -118.389132 kcal Electronic energy + Delta-G solvation = -31414.826617 eV Core-core repulsion = 27221.304709 eV Total energy + Delta-G solvation = -4193.521908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.79041 -40.86496 -39.32368 -38.41512 -36.82125 -36.55298 -34.95496 -33.68587 -32.10861 -31.13665 -29.22836 -28.71220 -27.64393 -27.15753 -26.27993 -25.38775 -24.59892 -22.57999 -21.63797 -20.47221 -19.73566 -19.11507 -18.60323 -18.33975 -17.84021 -17.36107 -17.06042 -16.82310 -16.50448 -16.30770 -16.19793 -15.92421 -15.55878 -15.37664 -15.27356 -14.83371 -14.64284 -14.44847 -14.25658 -14.05527 -13.93731 -13.86150 -13.42665 -13.39754 -13.23117 -13.05383 -12.97022 -12.87762 -12.66871 -12.44740 -12.38066 -12.28176 -12.02911 -11.91564 -11.73461 -11.41563 -11.29253 -11.09555 -11.03002 -10.98201 -10.81305 -9.82151 -9.62627 -9.34096 -8.09988 -5.41613 1.27992 1.28512 1.32517 1.39268 1.52861 1.64748 2.05685 2.39612 2.91879 3.21878 3.43073 3.50191 3.53664 3.77007 3.81895 3.98457 4.00982 4.07657 4.10128 4.17602 4.23869 4.26738 4.29278 4.36684 4.46041 4.50867 4.52931 4.53944 4.63275 4.71725 4.75228 4.78403 4.82711 4.89190 4.90741 4.99341 5.06081 5.15632 5.21184 5.24686 5.29761 5.39854 5.50410 5.59151 5.70178 5.93841 6.15359 6.21617 6.37366 6.98000 7.01036 7.11492 7.78711 7.95244 9.11816 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009544 B = 0.003336 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.156105 B = 8391.766588 C =10589.569627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.048 3.952 4 C 0.507 3.493 5 O -0.573 6.573 6 N -0.599 5.599 7 C 0.068 3.932 8 C 0.104 3.896 9 C 0.484 3.516 10 O -0.589 6.589 11 N -0.606 5.606 12 C 0.095 3.905 13 C -0.120 4.120 14 C -0.080 4.080 15 H 0.084 0.916 16 C -0.152 4.152 17 C -0.091 4.091 18 H 0.065 0.935 19 C 0.160 3.840 20 N -0.762 5.762 21 C -0.230 4.230 22 H 0.064 0.936 23 C -0.057 4.057 24 N -0.980 5.980 25 Si 0.946 3.054 26 H -0.273 1.273 27 H -0.293 1.293 28 H -0.273 1.273 29 C 0.124 3.876 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.046 0.954 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 1.548 33.259 34.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.031 4.031 4 C 0.296 3.704 5 O -0.452 6.452 6 N -0.332 5.332 7 C -0.073 4.073 8 C -0.022 4.022 9 C 0.272 3.728 10 O -0.469 6.469 11 N -0.339 5.339 12 C -0.025 4.025 13 C -0.157 4.157 14 C -0.099 4.099 15 H 0.103 0.897 16 C -0.209 4.209 17 C -0.110 4.110 18 H 0.083 0.917 19 C 0.034 3.966 20 N -0.407 5.407 21 C -0.361 4.361 22 H 0.082 0.918 23 C -0.249 4.249 24 N -0.631 5.631 25 Si 0.774 3.226 26 H -0.198 1.198 27 H -0.219 1.219 28 H -0.198 1.198 29 C 0.001 3.999 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.177 0.823 40 H 0.100 0.900 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.099 0.901 47 H 0.051 0.949 48 H 0.048 0.952 49 H 0.193 0.807 50 H 0.068 0.932 51 H 0.064 0.936 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.176 0.810 32.637 33.655 hybrid contribution -1.184 0.264 -1.305 1.782 sum -9.361 1.074 31.332 32.718 Atomic orbital electron populations 1.23044 0.78149 1.04222 1.01698 1.87965 1.22320 1.26791 1.95774 1.22410 0.88992 0.86768 1.04934 1.21007 0.90542 0.83757 0.75054 1.90692 1.75660 1.28366 1.50458 1.47524 1.05451 1.07598 1.72643 1.22212 1.00655 0.81804 1.02605 1.21575 0.81057 1.07749 0.91823 1.22064 0.82069 0.75325 0.93359 1.90710 1.56229 1.51804 1.48182 1.48276 1.06107 1.71862 1.07610 1.22223 0.90593 1.00853 0.88876 1.21942 0.98515 0.98852 0.96431 1.21082 0.96006 0.98931 0.93916 0.89741 1.21979 1.00884 0.95931 1.02148 1.21589 0.96380 0.98130 0.94951 0.91704 1.20893 0.91129 0.98071 0.86543 1.42874 1.09787 1.85557 1.02506 1.19080 0.96384 1.37860 0.82780 0.91831 1.25349 1.01565 1.02888 0.95070 1.69848 1.35081 1.58080 1.00066 0.85549 0.81312 0.78567 0.77153 1.19835 1.21916 1.19842 1.21379 0.96461 0.99051 0.83048 0.88759 0.91354 0.92908 0.85952 0.88927 0.93630 0.87691 0.87605 0.86477 0.82320 0.90016 0.86524 0.86983 0.90964 0.92978 0.93745 0.90065 0.94863 0.95249 0.80652 0.93231 0.93558 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -9.64 10.24 -129.94 -1.33 -10.97 16 3 C 0.05 0.85 4.97 71.23 0.35 1.21 16 4 C 0.51 12.97 7.75 87.66 0.68 13.65 16 5 O -0.57 -20.56 16.08 15.98 0.26 -20.31 16 6 N -0.60 -11.51 2.36 -851.11 -2.01 -13.52 16 7 C 0.07 0.71 10.29 127.77 1.31 2.02 16 8 C 0.10 1.85 4.28 85.64 0.37 2.21 16 9 C 0.48 13.92 7.77 87.66 0.68 14.60 16 10 O -0.59 -23.96 15.84 -3.04 -0.05 -24.00 16 11 N -0.61 -15.32 2.97 -818.96 -2.43 -17.75 16 12 C 0.10 1.32 5.87 86.36 0.51 1.83 16 13 C -0.12 -1.46 5.62 30.67 0.17 -1.28 16 14 C -0.08 -1.57 2.71 -10.77 -0.03 -1.60 16 15 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 16 C -0.15 -2.90 8.11 71.98 0.58 -2.32 16 17 C -0.09 -2.70 2.15 -10.73 -0.02 -2.73 16 18 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 19 C 0.16 6.23 5.19 86.38 0.45 6.68 16 20 N -0.76 -38.33 5.18 -343.45 -1.78 -40.11 16 21 C -0.23 -13.84 10.47 84.03 0.88 -12.96 16 22 H 0.06 4.09 8.06 -2.91 -0.02 4.07 16 23 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 24 N -0.98 -65.31 13.97 21.65 0.30 -65.01 16 25 Si 0.95 50.09 27.74 68.60 1.90 51.99 16 26 H -0.27 -13.77 7.11 99.48 0.71 -13.07 16 27 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 28 H -0.27 -14.29 6.52 99.48 0.65 -13.64 16 29 C 0.12 4.10 5.04 86.35 0.44 4.54 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.12 1.03 7.40 -2.39 -0.02 1.02 16 34 H 0.09 1.44 8.11 -2.39 -0.02 1.42 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.41 6.44 -2.38 -0.02 0.39 16 37 H 0.11 0.48 7.89 -2.39 -0.02 0.46 16 38 H 0.12 2.06 7.22 -2.38 -0.02 2.04 16 39 H 0.16 1.14 7.44 -2.38 -0.02 1.13 16 40 H 0.08 1.08 6.70 -2.39 -0.02 1.07 16 41 H 0.12 0.78 5.93 -2.39 -0.01 0.77 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.05 1.05 4.98 -2.39 -0.01 1.04 16 45 H 0.04 1.03 6.57 -2.39 -0.02 1.01 16 46 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.03 1.17 6.73 -2.38 -0.02 1.15 16 49 H 0.36 18.25 4.76 -92.71 -0.44 17.81 16 50 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 51 H 0.05 1.99 6.21 -2.39 -0.01 1.98 16 52 H 0.07 2.19 6.70 -2.39 -0.02 2.18 16 Total: -1.00 -96.73 402.73 3.37 -93.37 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.42 Total: 21.98 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 8.08 Total: 24.33 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -5.92 Total: -136.39 kcal Atomic # 8 Polarization: -54.16 SS G_CDS: -1.12 Total: -55.28 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 1.90 Total: 51.99 kcal Total: -96.73 3.37 -93.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132874727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.020 kcal (2) G-P(sol) polarization free energy of solvation -96.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds