Wall clock time and date at job start Wed Apr 1 2020 01:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99869 * 2 1 4 4 C 1.50704 * 109.47081 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99631 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99999 * 0.02562 * 6 4 3 8 8 C 1.46505 * 119.99797 * 180.02562 * 6 4 3 9 9 C 1.50696 * 109.46881 * 90.00476 * 8 6 4 10 10 O 1.21286 * 120.00306 * 359.97438 * 9 8 6 11 11 N 1.34778 * 120.00030 * 179.97438 * 9 8 6 12 12 C 1.47207 * 120.81118 * 0.14238 * 11 9 8 13 13 C 1.53195 * 108.85456 * 126.33789 * 12 11 9 14 14 C 1.53038 * 109.31078 * 54.64814 * 13 12 11 15 15 H 1.09003 * 109.46001 * 178.60988 * 14 13 12 16 16 C 1.53007 * 109.44952 * 58.65418 * 14 13 12 17 17 C 1.53035 * 109.54175 * 298.63655 * 14 13 12 18 18 H 1.09003 * 109.49576 * 301.41349 * 17 14 13 19 19 C 1.53005 * 109.49699 * 181.31740 * 17 14 13 20 20 N 1.46504 * 109.46902 * 175.16257 * 19 17 14 21 21 C 1.36939 * 119.99891 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00036 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99748 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00010 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 120.00372 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.46911 * 89.99972 * 25 23 21 27 27 H 1.48494 * 109.47011 * 210.00179 * 25 23 21 28 28 H 1.48499 * 109.46661 * 330.00263 * 25 23 21 29 29 C 1.46926 * 120.63336 * 180.02562 * 11 9 8 30 30 H 1.08996 * 109.46999 * 299.99469 * 1 2 3 31 31 H 1.08995 * 109.46911 * 59.99805 * 1 2 3 32 32 H 1.09003 * 109.46656 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46517 * 60.00632 * 3 2 1 34 34 H 1.08996 * 109.47210 * 300.00272 * 3 2 1 35 35 H 1.08996 * 109.47657 * 269.99532 * 7 6 4 36 36 H 1.09001 * 109.47522 * 30.00126 * 7 6 4 37 37 H 1.09004 * 109.47100 * 149.99824 * 7 6 4 38 38 H 1.08992 * 109.47250 * 330.00268 * 8 6 4 39 39 H 1.09000 * 109.46990 * 209.99767 * 8 6 4 40 40 H 1.08996 * 109.53610 * 6.53286 * 12 11 9 41 41 H 1.08997 * 109.56315 * 246.15731 * 12 11 9 42 42 H 1.09002 * 109.49713 * 294.70061 * 13 12 11 43 43 H 1.08996 * 109.49824 * 174.60179 * 13 12 11 44 44 H 1.09003 * 109.46630 * 299.93659 * 16 14 13 45 45 H 1.08997 * 109.47103 * 59.93254 * 16 14 13 46 46 H 1.08996 * 109.46938 * 179.97438 * 16 14 13 47 47 H 1.09000 * 109.47319 * 295.15932 * 19 17 14 48 48 H 1.08995 * 109.47422 * 55.16582 * 19 17 14 49 49 H 0.97004 * 119.99900 * 359.97438 * 20 19 17 50 50 H 0.96993 * 120.00175 * 179.97438 * 24 23 21 51 51 H 1.09002 * 109.58861 * 113.82042 * 29 11 9 52 52 H 1.08996 * 109.58519 * 353.53933 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 0.0013 7 6 3.6464 3.6194 0.0019 8 6 5.7369 2.1811 0.0013 9 6 6.2377 2.1423 -1.4195 10 8 5.4521 2.2046 -2.3414 11 7 7.5587 2.0383 -1.6658 12 6 8.5278 1.9583 -0.5605 13 6 9.4045 0.7179 -0.7597 14 6 10.0417 0.7664 -2.1503 15 1 10.6856 -0.1027 -2.2852 16 6 10.8741 2.0431 -2.2850 17 6 8.9441 0.7584 -3.2167 18 1 8.3353 -0.1388 -3.1055 19 6 9.5829 0.7738 -4.6070 20 7 8.5377 0.6497 -5.6260 21 6 8.8735 0.6393 -6.9535 22 1 9.9087 0.7230 -7.2493 23 6 7.8831 0.5212 -7.9190 24 7 8.2058 0.5118 -9.1950 25 14 6.0924 0.3757 -7.4074 26 1 5.4926 1.7311 -7.3138 27 1 5.3528 -0.4243 -8.4163 28 1 6.0084 -0.2951 -6.0852 29 6 8.0623 1.9998 -3.0455 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.4903 3.9480 -1.0255 36 1 2.6867 3.5644 0.5156 37 1 4.2936 4.3299 0.5162 38 1 6.0288 1.2650 0.5146 39 1 6.1694 3.0394 0.5156 40 1 7.9945 1.8806 0.3869 41 1 9.1531 2.8511 -0.5580 42 1 8.7913 -0.1790 -0.6716 43 1 10.1872 0.7000 -0.0013 44 1 10.2303 2.9124 -2.1505 45 1 11.6559 2.0490 -1.5255 46 1 11.3284 2.0778 -3.2752 47 1 10.1200 1.7115 -4.7498 48 1 10.2784 -0.0606 -4.6966 49 1 7.6078 0.5742 -5.3603 50 1 7.5138 0.4289 -9.8696 51 1 8.6497 2.8961 -3.2453 52 1 7.2232 1.9507 -3.7394 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132874728.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:43 Heat of formation + Delta-G solvation = -118.662284 kcal Electronic energy + Delta-G solvation = -31522.432436 eV Core-core repulsion = 27328.898684 eV Total energy + Delta-G solvation = -4193.533752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78078 -40.86340 -39.33225 -38.42361 -36.82882 -36.55518 -34.95320 -33.70080 -32.11139 -31.14252 -29.22798 -28.71187 -27.64150 -27.15957 -26.27663 -25.39194 -24.61418 -22.60010 -21.65040 -20.46574 -19.74668 -19.12835 -18.57840 -18.40425 -17.80709 -17.36566 -17.07307 -16.83920 -16.54280 -16.25291 -16.19128 -15.98912 -15.59722 -15.38253 -15.21694 -14.85967 -14.66794 -14.45228 -14.27074 -14.06702 -13.91959 -13.85428 -13.44357 -13.39584 -13.23528 -13.07881 -12.99475 -12.87322 -12.67248 -12.48147 -12.38839 -12.25010 -12.06808 -11.92828 -11.74606 -11.44254 -11.31649 -11.11366 -11.03595 -10.98615 -10.81969 -9.81751 -9.62491 -9.35859 -8.12002 -5.43009 1.26071 1.27957 1.28724 1.34876 1.52898 1.64622 2.06820 2.36578 2.91833 3.20071 3.42120 3.49776 3.52317 3.75536 3.80516 3.96982 4.00336 4.06710 4.10783 4.17171 4.23025 4.27334 4.28561 4.36283 4.44819 4.50076 4.52153 4.52990 4.64451 4.69750 4.74649 4.76862 4.81778 4.88198 4.91403 4.97452 5.05405 5.14170 5.20481 5.24751 5.29118 5.39014 5.49384 5.60115 5.68831 5.93538 6.13829 6.21743 6.37225 6.98279 6.98796 7.11550 7.76523 7.93245 9.09799 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.003614 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.365975 B = 7744.821988 C =10088.556714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.048 3.952 4 C 0.506 3.494 5 O -0.574 6.574 6 N -0.599 5.599 7 C 0.069 3.931 8 C 0.104 3.896 9 C 0.484 3.516 10 O -0.589 6.589 11 N -0.607 5.607 12 C 0.098 3.902 13 C -0.126 4.126 14 C -0.080 4.080 15 H 0.076 0.924 16 C -0.149 4.149 17 C -0.096 4.096 18 H 0.046 0.954 19 C 0.162 3.838 20 N -0.764 5.764 21 C -0.228 4.228 22 H 0.068 0.932 23 C -0.052 4.052 24 N -0.977 5.977 25 Si 0.941 3.059 26 H -0.282 1.282 27 H -0.286 1.286 28 H -0.276 1.276 29 C 0.125 3.875 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.162 0.838 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.114 0.886 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.041 0.959 48 H 0.028 0.972 49 H 0.359 0.641 50 H 0.259 0.741 51 H 0.083 0.917 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 10.265 33.060 35.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.031 4.031 4 C 0.295 3.705 5 O -0.453 6.453 6 N -0.332 5.332 7 C -0.072 4.072 8 C -0.022 4.022 9 C 0.272 3.728 10 O -0.469 6.469 11 N -0.340 5.340 12 C -0.022 4.022 13 C -0.164 4.164 14 C -0.099 4.099 15 H 0.095 0.905 16 C -0.206 4.206 17 C -0.116 4.116 18 H 0.064 0.936 19 C 0.036 3.964 20 N -0.409 5.409 21 C -0.359 4.359 22 H 0.086 0.914 23 C -0.244 4.244 24 N -0.628 5.628 25 Si 0.770 3.230 26 H -0.209 1.209 27 H -0.213 1.213 28 H -0.202 1.202 29 C 0.002 3.998 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.142 0.858 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.180 0.820 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.046 0.954 49 H 0.191 0.809 50 H 0.068 0.932 51 H 0.101 0.899 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.125 9.586 32.433 34.563 hybrid contribution -1.342 -0.372 -1.202 1.840 sum -8.467 9.214 31.231 33.645 Atomic orbital electron populations 1.23044 0.78136 1.04185 1.01737 1.87972 1.22349 1.26889 1.95778 1.22418 0.88962 0.86736 1.04969 1.21042 0.90599 0.83807 0.75094 1.90703 1.75686 1.28483 1.50426 1.47526 1.05435 1.07615 1.72647 1.22217 1.00622 0.81692 1.02683 1.21573 0.81077 1.07712 0.91854 1.22050 0.82023 0.75374 0.93348 1.90706 1.56178 1.51873 1.48183 1.48367 1.06147 1.71777 1.07699 1.22274 0.91239 0.99936 0.88783 1.21957 0.99885 0.97683 0.96842 1.21059 0.95053 1.00237 0.93535 0.90524 1.21962 0.99867 0.96414 1.02313 1.21624 0.97522 0.97134 0.95327 0.93575 1.20886 0.90460 0.98829 0.86267 1.42930 1.05220 1.90096 1.02641 1.19096 0.94032 1.40239 0.82566 0.91408 1.25261 1.00978 1.03029 0.95129 1.69826 1.33388 1.59639 0.99928 0.85635 0.82367 0.77887 0.77097 1.20881 1.21255 1.20220 1.21408 0.97074 0.98324 0.83011 0.91230 0.92894 0.88882 0.85848 0.88883 0.93471 0.87816 0.87446 0.86802 0.82035 0.86932 0.88071 0.92985 0.86746 0.92009 0.89933 0.93545 0.94140 0.95437 0.80896 0.93163 0.89942 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -10.10 10.24 -129.94 -1.33 -11.43 16 3 C 0.05 0.89 4.97 71.24 0.35 1.24 16 4 C 0.51 13.31 7.75 87.66 0.68 13.99 16 5 O -0.57 -21.40 16.08 15.99 0.26 -21.14 16 6 N -0.60 -11.55 2.36 -851.15 -2.01 -13.56 16 7 C 0.07 0.67 10.29 127.77 1.31 1.98 16 8 C 0.10 1.85 4.29 85.63 0.37 2.22 16 9 C 0.48 13.90 7.77 87.66 0.68 14.58 16 10 O -0.59 -23.89 15.84 -3.05 -0.05 -23.93 16 11 N -0.61 -15.21 2.98 -818.11 -2.44 -17.66 16 12 C 0.10 1.33 5.88 86.31 0.51 1.84 16 13 C -0.13 -1.93 5.63 30.67 0.17 -1.76 16 14 C -0.08 -1.71 2.71 -10.77 -0.03 -1.74 16 15 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 16 C -0.15 -2.65 8.11 71.98 0.58 -2.07 16 17 C -0.10 -3.10 2.15 -10.70 -0.02 -3.13 16 18 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 19 C 0.16 6.50 5.19 86.38 0.45 6.94 16 20 N -0.76 -39.61 5.18 -343.45 -1.78 -41.38 16 21 C -0.23 -13.91 10.47 84.03 0.88 -13.02 16 22 H 0.07 4.37 8.06 -2.92 -0.02 4.35 16 23 C -0.05 -3.28 5.50 84.86 0.47 -2.81 16 24 N -0.98 -65.44 13.97 21.65 0.30 -65.14 16 25 Si 0.94 51.69 27.74 68.60 1.90 53.59 16 26 H -0.28 -15.35 7.11 99.48 0.71 -14.64 16 27 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 28 H -0.28 -14.98 6.52 99.48 0.65 -14.33 16 29 C 0.13 4.08 5.04 86.38 0.44 4.51 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.12 1.08 7.40 -2.39 -0.02 1.06 16 34 H 0.09 1.48 8.11 -2.39 -0.02 1.46 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 36 H 0.10 0.36 6.44 -2.39 -0.02 0.34 16 37 H 0.11 0.38 7.89 -2.39 -0.02 0.36 16 38 H 0.11 2.09 6.98 -2.39 -0.02 2.08 16 39 H 0.16 1.06 7.71 -2.39 -0.02 1.05 16 40 H 0.11 0.82 5.97 -2.39 -0.01 0.81 16 41 H 0.10 0.93 6.69 -2.39 -0.02 0.91 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 1.05 4.98 -2.39 -0.01 1.04 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 1.01 6.57 -2.39 -0.02 1.00 16 47 H 0.04 1.58 6.72 -2.39 -0.02 1.56 16 48 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.36 19.05 4.75 -92.71 -0.44 18.61 16 50 H 0.26 16.54 8.31 -92.71 -0.77 15.77 16 51 H 0.08 2.46 6.69 -2.39 -0.02 2.45 16 52 H 0.04 1.89 6.20 -2.39 -0.01 1.88 16 Total: -1.00 -98.21 402.77 3.36 -94.85 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.42 Total: 21.44 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: 8.09 Total: 24.36 kcal Atomic # 7 Polarization: -131.81 SS G_CDS: -5.93 Total: -137.74 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -1.12 Total: -56.51 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 1.90 Total: 53.59 kcal Total: -98.21 3.36 -94.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132874728.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.814 kcal (2) G-P(sol) polarization free energy of solvation -98.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds