Wall clock time and date at job start Wed Apr 1 2020 00:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00168 * 2 1 4 4 C 1.50697 * 109.46995 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00473 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99847 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00159 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47553 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47371 * 180.02562 * 8 7 6 10 10 O 1.21275 * 119.99920 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.46931 * 120.62930 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.77110 * 126.37290 * 12 11 9 14 14 C 1.53035 * 109.31200 * 54.63842 * 13 12 11 15 15 H 1.08997 * 109.46550 * 58.65370 * 14 13 12 16 16 C 1.53002 * 109.46137 * 178.61273 * 14 13 12 17 17 C 1.53045 * 109.53802 * 298.62997 * 14 13 12 18 18 H 1.09000 * 109.52739 * 301.40109 * 17 14 13 19 19 C 1.53000 * 109.49689 * 181.31568 * 17 14 13 20 20 N 1.46499 * 109.46840 * 175.16149 * 19 17 14 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00562 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99699 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47093 * 90.00457 * 25 23 21 27 27 H 1.48504 * 109.47189 * 210.00360 * 25 23 21 28 28 H 1.48500 * 109.47392 * 329.99935 * 25 23 21 29 29 C 1.46919 * 120.62978 * 179.97438 * 11 9 8 30 30 H 1.08994 * 109.47287 * 60.00297 * 1 2 3 31 31 H 1.08998 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46759 * 300.00103 * 1 2 3 33 33 H 1.08998 * 109.47086 * 59.99972 * 3 2 1 34 34 H 1.08996 * 109.46870 * 300.00040 * 3 2 1 35 35 H 0.97004 * 120.00102 * 0.02562 * 6 4 3 36 36 H 1.09003 * 109.47626 * 59.99846 * 7 6 4 37 37 H 1.09009 * 109.47102 * 300.00127 * 7 6 4 38 38 H 1.09003 * 109.46994 * 59.99197 * 8 7 6 39 39 H 1.09004 * 109.46810 * 299.99590 * 8 7 6 40 40 H 1.08998 * 109.58550 * 246.16275 * 12 11 9 41 41 H 1.08995 * 109.58730 * 6.44618 * 12 11 9 42 42 H 1.09005 * 109.49531 * 174.58550 * 13 12 11 43 43 H 1.08993 * 109.49943 * 294.68525 * 13 12 11 44 44 H 1.09002 * 109.47420 * 180.02562 * 16 14 13 45 45 H 1.09003 * 109.46607 * 300.06743 * 16 14 13 46 46 H 1.08998 * 109.47276 * 60.06703 * 16 14 13 47 47 H 1.09002 * 109.47398 * 295.16475 * 19 17 14 48 48 H 1.09001 * 109.47194 * 55.16655 * 19 17 14 49 49 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 50 50 H 0.96993 * 120.00222 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.58985 * 113.83884 * 29 11 9 52 52 H 1.08992 * 109.58857 * 353.40979 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7369 2.1811 0.0003 8 6 6.3593 3.5788 0.0004 9 6 7.8616 3.4597 -0.0002 10 8 8.3831 2.3648 -0.0002 11 7 8.6255 4.5701 0.0003 12 6 8.0083 5.9034 0.0020 13 6 8.5826 6.7110 1.1703 14 6 10.1098 6.7255 1.0731 15 1 10.4090 7.1620 0.1202 16 6 10.6856 7.5602 2.2189 17 6 10.6423 5.2938 1.1678 18 1 10.3231 4.8479 2.1098 19 6 12.1709 5.3123 1.1035 20 7 12.6846 3.9559 1.3098 21 6 14.0343 3.7253 1.2949 22 1 14.7202 4.5435 1.1314 23 6 14.5212 2.4401 1.4898 24 7 15.8185 2.2185 1.4759 25 14 13.3350 1.0251 1.7732 26 1 12.9657 0.4199 0.4684 27 1 13.9837 -0.0009 2.6287 28 1 12.1128 1.5312 2.4478 29 6 10.0913 4.4701 0.0003 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8594 3.1725 -0.0001 36 1 6.0586 1.6398 -0.8895 37 1 6.0585 1.6404 0.8905 38 1 6.0375 4.1197 0.8904 39 1 6.0378 4.1197 -0.8896 40 1 8.2307 6.4102 -0.9369 41 1 6.9289 5.8062 0.1180 42 1 8.2056 7.7328 1.1263 43 1 8.2823 6.2522 2.1122 44 1 11.7733 7.5711 2.1496 45 1 10.3064 8.5800 2.1516 46 1 10.3872 7.1237 3.1720 47 1 12.4891 5.6768 0.1268 48 1 12.5593 5.9700 1.8811 49 1 12.0687 3.2211 1.4570 50 1 16.1587 1.3205 1.6125 51 1 10.4842 4.8598 -0.9388 52 1 10.3865 3.4275 0.1177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132875510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:00 Heat of formation + Delta-G solvation = -107.970549 kcal Electronic energy + Delta-G solvation = -30115.031080 eV Core-core repulsion = 25921.960956 eV Total energy + Delta-G solvation = -4193.070124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.56032 -40.01234 -38.29428 -37.83250 -35.45629 -35.19650 -33.83559 -32.13826 -31.59686 -30.25118 -29.25404 -28.24464 -26.56488 -25.86635 -24.12661 -23.12986 -22.76546 -21.17839 -21.14689 -20.10932 -19.06300 -17.78170 -17.61854 -17.38721 -16.88443 -16.84334 -16.16643 -15.97178 -15.51656 -15.07018 -14.92910 -14.80638 -14.49294 -14.19855 -14.07015 -13.85882 -13.51804 -13.39945 -13.32366 -13.10669 -12.84060 -12.63374 -12.52310 -12.33465 -11.96426 -11.95582 -11.87508 -11.80003 -11.68151 -11.28160 -11.00606 -10.88988 -10.67240 -10.38888 -10.31655 -10.22817 -10.15219 -10.03095 -9.77096 -9.51742 -9.46500 -8.84793 -8.66281 -7.17408 -5.71653 -3.07208 2.25890 2.30042 2.51461 2.92715 3.48264 3.53030 3.57357 3.59836 4.18424 4.37601 4.39820 4.53508 4.55442 4.60447 4.65190 4.66914 4.72193 4.72350 4.81104 4.86148 4.95521 5.00049 5.13245 5.18851 5.22411 5.48068 5.51193 5.53931 5.56742 5.59949 5.66576 5.70724 5.73062 5.80479 5.82260 5.97426 5.98771 6.07995 6.22044 6.32008 6.33675 6.45756 6.46258 6.70421 6.76356 7.05373 7.31004 7.85413 8.03592 8.08342 8.47234 9.26385 9.99387 10.18340 11.46435 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.002351 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.069797 B =11907.051979 C =14010.632048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.510 3.490 5 O -0.511 6.511 6 N -0.732 5.732 7 C 0.134 3.866 8 C -0.151 4.151 9 C 0.514 3.486 10 O -0.529 6.529 11 N -0.611 5.611 12 C 0.106 3.894 13 C -0.129 4.129 14 C -0.084 4.084 15 H 0.073 0.927 16 C -0.149 4.149 17 C -0.106 4.106 18 H 0.073 0.927 19 C 0.163 3.837 20 N -0.757 5.757 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.882 3.118 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.118 3.882 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.027 0.973 48 H 0.035 0.965 49 H 0.362 0.638 50 H 0.259 0.741 51 H 0.070 0.930 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.019 12.199 -3.508 35.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.384 6.384 6 N -0.387 5.387 7 C 0.010 3.990 8 C -0.191 4.191 9 C 0.301 3.699 10 O -0.405 6.405 11 N -0.345 5.345 12 C -0.017 4.017 13 C -0.168 4.168 14 C -0.103 4.103 15 H 0.092 0.908 16 C -0.206 4.206 17 C -0.126 4.126 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.403 5.403 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.712 3.288 26 H -0.208 1.208 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.004 4.004 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.233 0.767 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.195 0.805 50 H 0.069 0.931 51 H 0.089 0.911 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -31.989 10.631 -3.531 33.893 hybrid contribution -1.154 -0.196 0.256 1.198 sum -33.142 10.435 -3.274 34.900 Atomic orbital electron populations 1.22856 0.80201 1.03510 1.00121 1.88042 1.19912 1.25056 1.95410 1.22223 0.91500 0.87204 1.02637 1.20258 0.88684 0.84596 0.76996 1.90794 1.74505 1.26411 1.46706 1.45841 1.07205 1.08686 1.76938 1.21079 0.77600 0.95693 1.04582 1.21822 0.93487 0.98972 1.04813 1.20270 0.88761 0.84233 0.76666 1.90800 1.74698 1.26085 1.48944 1.48180 1.07480 1.05618 1.73197 1.21770 0.97508 0.83092 0.99311 1.21992 0.96311 0.99977 0.98487 1.21076 0.93927 0.95477 0.99799 0.90845 1.21892 1.02028 0.98692 0.98010 1.21768 0.97354 0.94711 0.98754 0.90829 1.20705 0.88873 0.88231 0.98671 1.42773 1.04864 1.04049 1.88571 1.19022 0.81714 0.94930 1.41802 0.89249 1.24654 0.95485 0.97071 1.01759 1.69702 1.10825 1.20941 1.56728 0.86598 0.80685 0.83266 0.78266 1.20840 1.21748 1.20300 1.21737 0.77111 1.03100 0.98467 0.93743 0.88962 0.93740 0.90158 0.90157 0.76704 0.90196 0.90197 0.88205 0.88244 0.91137 0.90057 0.90693 0.91465 0.91434 0.93095 0.92790 0.95496 0.94700 0.80533 0.93091 0.91135 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.55 10.24 -55.14 -0.56 -4.11 16 3 C 0.04 0.29 6.42 36.00 0.23 0.52 16 4 C 0.51 5.24 7.91 -10.99 -0.09 5.15 16 5 O -0.51 -8.29 16.50 -14.35 -0.24 -8.52 16 6 N -0.73 -5.24 5.56 -60.29 -0.33 -5.57 16 7 C 0.13 1.35 4.96 -4.04 -0.02 1.33 16 8 C -0.15 -1.12 4.16 -27.88 -0.12 -1.24 16 9 C 0.51 6.63 7.70 -10.99 -0.08 6.54 16 10 O -0.53 -9.68 15.39 5.56 0.09 -9.60 16 11 N -0.61 -7.19 2.97 -172.81 -0.51 -7.71 16 12 C 0.11 0.78 6.34 -3.71 -0.02 0.75 16 13 C -0.13 -1.01 5.36 -26.61 -0.14 -1.15 16 14 C -0.08 -0.89 2.23 -90.58 -0.20 -1.09 16 15 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.15 -1.55 8.82 37.16 0.33 -1.23 16 17 C -0.11 -1.56 1.92 -90.53 -0.17 -1.73 16 18 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 19 C 0.16 3.06 5.41 -4.04 -0.02 3.03 16 20 N -0.76 -18.36 5.18 -59.91 -0.31 -18.67 16 21 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 22 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -30.09 13.97 55.49 0.78 -29.31 16 25 Si 0.88 23.64 27.73 -169.99 -4.71 18.92 16 26 H -0.28 -7.63 7.11 56.52 0.40 -7.22 16 27 H -0.29 -7.84 7.11 56.52 0.40 -7.43 16 28 H -0.28 -7.16 6.52 56.52 0.37 -6.79 16 29 C 0.12 1.78 5.51 -3.74 -0.02 1.76 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.40 1.12 8.47 -40.82 -0.35 0.78 16 36 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 37 H 0.08 1.02 8.10 -51.92 -0.42 0.60 16 38 H 0.10 0.50 7.69 -51.93 -0.40 0.10 16 39 H 0.10 0.46 7.94 -51.93 -0.41 0.05 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.35 5.93 -51.93 -0.31 0.05 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.80 6.30 -51.93 -0.33 0.47 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.04 0.66 6.15 -51.93 -0.32 0.34 16 49 H 0.36 8.88 4.75 -40.82 -0.19 8.68 16 50 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 51 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.10 1.86 6.20 -51.93 -0.32 1.54 16 LS Contribution 411.98 15.07 6.21 6.21 Total: -1.00 -40.52 411.98 -8.06 -48.58 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.98 Total: 3.02 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 0.53 Total: 6.76 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.38 Total: -61.26 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.72 Total: -22.23 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.71 Total: 18.92 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -40.52 -8.06 -48.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.389 kcal (2) G-P(sol) polarization free energy of solvation -40.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds