Wall clock time and date at job start Wed Apr 1 2020 00:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00168 * 2 1 4 4 C 1.50697 * 109.46995 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00473 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99847 * 179.97438 * 4 3 2 7 7 C 1.46494 * 120.00159 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47553 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47371 * 180.02562 * 8 7 6 10 10 O 1.21275 * 119.99920 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.46931 * 120.62930 * 0.02562 * 11 9 8 13 13 C 1.53195 * 108.77110 * 126.37290 * 12 11 9 14 14 C 1.53035 * 109.31200 * 54.63842 * 13 12 11 15 15 H 1.08997 * 109.46550 * 58.65370 * 14 13 12 16 16 C 1.53002 * 109.46137 * 178.61273 * 14 13 12 17 17 C 1.53045 * 109.53802 * 298.62997 * 14 13 12 18 18 H 1.09000 * 109.52739 * 301.40109 * 17 14 13 19 19 C 1.53000 * 109.49689 * 181.31568 * 17 14 13 20 20 N 1.46499 * 109.46840 * 175.16149 * 19 17 14 21 21 C 1.36936 * 120.00002 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00140 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00367 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00562 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99699 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47093 * 90.00457 * 25 23 21 27 27 H 1.48504 * 109.47189 * 210.00360 * 25 23 21 28 28 H 1.48500 * 109.47392 * 329.99935 * 25 23 21 29 29 C 1.46919 * 120.62978 * 179.97438 * 11 9 8 30 30 H 1.08994 * 109.47287 * 60.00297 * 1 2 3 31 31 H 1.08998 * 109.47320 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46759 * 300.00103 * 1 2 3 33 33 H 1.08998 * 109.47086 * 59.99972 * 3 2 1 34 34 H 1.08996 * 109.46870 * 300.00040 * 3 2 1 35 35 H 0.97004 * 120.00102 * 0.02562 * 6 4 3 36 36 H 1.09003 * 109.47626 * 59.99846 * 7 6 4 37 37 H 1.09009 * 109.47102 * 300.00127 * 7 6 4 38 38 H 1.09003 * 109.46994 * 59.99197 * 8 7 6 39 39 H 1.09004 * 109.46810 * 299.99590 * 8 7 6 40 40 H 1.08998 * 109.58550 * 246.16275 * 12 11 9 41 41 H 1.08995 * 109.58730 * 6.44618 * 12 11 9 42 42 H 1.09005 * 109.49531 * 174.58550 * 13 12 11 43 43 H 1.08993 * 109.49943 * 294.68525 * 13 12 11 44 44 H 1.09002 * 109.47420 * 180.02562 * 16 14 13 45 45 H 1.09003 * 109.46607 * 300.06743 * 16 14 13 46 46 H 1.08998 * 109.47276 * 60.06703 * 16 14 13 47 47 H 1.09002 * 109.47398 * 295.16475 * 19 17 14 48 48 H 1.09001 * 109.47194 * 55.16655 * 19 17 14 49 49 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 50 50 H 0.96993 * 120.00222 * 179.97438 * 24 23 21 51 51 H 1.08999 * 109.58985 * 113.83884 * 29 11 9 52 52 H 1.08992 * 109.58857 * 353.40979 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7369 2.1811 0.0003 8 6 6.3593 3.5788 0.0004 9 6 7.8616 3.4597 -0.0002 10 8 8.3831 2.3648 -0.0002 11 7 8.6255 4.5701 0.0003 12 6 8.0083 5.9034 0.0020 13 6 8.5826 6.7110 1.1703 14 6 10.1098 6.7255 1.0731 15 1 10.4090 7.1620 0.1202 16 6 10.6856 7.5602 2.2189 17 6 10.6423 5.2938 1.1678 18 1 10.3231 4.8479 2.1098 19 6 12.1709 5.3123 1.1035 20 7 12.6846 3.9559 1.3098 21 6 14.0343 3.7253 1.2949 22 1 14.7202 4.5435 1.1314 23 6 14.5212 2.4401 1.4898 24 7 15.8185 2.2185 1.4759 25 14 13.3350 1.0251 1.7732 26 1 12.9657 0.4199 0.4684 27 1 13.9837 -0.0009 2.6287 28 1 12.1128 1.5312 2.4478 29 6 10.0913 4.4701 0.0003 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.8594 3.1725 -0.0001 36 1 6.0586 1.6398 -0.8895 37 1 6.0585 1.6404 0.8905 38 1 6.0375 4.1197 0.8904 39 1 6.0378 4.1197 -0.8896 40 1 8.2307 6.4102 -0.9369 41 1 6.9289 5.8062 0.1180 42 1 8.2056 7.7328 1.1263 43 1 8.2823 6.2522 2.1122 44 1 11.7733 7.5711 2.1496 45 1 10.3064 8.5800 2.1516 46 1 10.3872 7.1237 3.1720 47 1 12.4891 5.6768 0.1268 48 1 12.5593 5.9700 1.8811 49 1 12.0687 3.2211 1.4570 50 1 16.1587 1.3205 1.6125 51 1 10.4842 4.8598 -0.9388 52 1 10.3865 3.4275 0.1177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132875510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:57 Heat of formation + Delta-G solvation = -140.661483 kcal Electronic energy + Delta-G solvation = -30116.448665 eV Core-core repulsion = 25921.960956 eV Total energy + Delta-G solvation = -4194.487709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.49826 -40.80849 -39.32715 -38.43921 -36.77692 -36.30937 -35.10788 -33.71316 -32.64453 -31.67990 -29.83485 -29.10505 -27.63153 -26.75537 -25.08938 -24.51545 -23.73135 -22.55344 -21.92536 -21.25062 -19.93088 -19.63165 -18.41585 -18.31361 -17.54467 -17.43272 -16.98147 -16.88979 -16.74725 -16.27823 -15.96909 -15.84384 -15.49587 -15.38972 -15.12036 -14.86971 -14.80867 -14.59326 -14.22272 -14.09608 -14.02902 -13.95068 -13.42329 -13.32987 -13.15660 -13.00489 -12.74500 -12.63349 -12.60360 -12.50280 -12.34827 -12.23572 -12.00611 -11.90832 -11.77849 -11.32685 -11.22277 -11.06812 -11.01914 -10.76752 -10.75794 -10.24039 -9.65581 -9.32019 -8.09516 -5.40444 1.28974 1.33932 1.37040 1.51769 1.57070 1.62729 2.12368 2.39323 3.12167 3.22735 3.46799 3.51998 3.71742 3.78717 3.82504 3.83198 4.01668 4.04438 4.09276 4.21384 4.28419 4.30309 4.35183 4.49592 4.50579 4.58438 4.59262 4.62444 4.74855 4.78089 4.80347 4.85671 4.88595 4.89468 4.95070 5.00374 5.08555 5.14515 5.22632 5.26484 5.29275 5.46539 5.55126 5.59352 5.71263 6.05508 6.15921 6.41250 6.53983 7.01968 7.14133 7.22248 7.80113 7.95986 9.11980 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.002351 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.069797 B =11907.051979 C =14010.632048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.048 3.952 4 C 0.501 3.499 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.138 3.862 8 C -0.130 4.130 9 C 0.502 3.498 10 O -0.599 6.599 11 N -0.607 5.607 12 C 0.098 3.902 13 C -0.123 4.123 14 C -0.080 4.080 15 H 0.083 0.917 16 C -0.148 4.148 17 C -0.092 4.092 18 H 0.056 0.944 19 C 0.157 3.843 20 N -0.762 5.762 21 C -0.228 4.228 22 H 0.066 0.934 23 C -0.055 4.055 24 N -0.978 5.978 25 Si 0.942 3.058 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.266 1.266 29 C 0.120 3.880 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.426 0.574 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.029 0.971 48 H 0.038 0.962 49 H 0.360 0.640 50 H 0.258 0.742 51 H 0.073 0.927 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.856 16.065 -3.706 41.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.031 4.031 4 C 0.288 3.712 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.013 3.987 8 C -0.169 4.169 9 C 0.291 3.709 10 O -0.480 6.480 11 N -0.339 5.339 12 C -0.022 4.022 13 C -0.161 4.161 14 C -0.099 4.099 15 H 0.101 0.899 16 C -0.205 4.205 17 C -0.112 4.112 18 H 0.075 0.925 19 C 0.031 3.969 20 N -0.407 5.407 21 C -0.359 4.359 22 H 0.084 0.916 23 C -0.247 4.247 24 N -0.628 5.628 25 Si 0.771 3.229 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.192 1.192 29 C -0.004 4.004 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.107 0.893 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.056 0.944 49 H 0.193 0.807 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -36.913 14.649 -3.726 39.888 hybrid contribution 0.377 -1.254 0.285 1.340 sum -36.536 13.395 -3.442 39.066 Atomic orbital electron populations 1.23027 0.78131 1.04021 1.01866 1.87981 1.22306 1.27258 1.95852 1.22410 0.88023 0.86697 1.05944 1.21204 0.90714 0.83964 0.75334 1.90765 1.76061 1.29301 1.50280 1.45546 1.05750 1.09544 1.75247 1.20781 0.79450 0.97087 1.01379 1.21788 0.88667 0.97686 1.08764 1.21302 0.91088 0.83324 0.75172 1.90780 1.76295 1.28862 1.52078 1.48279 1.05819 1.07597 1.72179 1.22233 0.99690 0.80264 1.00055 1.21990 0.93389 1.02222 0.98499 1.21097 0.96476 0.91924 1.00360 0.89874 1.21874 1.00662 1.00308 0.97632 1.21621 0.94028 0.97889 0.97674 0.92527 1.20953 0.92169 0.85276 0.98499 1.42887 1.03100 1.06412 1.88342 1.19077 0.83497 0.94038 1.39259 0.91632 1.25304 0.96826 0.99520 1.03058 1.69834 1.12554 1.21375 1.59086 0.85614 0.79053 0.80378 0.77829 1.21406 1.21564 1.19187 1.21416 0.80085 1.00196 0.98674 0.91885 0.89301 0.91958 0.86617 0.86505 0.73452 0.93527 0.93854 0.84113 0.83779 0.89331 0.85630 0.86971 0.91877 0.93682 0.90214 0.93394 0.95326 0.94429 0.80730 0.93288 0.90838 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.56 10.24 -129.94 -1.33 -8.89 16 3 C 0.05 0.49 6.42 71.23 0.46 0.94 16 4 C 0.50 9.80 7.91 87.66 0.69 10.49 16 5 O -0.59 -19.99 16.50 16.00 0.26 -19.73 16 6 N -0.70 -8.31 5.56 -463.05 -2.57 -10.88 16 7 C 0.14 2.69 4.96 86.38 0.43 3.12 16 8 C -0.13 -1.43 4.16 29.85 0.12 -1.31 16 9 C 0.50 12.34 7.70 87.66 0.67 13.01 16 10 O -0.60 -23.08 15.39 -3.01 -0.05 -23.12 16 11 N -0.61 -12.89 2.97 -819.05 -2.43 -15.32 16 12 C 0.10 0.88 6.34 86.36 0.55 1.43 16 13 C -0.12 -1.26 5.36 30.67 0.16 -1.09 16 14 C -0.08 -1.44 2.23 -10.77 -0.02 -1.46 16 15 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 16 C -0.15 -2.68 8.82 71.98 0.63 -2.05 16 17 C -0.09 -2.65 1.92 -10.73 -0.02 -2.67 16 18 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 19 C 0.16 5.97 5.41 86.38 0.47 6.44 16 20 N -0.76 -37.98 5.18 -343.45 -1.78 -39.76 16 21 C -0.23 -13.60 10.47 84.03 0.88 -12.72 16 22 H 0.07 4.18 8.06 -2.91 -0.02 4.15 16 23 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 24 N -0.98 -65.08 13.97 21.65 0.30 -64.78 16 25 Si 0.94 50.83 27.73 68.60 1.90 52.73 16 26 H -0.29 -15.63 7.11 99.48 0.71 -14.92 16 27 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 28 H -0.27 -13.71 6.52 99.48 0.65 -13.06 16 29 C 0.12 3.61 5.51 86.34 0.48 4.09 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.43 0.22 8.47 -92.71 -0.79 -0.56 16 36 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 37 H 0.04 1.17 8.10 -2.38 -0.02 1.15 16 38 H 0.14 0.51 7.69 -2.39 -0.02 0.49 16 39 H 0.14 0.41 7.94 -2.39 -0.02 0.39 16 40 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.13 0.09 5.93 -2.39 -0.01 0.08 16 42 H 0.11 0.46 8.14 -2.38 -0.02 0.45 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.04 1.01 6.30 -2.39 -0.02 1.00 16 45 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 47 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.04 1.43 6.15 -2.39 -0.01 1.42 16 49 H 0.36 18.19 4.75 -92.71 -0.44 17.75 16 50 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 51 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 52 H 0.05 1.96 6.20 -2.39 -0.01 1.95 16 Total: -1.00 -100.46 411.98 1.16 -99.30 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.36 Total: 13.75 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 7.22 Total: 16.70 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -6.48 Total: -130.74 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -1.11 Total: -51.74 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.90 Total: 52.73 kcal Total: -100.46 1.16 -99.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.361 kcal (2) G-P(sol) polarization free energy of solvation -100.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds