Wall clock time and date at job start Wed Apr 1 2020 00:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00292 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00115 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00376 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47473 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46921 * 120.63059 * 359.72315 * 11 9 8 13 13 C 1.53629 * 108.54224 * 126.36706 * 12 11 9 14 14 C 1.53041 * 109.24036 * 54.85265 * 13 12 11 15 15 H 1.09004 * 109.46092 * 178.49180 * 14 13 12 16 16 C 1.53002 * 109.44610 * 58.52700 * 14 13 12 17 17 C 1.53038 * 109.54157 * 298.51402 * 14 13 12 18 18 H 1.09002 * 109.49670 * 301.41329 * 17 14 13 19 19 C 1.52998 * 109.50024 * 181.31814 * 17 14 13 20 20 N 1.46495 * 109.47548 * 175.15871 * 19 17 14 21 21 C 1.36938 * 120.00488 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99577 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99998 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00656 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46983 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47120 * 119.99875 * 25 23 21 28 28 H 1.48502 * 109.46910 * 239.99943 * 25 23 21 29 29 C 1.46926 * 120.62707 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47037 * 299.99894 * 1 2 3 32 32 H 1.08995 * 109.47393 * 60.00164 * 1 2 3 33 33 H 1.09002 * 109.47123 * 60.00441 * 3 2 1 34 34 H 1.08992 * 109.47308 * 299.99498 * 3 2 1 35 35 H 0.97004 * 120.00228 * 0.02562 * 6 4 3 36 36 H 1.09002 * 109.47129 * 59.99747 * 7 6 4 37 37 H 1.08998 * 109.46845 * 300.00553 * 7 6 4 38 38 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 39 39 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 40 40 H 1.08998 * 109.58542 * 246.19788 * 12 11 9 41 41 H 1.08999 * 109.58977 * 6.62636 * 12 11 9 42 42 H 1.08999 * 109.63120 * 294.86485 * 13 12 11 43 43 H 1.09000 * 109.43244 * 174.72381 * 13 12 11 44 44 H 1.08997 * 109.47054 * 299.93492 * 16 14 13 45 45 H 1.09006 * 109.47053 * 59.94075 * 16 14 13 46 46 H 1.09004 * 109.46644 * 179.97438 * 16 14 13 47 47 H 1.08998 * 109.46875 * 295.16209 * 19 17 14 48 48 H 1.09003 * 109.47159 * 55.15867 * 19 17 14 49 49 H 0.97002 * 119.99608 * 0.02562 * 20 19 17 50 50 H 0.96995 * 120.00702 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.58886 * 353.37482 * 29 11 9 52 52 H 1.08992 * 109.58644 * 113.65764 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7368 2.1813 0.0003 8 6 6.3591 3.5790 0.0004 9 6 7.8614 3.4601 0.0011 10 8 8.3830 2.3651 0.0010 11 7 8.6253 4.5705 0.0008 12 6 8.0080 5.9037 -0.0063 13 6 8.5814 6.7138 1.1664 14 6 10.1087 6.7281 1.0705 15 1 10.5182 7.3244 1.8859 16 6 10.5294 7.3379 -0.2682 17 6 10.6412 5.2967 1.1684 18 1 10.3207 4.8530 2.1111 19 6 12.1697 5.3149 1.1055 20 7 12.6834 3.9591 1.3149 21 6 14.0332 3.7283 1.3005 22 1 14.7190 4.5461 1.1352 23 6 14.5198 2.4435 1.4984 24 7 13.6840 1.4470 1.7003 25 14 16.3611 2.1290 1.4796 26 1 17.0789 3.4058 1.2353 27 1 16.7807 1.5672 2.7885 28 1 16.6873 1.1637 0.3992 29 6 10.0912 4.4706 0.0009 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8593 3.1727 -0.0001 36 1 6.0585 1.6401 -0.8895 37 1 6.0584 1.6407 0.8904 38 1 6.0374 4.1199 0.8904 39 1 6.0375 4.1200 -0.8896 40 1 8.2348 6.4063 -0.9466 41 1 6.9283 5.8072 0.1078 42 1 8.2803 6.2567 2.1090 43 1 8.2043 7.7354 1.1201 44 1 10.1204 6.7415 -1.0836 45 1 10.1502 8.3576 -0.3381 46 1 11.6172 7.3487 -0.3366 47 1 12.4888 5.6775 0.1283 48 1 12.5575 5.9743 1.8820 49 1 12.0674 3.2246 1.4629 50 1 14.0241 0.5493 1.8390 51 1 10.3864 3.4281 0.1197 52 1 10.4838 4.8566 -0.9398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132875512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:38 Heat of formation + Delta-G solvation = -108.149193 kcal Electronic energy + Delta-G solvation = -30107.368774 eV Core-core repulsion = 25914.290903 eV Total energy + Delta-G solvation = -4193.077871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.50418 -39.95341 -38.27140 -37.76723 -35.35573 -34.95139 -33.53931 -31.99475 -31.48507 -29.84407 -29.07955 -27.64249 -26.50084 -25.59532 -24.84159 -23.36740 -23.01126 -21.20913 -21.08115 -19.62261 -18.20197 -17.62089 -17.47944 -17.04174 -16.77742 -16.75949 -16.00951 -15.81390 -15.49600 -14.98132 -14.96712 -14.91792 -14.62662 -14.30434 -13.99414 -13.58187 -13.49047 -13.30314 -13.12694 -12.95804 -12.74774 -12.60106 -12.46484 -12.24922 -11.90742 -11.81285 -11.74495 -11.62666 -11.23618 -11.10322 -10.89292 -10.79180 -10.64021 -10.27472 -10.26084 -10.18578 -10.11476 -9.92224 -9.66865 -9.55377 -9.37286 -8.82157 -8.46539 -6.85280 -5.68237 -2.98259 2.33808 2.38839 2.67559 3.06864 3.48218 3.52803 3.55993 3.66992 4.28048 4.49386 4.49721 4.61774 4.62387 4.67125 4.67647 4.74501 4.82995 4.86039 4.89711 4.91138 5.06499 5.16144 5.23044 5.23376 5.29655 5.54267 5.61024 5.63903 5.64974 5.68042 5.79655 5.81459 5.87404 5.93728 5.99785 6.06730 6.16384 6.30753 6.33399 6.36397 6.51826 6.58191 6.64583 6.78694 6.90318 7.13882 7.47586 7.76106 7.93678 8.25340 8.49266 9.60261 10.18339 10.52204 11.53999 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012180 B = 0.002141 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.265511 B =13074.234067 C =15120.329614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.045 3.955 4 C 0.510 3.490 5 O -0.510 6.510 6 N -0.732 5.732 7 C 0.134 3.866 8 C -0.150 4.150 9 C 0.512 3.488 10 O -0.524 6.524 11 N -0.610 5.610 12 C 0.105 3.895 13 C -0.129 4.129 14 C -0.085 4.085 15 H 0.073 0.927 16 C -0.153 4.153 17 C -0.102 4.102 18 H 0.073 0.927 19 C 0.160 3.840 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.928 5.928 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.119 3.881 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.022 0.978 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.103 0.897 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.146 13.506 -4.634 31.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.294 3.706 5 O -0.384 6.384 6 N -0.386 5.386 7 C 0.011 3.989 8 C -0.191 4.191 9 C 0.299 3.701 10 O -0.399 6.399 11 N -0.344 5.344 12 C -0.018 4.018 13 C -0.167 4.167 14 C -0.104 4.104 15 H 0.092 0.908 16 C -0.210 4.210 17 C -0.121 4.121 18 H 0.092 0.908 19 C 0.032 3.968 20 N -0.378 5.378 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.576 5.576 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.002 4.002 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.232 0.768 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.038 0.962 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.121 0.879 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.184 11.918 -4.652 30.044 hybrid contribution 0.396 0.459 0.124 0.619 sum -26.787 12.378 -4.528 29.854 Atomic orbital electron populations 1.22851 0.80262 1.03479 1.00093 1.88045 1.19861 1.25086 1.95405 1.22227 0.91581 0.87161 1.02596 1.20247 0.88646 0.84631 0.77063 1.90797 1.74486 1.26398 1.46694 1.45848 1.07275 1.08629 1.76888 1.21088 0.77463 0.95752 1.04647 1.21818 0.93728 0.98878 1.04652 1.20246 0.88645 0.84335 0.76908 1.90829 1.74574 1.25953 1.48540 1.48163 1.07570 1.05405 1.73294 1.21862 0.97319 0.83311 0.99309 1.22020 0.96398 0.99843 0.98455 1.21074 0.94268 0.96519 0.98564 0.90849 1.21991 1.02320 0.99666 0.97020 1.21687 0.97249 0.94334 0.98843 0.90849 1.20677 0.89140 0.89149 0.97800 1.42425 1.04870 1.03547 1.86931 1.19231 0.83400 0.93202 1.41489 0.91211 1.24764 0.97560 0.95832 1.02789 1.69677 1.32733 0.99648 1.55585 0.86147 0.85391 0.77642 0.77164 1.20613 1.21922 1.21886 1.21760 0.76828 1.03474 0.98155 0.88987 0.93760 0.93774 0.90180 0.90201 0.76763 0.90195 0.90102 0.88322 0.88414 0.91028 0.90272 0.91479 0.90933 0.92454 0.93177 0.91760 0.95983 0.96226 0.78109 0.93494 0.87863 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.70 10.24 -55.14 -0.56 -4.26 16 3 C 0.04 0.31 6.42 36.01 0.23 0.54 16 4 C 0.51 5.51 7.91 -10.98 -0.09 5.43 16 5 O -0.51 -8.57 16.50 -14.36 -0.24 -8.81 16 6 N -0.73 -5.70 5.56 -60.29 -0.33 -6.03 16 7 C 0.13 1.45 4.96 -4.04 -0.02 1.43 16 8 C -0.15 -1.25 4.16 -27.88 -0.12 -1.36 16 9 C 0.51 7.12 7.70 -10.98 -0.08 7.04 16 10 O -0.52 -10.23 15.40 5.56 0.09 -10.14 16 11 N -0.61 -7.78 2.97 -172.48 -0.51 -8.29 16 12 C 0.11 0.87 5.90 -3.49 -0.02 0.85 16 13 C -0.13 -1.12 5.64 -26.38 -0.15 -1.27 16 14 C -0.09 -0.98 2.71 -90.58 -0.25 -1.22 16 15 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.15 -1.61 8.11 37.16 0.30 -1.31 16 17 C -0.10 -1.60 2.15 -90.48 -0.19 -1.80 16 18 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 19 C 0.16 3.18 5.19 -4.05 -0.02 3.16 16 20 N -0.73 -18.94 5.38 -59.91 -0.32 -19.27 16 21 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 22 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -29.31 13.06 55.49 0.72 -28.58 16 25 Si 0.91 23.06 29.55 -169.99 -5.02 18.03 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 C 0.12 1.94 5.04 -3.69 -0.02 1.92 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.40 1.37 8.47 -40.82 -0.35 1.02 16 36 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 38 H 0.10 0.58 7.70 -51.93 -0.40 0.18 16 39 H 0.10 0.54 7.93 -51.93 -0.41 0.12 16 40 H 0.07 0.54 6.68 -51.93 -0.35 0.19 16 41 H 0.08 0.42 5.93 -51.93 -0.31 0.11 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.60 4.97 -51.93 -0.26 0.35 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 47 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.38 10.71 6.89 -40.82 -0.28 10.42 16 50 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 51 H 0.10 2.17 6.21 -51.93 -0.32 1.85 16 52 H 0.07 1.07 6.70 -51.93 -0.35 0.73 16 LS Contribution 409.05 15.07 6.16 6.16 Total: -1.00 -39.75 409.05 -8.33 -48.08 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.75 Total: 6.00 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 0.44 Total: 7.12 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.44 Total: -62.17 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.72 Total: -23.22 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -39.75 -8.33 -48.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.074 kcal (2) G-P(sol) polarization free energy of solvation -39.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds