Wall clock time and date at job start Wed Apr 1 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00292 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00115 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00376 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47473 * 180.02562 * 7 6 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46921 * 120.63059 * 359.72315 * 11 9 8 13 13 C 1.53629 * 108.54224 * 126.36706 * 12 11 9 14 14 C 1.53041 * 109.24036 * 54.85265 * 13 12 11 15 15 H 1.09004 * 109.46092 * 178.49180 * 14 13 12 16 16 C 1.53002 * 109.44610 * 58.52700 * 14 13 12 17 17 C 1.53038 * 109.54157 * 298.51402 * 14 13 12 18 18 H 1.09002 * 109.49670 * 301.41329 * 17 14 13 19 19 C 1.52998 * 109.50024 * 181.31814 * 17 14 13 20 20 N 1.46495 * 109.47548 * 175.15871 * 19 17 14 21 21 C 1.36938 * 120.00488 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99577 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99998 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00656 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46983 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47120 * 119.99875 * 25 23 21 28 28 H 1.48502 * 109.46910 * 239.99943 * 25 23 21 29 29 C 1.46926 * 120.62707 * 180.02562 * 11 9 8 30 30 H 1.09003 * 109.46966 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47037 * 299.99894 * 1 2 3 32 32 H 1.08995 * 109.47393 * 60.00164 * 1 2 3 33 33 H 1.09002 * 109.47123 * 60.00441 * 3 2 1 34 34 H 1.08992 * 109.47308 * 299.99498 * 3 2 1 35 35 H 0.97004 * 120.00228 * 0.02562 * 6 4 3 36 36 H 1.09002 * 109.47129 * 59.99747 * 7 6 4 37 37 H 1.08998 * 109.46845 * 300.00553 * 7 6 4 38 38 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 39 39 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 40 40 H 1.08998 * 109.58542 * 246.19788 * 12 11 9 41 41 H 1.08999 * 109.58977 * 6.62636 * 12 11 9 42 42 H 1.08999 * 109.63120 * 294.86485 * 13 12 11 43 43 H 1.09000 * 109.43244 * 174.72381 * 13 12 11 44 44 H 1.08997 * 109.47054 * 299.93492 * 16 14 13 45 45 H 1.09006 * 109.47053 * 59.94075 * 16 14 13 46 46 H 1.09004 * 109.46644 * 179.97438 * 16 14 13 47 47 H 1.08998 * 109.46875 * 295.16209 * 19 17 14 48 48 H 1.09003 * 109.47159 * 55.15867 * 19 17 14 49 49 H 0.97002 * 119.99608 * 0.02562 * 20 19 17 50 50 H 0.96995 * 120.00702 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.58886 * 353.37482 * 29 11 9 52 52 H 1.08992 * 109.58644 * 113.65764 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7368 2.1813 0.0003 8 6 6.3591 3.5790 0.0004 9 6 7.8614 3.4601 0.0011 10 8 8.3830 2.3651 0.0010 11 7 8.6253 4.5705 0.0008 12 6 8.0080 5.9037 -0.0063 13 6 8.5814 6.7138 1.1664 14 6 10.1087 6.7281 1.0705 15 1 10.5182 7.3244 1.8859 16 6 10.5294 7.3379 -0.2682 17 6 10.6412 5.2967 1.1684 18 1 10.3207 4.8530 2.1111 19 6 12.1697 5.3149 1.1055 20 7 12.6834 3.9591 1.3149 21 6 14.0332 3.7283 1.3005 22 1 14.7190 4.5461 1.1352 23 6 14.5198 2.4435 1.4984 24 7 13.6840 1.4470 1.7003 25 14 16.3611 2.1290 1.4796 26 1 17.0789 3.4058 1.2353 27 1 16.7807 1.5672 2.7885 28 1 16.6873 1.1637 0.3992 29 6 10.0912 4.4706 0.0009 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8593 3.1727 -0.0001 36 1 6.0585 1.6401 -0.8895 37 1 6.0584 1.6407 0.8904 38 1 6.0374 4.1199 0.8904 39 1 6.0375 4.1200 -0.8896 40 1 8.2348 6.4063 -0.9466 41 1 6.9283 5.8072 0.1078 42 1 8.2803 6.2567 2.1090 43 1 8.2043 7.7354 1.1201 44 1 10.1204 6.7415 -1.0836 45 1 10.1502 8.3576 -0.3381 46 1 11.6172 7.3487 -0.3366 47 1 12.4888 5.6775 0.1283 48 1 12.5575 5.9743 1.8820 49 1 12.0674 3.2246 1.4629 50 1 14.0241 0.5493 1.8390 51 1 10.3864 3.4281 0.1197 52 1 10.4838 4.8566 -0.9398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132875512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:31 Heat of formation + Delta-G solvation = -140.453033 kcal Electronic energy + Delta-G solvation = -30108.769573 eV Core-core repulsion = 25914.290903 eV Total energy + Delta-G solvation = -4194.478670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.54913 -40.80880 -39.38296 -38.42406 -36.63586 -36.28890 -34.89823 -33.48255 -32.52628 -31.36706 -29.69284 -28.63834 -27.46499 -26.70587 -25.85897 -24.90652 -24.09647 -22.55202 -21.91483 -20.75912 -19.38620 -18.91355 -18.37889 -18.31709 -17.55404 -17.40540 -16.92109 -16.83478 -16.75632 -16.37983 -15.92195 -15.80867 -15.66003 -15.37403 -15.30721 -15.01115 -14.69043 -14.44752 -14.23527 -14.03804 -13.96372 -13.75641 -13.21300 -13.14170 -13.05912 -12.90220 -12.66912 -12.60996 -12.48594 -12.41480 -12.33363 -12.10515 -11.96728 -11.91989 -11.69933 -11.34607 -11.20147 -11.03258 -10.95596 -10.75460 -10.74362 -10.22349 -9.54982 -9.02467 -7.96647 -5.27264 1.42814 1.45273 1.53631 1.55381 1.61276 1.65406 2.15822 2.53309 3.13851 3.36344 3.50266 3.66685 3.78303 3.83912 3.86712 3.89350 4.03478 4.13288 4.21899 4.22953 4.31648 4.32132 4.38863 4.51515 4.51903 4.57380 4.60415 4.60649 4.76973 4.80267 4.80842 4.87384 4.89785 4.91409 4.95268 5.04302 5.11952 5.22958 5.27251 5.30033 5.33681 5.44043 5.47173 5.56895 5.64159 6.07082 6.23886 6.45837 6.56136 7.19523 7.24716 7.29059 8.06549 8.27928 9.26986 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012180 B = 0.002141 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.265511 B =13074.234067 C =15120.329614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.049 3.951 4 C 0.500 3.500 5 O -0.585 6.585 6 N -0.704 5.704 7 C 0.139 3.861 8 C -0.128 4.128 9 C 0.499 3.501 10 O -0.598 6.598 11 N -0.606 5.606 12 C 0.096 3.904 13 C -0.123 4.123 14 C -0.081 4.081 15 H 0.076 0.924 16 C -0.149 4.149 17 C -0.089 4.089 18 H 0.048 0.952 19 C 0.158 3.842 20 N -0.749 5.749 21 C -0.244 4.244 22 H 0.080 0.920 23 C -0.083 4.083 24 N -0.973 5.973 25 Si 0.977 3.023 26 H -0.260 1.260 27 H -0.293 1.293 28 H -0.295 1.295 29 C 0.128 3.872 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.426 0.574 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.061 0.939 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.029 0.971 48 H 0.022 0.978 49 H 0.369 0.631 50 H 0.249 0.751 51 H 0.042 0.958 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.018 18.427 -5.216 36.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.030 4.030 4 C 0.287 3.713 5 O -0.464 6.464 6 N -0.360 5.360 7 C 0.014 3.986 8 C -0.168 4.168 9 C 0.288 3.712 10 O -0.479 6.479 11 N -0.338 5.338 12 C -0.024 4.024 13 C -0.161 4.161 14 C -0.100 4.100 15 H 0.095 0.905 16 C -0.206 4.206 17 C -0.109 4.109 18 H 0.066 0.934 19 C 0.031 3.969 20 N -0.391 5.391 21 C -0.375 4.375 22 H 0.098 0.902 23 C -0.274 4.274 24 N -0.624 5.624 25 Si 0.806 3.194 26 H -0.184 1.184 27 H -0.220 1.220 28 H -0.223 1.223 29 C 0.004 3.996 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.265 0.735 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.080 0.920 43 H 0.131 0.869 44 H 0.075 0.925 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.047 0.953 48 H 0.040 0.960 49 H 0.201 0.799 50 H 0.058 0.942 51 H 0.061 0.939 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -30.105 17.020 -5.242 34.978 hybrid contribution 1.266 -0.975 0.293 1.625 sum -28.839 16.045 -4.948 33.371 Atomic orbital electron populations 1.23028 0.78125 1.04022 1.01872 1.87985 1.22320 1.27255 1.95853 1.22406 0.87932 0.86691 1.05962 1.21230 0.90751 0.83952 0.75349 1.90769 1.76073 1.29314 1.50267 1.45539 1.05682 1.09560 1.75244 1.20762 0.79485 0.97068 1.01326 1.21777 0.88597 0.97677 1.08708 1.21345 0.91122 0.83374 0.75317 1.90811 1.76289 1.28928 1.51862 1.48258 1.05818 1.07491 1.72219 1.22352 0.99585 0.80359 1.00141 1.22032 0.93535 1.02205 0.98342 1.21084 0.96823 0.92624 0.99486 0.90532 1.21960 1.01107 1.01437 0.96094 1.21539 0.94344 0.97705 0.97264 0.93366 1.20896 0.92159 0.86046 0.97782 1.42706 1.04016 1.05525 1.86856 1.19715 0.84848 0.93454 1.39519 0.90184 1.25693 1.02408 0.95757 1.03584 1.69879 1.34911 0.99821 1.57800 0.85014 0.79805 0.77969 0.76617 1.18389 1.22046 1.22254 1.21331 0.79943 0.99882 0.98405 0.89297 0.91958 0.91863 0.86598 0.86452 0.73452 0.93563 0.93996 0.84191 0.83723 0.89185 0.85723 0.92002 0.86879 0.92472 0.89928 0.93827 0.95267 0.95962 0.79938 0.94179 0.93886 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -8.04 10.24 -129.94 -1.33 -9.37 16 3 C 0.05 0.56 6.42 71.24 0.46 1.01 16 4 C 0.50 10.61 7.91 87.66 0.69 11.30 16 5 O -0.59 -21.05 16.50 15.98 0.26 -20.79 16 6 N -0.70 -9.61 5.56 -463.06 -2.57 -12.19 16 7 C 0.14 3.05 4.96 86.38 0.43 3.48 16 8 C -0.13 -1.75 4.16 29.85 0.12 -1.63 16 9 C 0.50 14.01 7.70 87.66 0.67 14.68 16 10 O -0.60 -25.71 15.40 -3.03 -0.05 -25.75 16 11 N -0.61 -14.85 2.97 -818.00 -2.43 -17.27 16 12 C 0.10 1.12 5.90 86.51 0.51 1.63 16 13 C -0.12 -1.55 5.64 30.82 0.17 -1.37 16 14 C -0.08 -1.66 2.71 -10.77 -0.03 -1.68 16 15 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 16 C -0.15 -2.66 8.11 71.98 0.58 -2.08 16 17 C -0.09 -2.87 2.15 -10.70 -0.02 -2.89 16 18 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 19 C 0.16 6.44 5.19 86.38 0.45 6.89 16 20 N -0.75 -40.75 5.38 -343.47 -1.85 -42.59 16 21 C -0.24 -14.36 9.99 84.03 0.84 -13.52 16 22 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 23 C -0.08 -5.06 5.50 84.86 0.47 -4.60 16 24 N -0.97 -64.72 13.06 21.65 0.28 -64.44 16 25 Si 0.98 48.75 29.55 68.60 2.03 50.78 16 26 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 29 C 0.13 4.36 5.04 86.38 0.44 4.80 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.12 0.47 8.14 -2.39 -0.02 0.46 16 34 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.43 0.94 8.47 -92.71 -0.79 0.15 16 36 H 0.05 1.33 8.10 -2.39 -0.02 1.32 16 37 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 38 H 0.14 0.87 7.70 -2.39 -0.02 0.85 16 39 H 0.14 0.73 7.93 -2.39 -0.02 0.71 16 40 H 0.09 0.83 6.68 -2.39 -0.02 0.81 16 41 H 0.12 0.39 5.93 -2.39 -0.01 0.38 16 42 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 43 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.06 1.03 4.97 -2.39 -0.01 1.01 16 45 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.04 0.96 6.57 -2.39 -0.02 0.94 16 47 H 0.03 1.17 6.72 -2.39 -0.02 1.15 16 48 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.37 22.20 6.89 -92.71 -0.64 21.56 16 50 H 0.25 16.07 8.31 -92.71 -0.77 15.30 16 51 H 0.04 2.00 6.21 -2.39 -0.01 1.99 16 52 H 0.07 2.32 6.70 -2.39 -0.02 2.30 16 Total: -1.00 -101.12 409.05 0.89 -100.22 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.49 Total: 23.90 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 7.03 Total: 17.49 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -6.56 Total: -136.49 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -1.11 Total: -55.91 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -101.12 0.89 -100.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.231 kcal (2) G-P(sol) polarization free energy of solvation -101.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds