Wall clock time and date at job start Wed Apr 1 2020 00:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00426 * 2 1 4 4 C 1.50700 * 109.47309 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99870 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99872 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99828 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47184 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47063 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00035 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99707 * 179.97438 * 9 8 7 12 12 C 1.46921 * 120.63351 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77411 * 233.63167 * 12 11 9 14 14 C 1.53043 * 109.31132 * 305.35957 * 13 12 11 15 15 H 1.09002 * 109.46131 * 301.34824 * 14 13 12 16 16 C 1.53001 * 109.44748 * 181.37889 * 14 13 12 17 17 C 1.53046 * 109.53475 * 61.36818 * 14 13 12 18 18 H 1.08995 * 109.49919 * 58.61932 * 17 14 13 19 19 C 1.53006 * 109.49435 * 178.68408 * 17 14 13 20 20 N 1.46495 * 109.46960 * 185.00197 * 19 17 14 21 21 C 1.36936 * 119.99962 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00154 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00066 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00067 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99963 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47150 * 89.99707 * 25 23 21 27 27 H 1.48494 * 109.47551 * 209.99975 * 25 23 21 28 28 H 1.48501 * 109.47141 * 330.00183 * 25 23 21 29 29 C 1.46925 * 120.62854 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.47238 * 300.00010 * 1 2 3 31 31 H 1.09005 * 109.46830 * 59.99792 * 1 2 3 32 32 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46855 * 59.99719 * 3 2 1 34 34 H 1.08997 * 109.47121 * 299.99861 * 3 2 1 35 35 H 0.96997 * 120.00328 * 359.97438 * 6 4 3 36 36 H 1.09005 * 109.47265 * 60.00142 * 7 6 4 37 37 H 1.08997 * 109.47086 * 300.00053 * 7 6 4 38 38 H 1.08996 * 109.46929 * 59.99552 * 8 7 6 39 39 H 1.09003 * 109.46629 * 299.99722 * 8 7 6 40 40 H 1.09002 * 109.58756 * 353.41101 * 12 11 9 41 41 H 1.09002 * 109.59282 * 113.83967 * 12 11 9 42 42 H 1.09004 * 109.49733 * 185.41012 * 13 12 11 43 43 H 1.08994 * 109.50132 * 65.31225 * 13 12 11 44 44 H 1.08992 * 109.47480 * 299.96774 * 16 14 13 45 45 H 1.08996 * 109.47171 * 59.97125 * 16 14 13 46 46 H 1.09008 * 109.46811 * 179.97438 * 16 14 13 47 47 H 1.09001 * 109.46991 * 304.99842 * 19 17 14 48 48 H 1.09000 * 109.47170 * 64.99839 * 19 17 14 49 49 H 0.97002 * 120.00280 * 359.97438 * 20 19 17 50 50 H 0.96999 * 119.99848 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.59222 * 6.58108 * 29 11 9 52 52 H 1.09006 * 109.70276 * 246.22737 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7370 2.1809 0.0003 8 6 6.3594 3.5786 0.0004 9 6 7.8616 3.4595 -0.0002 10 8 8.3831 2.3645 -0.0002 11 7 8.6256 4.5699 -0.0007 12 6 8.0085 5.9032 -0.0013 13 6 8.5819 6.7113 -1.1696 14 6 10.1092 6.7258 -1.0736 15 1 10.4091 7.1617 -0.1207 16 6 10.6837 7.5609 -2.2196 17 6 10.6415 5.2941 -1.1694 18 1 10.3216 4.8492 -2.1116 19 6 12.1702 5.3124 -1.1063 20 7 12.6839 3.9568 -1.3175 21 6 14.0336 3.7262 -1.3034 22 1 14.7194 4.5437 -1.1370 23 6 14.5204 2.4416 -1.5030 24 7 15.8177 2.2200 -1.4900 25 14 13.3342 1.0274 -1.7901 26 1 13.0737 0.8875 -3.2454 27 1 13.9282 -0.2304 -1.2703 28 1 12.0573 1.3010 -1.0829 29 6 10.0914 4.4699 -0.0007 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8595 3.1724 -0.0009 36 1 6.0586 1.6396 -0.8895 37 1 6.0585 1.6403 0.8904 38 1 6.0377 4.1195 0.8903 39 1 6.0378 4.1195 -0.8896 40 1 6.9292 5.8062 -0.1190 41 1 8.2317 6.4096 0.9378 42 1 8.2049 7.7331 -1.1248 43 1 8.2808 6.2529 -2.1115 44 1 10.3840 7.1251 -3.1726 45 1 10.3051 8.5807 -2.1513 46 1 11.7716 7.5718 -2.1514 47 1 12.5579 5.9728 -1.8820 48 1 12.4892 5.6737 -0.1287 49 1 12.0679 3.2224 -1.4666 50 1 16.1577 1.3223 -1.6291 51 1 10.3867 3.4272 -0.1180 52 1 10.4863 4.8580 0.9383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132875513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:56 Heat of formation + Delta-G solvation = -107.985625 kcal Electronic energy + Delta-G solvation = -30116.560083 eV Core-core repulsion = 25923.489306 eV Total energy + Delta-G solvation = -4193.070778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.55501 -40.01063 -38.28987 -37.83169 -35.45537 -35.19428 -33.83310 -32.13398 -31.59583 -30.24866 -29.25293 -28.24134 -26.56389 -25.86415 -24.12476 -23.12610 -22.76227 -21.17782 -21.14590 -20.10652 -19.05957 -17.78131 -17.61787 -17.38439 -16.88154 -16.84301 -16.16514 -15.96684 -15.51507 -15.06951 -14.92552 -14.80576 -14.49081 -14.19632 -14.07066 -13.85412 -13.51641 -13.39886 -13.32282 -13.10246 -12.83914 -12.63093 -12.53365 -12.32403 -11.96313 -11.95538 -11.87786 -11.79495 -11.66705 -11.28320 -11.01005 -10.89082 -10.66760 -10.36951 -10.31624 -10.22449 -10.15587 -10.02442 -9.77142 -9.51428 -9.46487 -8.85249 -8.65494 -7.17353 -5.71560 -3.07101 2.25905 2.30146 2.51904 2.93086 3.47499 3.54727 3.57371 3.59901 4.18568 4.37881 4.39936 4.53685 4.55459 4.60492 4.65308 4.67162 4.72423 4.72489 4.81104 4.86132 4.95685 5.00160 5.13376 5.18855 5.22529 5.48228 5.51947 5.54176 5.56662 5.59429 5.67025 5.70820 5.73573 5.80655 5.82121 5.97445 5.99565 6.08213 6.22140 6.32551 6.34095 6.45898 6.46675 6.70581 6.76368 7.05451 7.31574 7.85451 8.03715 8.08938 8.47318 9.26507 9.99485 10.18434 11.46522 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.002351 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.145951 B =11909.424515 C =14011.546238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.510 3.490 5 O -0.511 6.511 6 N -0.732 5.732 7 C 0.134 3.866 8 C -0.151 4.151 9 C 0.514 3.486 10 O -0.529 6.529 11 N -0.611 5.611 12 C 0.106 3.894 13 C -0.130 4.130 14 C -0.084 4.084 15 H 0.073 0.927 16 C -0.149 4.149 17 C -0.106 4.106 18 H 0.073 0.927 19 C 0.163 3.837 20 N -0.757 5.757 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.879 3.121 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.272 1.272 29 C 0.117 3.883 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.036 0.964 48 H 0.027 0.973 49 H 0.362 0.638 50 H 0.259 0.741 51 H 0.098 0.902 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.036 12.187 3.553 35.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.384 6.384 6 N -0.387 5.387 7 C 0.011 3.989 8 C -0.191 4.191 9 C 0.300 3.700 10 O -0.405 6.405 11 N -0.345 5.345 12 C -0.017 4.017 13 C -0.168 4.168 14 C -0.103 4.103 15 H 0.091 0.909 16 C -0.206 4.206 17 C -0.126 4.126 18 H 0.092 0.908 19 C 0.035 3.965 20 N -0.402 5.402 21 C -0.375 4.375 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.709 3.291 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.198 1.198 29 C -0.005 4.005 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.233 0.767 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.195 0.805 50 H 0.069 0.931 51 H 0.116 0.884 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -32.007 10.619 3.581 33.912 hybrid contribution -1.142 -0.199 -0.245 1.185 sum -33.148 10.419 3.336 34.907 Atomic orbital electron populations 1.22857 0.80201 1.03510 1.00121 1.88040 1.19911 1.25059 1.95409 1.22224 0.91501 0.87204 1.02636 1.20258 0.88684 0.84597 0.76996 1.90793 1.74513 1.26405 1.46708 1.45840 1.07206 1.08685 1.76937 1.21078 0.77594 0.95697 1.04579 1.21820 0.93496 0.98967 1.04808 1.20274 0.88754 0.84244 0.76690 1.90807 1.74688 1.26072 1.48907 1.48177 1.07483 1.05604 1.73204 1.21770 0.97509 0.83103 0.99303 1.21996 0.96317 0.99973 0.98492 1.21079 0.93933 0.95484 0.99790 0.90858 1.21891 1.02035 0.98690 0.98007 1.21782 0.97345 0.94701 0.98732 0.90824 1.20706 0.88882 0.88253 0.98647 1.42771 1.04844 1.04084 1.88549 1.19021 0.81687 0.95008 1.41757 0.89258 1.24653 0.95486 0.97067 1.01756 1.69700 1.10845 1.20987 1.56661 0.86622 0.81168 0.83108 0.78177 1.21154 1.21685 1.19770 1.21762 0.77090 1.03195 0.98427 0.93743 0.93741 0.88962 0.90167 0.90150 0.76704 0.90191 0.90209 0.88241 0.88216 0.90063 0.91133 0.90701 0.91463 0.92778 0.93104 0.91434 0.94656 0.95557 0.80532 0.93095 0.88352 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.55 10.23 -55.14 -0.56 -4.11 16 3 C 0.04 0.29 6.42 36.01 0.23 0.52 16 4 C 0.51 5.24 7.91 -10.98 -0.09 5.15 16 5 O -0.51 -8.29 16.50 -14.35 -0.24 -8.52 16 6 N -0.73 -5.24 5.56 -60.29 -0.33 -5.58 16 7 C 0.13 1.35 4.96 -4.04 -0.02 1.33 16 8 C -0.15 -1.12 4.16 -27.88 -0.12 -1.24 16 9 C 0.51 6.65 7.70 -10.99 -0.08 6.57 16 10 O -0.53 -9.74 15.39 5.56 0.09 -9.65 16 11 N -0.61 -7.22 2.97 -172.75 -0.51 -7.74 16 12 C 0.11 0.78 6.34 -3.71 -0.02 0.76 16 13 C -0.13 -1.01 5.36 -26.61 -0.14 -1.15 16 14 C -0.08 -0.89 2.23 -90.57 -0.20 -1.09 16 15 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 16 C -0.15 -1.55 8.82 37.16 0.33 -1.22 16 17 C -0.11 -1.55 1.92 -90.48 -0.17 -1.73 16 18 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 19 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 20 N -0.76 -18.33 5.18 -59.91 -0.31 -18.64 16 21 C -0.24 -7.09 10.47 -15.06 -0.16 -7.24 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -30.10 13.97 55.49 0.78 -29.32 16 25 Si 0.88 23.54 27.73 -169.99 -4.71 18.83 16 26 H -0.28 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 28 H -0.27 -7.11 6.52 56.52 0.37 -6.74 16 29 C 0.12 1.78 5.52 -3.70 -0.02 1.76 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.40 1.13 8.47 -40.82 -0.35 0.78 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.10 0.47 7.94 -51.93 -0.41 0.06 16 39 H 0.10 0.50 7.69 -51.93 -0.40 0.10 16 40 H 0.08 0.36 5.93 -51.93 -0.31 0.05 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 0.80 6.29 -51.92 -0.33 0.47 16 47 H 0.04 0.67 6.14 -51.93 -0.32 0.35 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.36 8.85 4.76 -40.82 -0.19 8.66 16 50 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 51 H 0.10 1.91 6.22 -51.93 -0.32 1.58 16 52 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 412.01 15.07 6.21 6.21 Total: -1.00 -40.56 412.01 -8.06 -48.62 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.98 Total: 3.11 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 0.53 Total: 6.80 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.38 Total: -61.27 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.72 Total: -22.29 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -4.71 Total: 18.83 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -40.56 -8.06 -48.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.366 kcal (2) G-P(sol) polarization free energy of solvation -40.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds