Wall clock time and date at job start Wed Apr 1 2020 00:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00426 * 2 1 4 4 C 1.50700 * 109.47309 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99870 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99872 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99828 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47184 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47063 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00035 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99707 * 179.97438 * 9 8 7 12 12 C 1.46921 * 120.63351 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77411 * 233.63167 * 12 11 9 14 14 C 1.53043 * 109.31132 * 305.35957 * 13 12 11 15 15 H 1.09002 * 109.46131 * 301.34824 * 14 13 12 16 16 C 1.53001 * 109.44748 * 181.37889 * 14 13 12 17 17 C 1.53046 * 109.53475 * 61.36818 * 14 13 12 18 18 H 1.08995 * 109.49919 * 58.61932 * 17 14 13 19 19 C 1.53006 * 109.49435 * 178.68408 * 17 14 13 20 20 N 1.46495 * 109.46960 * 185.00197 * 19 17 14 21 21 C 1.36936 * 119.99962 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00154 * 359.97438 * 21 20 19 23 23 C 1.38815 * 120.00066 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00067 * 179.97438 * 23 21 20 25 25 Si 1.86799 * 119.99963 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47150 * 89.99707 * 25 23 21 27 27 H 1.48494 * 109.47551 * 209.99975 * 25 23 21 28 28 H 1.48501 * 109.47141 * 330.00183 * 25 23 21 29 29 C 1.46925 * 120.62854 * 179.97438 * 11 9 8 30 30 H 1.09001 * 109.47238 * 300.00010 * 1 2 3 31 31 H 1.09005 * 109.46830 * 59.99792 * 1 2 3 32 32 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46855 * 59.99719 * 3 2 1 34 34 H 1.08997 * 109.47121 * 299.99861 * 3 2 1 35 35 H 0.96997 * 120.00328 * 359.97438 * 6 4 3 36 36 H 1.09005 * 109.47265 * 60.00142 * 7 6 4 37 37 H 1.08997 * 109.47086 * 300.00053 * 7 6 4 38 38 H 1.08996 * 109.46929 * 59.99552 * 8 7 6 39 39 H 1.09003 * 109.46629 * 299.99722 * 8 7 6 40 40 H 1.09002 * 109.58756 * 353.41101 * 12 11 9 41 41 H 1.09002 * 109.59282 * 113.83967 * 12 11 9 42 42 H 1.09004 * 109.49733 * 185.41012 * 13 12 11 43 43 H 1.08994 * 109.50132 * 65.31225 * 13 12 11 44 44 H 1.08992 * 109.47480 * 299.96774 * 16 14 13 45 45 H 1.08996 * 109.47171 * 59.97125 * 16 14 13 46 46 H 1.09008 * 109.46811 * 179.97438 * 16 14 13 47 47 H 1.09001 * 109.46991 * 304.99842 * 19 17 14 48 48 H 1.09000 * 109.47170 * 64.99839 * 19 17 14 49 49 H 0.97002 * 120.00280 * 359.97438 * 20 19 17 50 50 H 0.96999 * 119.99848 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.59222 * 6.58108 * 29 11 9 52 52 H 1.09006 * 109.70276 * 246.22737 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 5.7370 2.1809 0.0003 8 6 6.3594 3.5786 0.0004 9 6 7.8616 3.4595 -0.0002 10 8 8.3831 2.3645 -0.0002 11 7 8.6256 4.5699 -0.0007 12 6 8.0085 5.9032 -0.0013 13 6 8.5819 6.7113 -1.1696 14 6 10.1092 6.7258 -1.0736 15 1 10.4091 7.1617 -0.1207 16 6 10.6837 7.5609 -2.2196 17 6 10.6415 5.2941 -1.1694 18 1 10.3216 4.8492 -2.1116 19 6 12.1702 5.3124 -1.1063 20 7 12.6839 3.9568 -1.3175 21 6 14.0336 3.7262 -1.3034 22 1 14.7194 4.5437 -1.1370 23 6 14.5204 2.4416 -1.5030 24 7 15.8177 2.2200 -1.4900 25 14 13.3342 1.0274 -1.7901 26 1 13.0737 0.8875 -3.2454 27 1 13.9282 -0.2304 -1.2703 28 1 12.0573 1.3010 -1.0829 29 6 10.0914 4.4699 -0.0007 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8595 3.1724 -0.0009 36 1 6.0586 1.6396 -0.8895 37 1 6.0585 1.6403 0.8904 38 1 6.0377 4.1195 0.8903 39 1 6.0378 4.1195 -0.8896 40 1 6.9292 5.8062 -0.1190 41 1 8.2317 6.4096 0.9378 42 1 8.2049 7.7331 -1.1248 43 1 8.2808 6.2529 -2.1115 44 1 10.3840 7.1251 -3.1726 45 1 10.3051 8.5807 -2.1513 46 1 11.7716 7.5718 -2.1514 47 1 12.5579 5.9728 -1.8820 48 1 12.4892 5.6737 -0.1287 49 1 12.0679 3.2224 -1.4666 50 1 16.1577 1.3223 -1.6291 51 1 10.3867 3.4272 -0.1180 52 1 10.4863 4.8580 0.9383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132875513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:59:51 Heat of formation + Delta-G solvation = -140.741335 kcal Electronic energy + Delta-G solvation = -30117.980478 eV Core-core repulsion = 25923.489306 eV Total energy + Delta-G solvation = -4194.491172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.49683 -40.80826 -39.32500 -38.43938 -36.77596 -36.31019 -35.10773 -33.71140 -32.64442 -31.67794 -29.83443 -29.10310 -27.63140 -26.75477 -25.08872 -24.51318 -23.73080 -22.55249 -21.92589 -21.24868 -19.93154 -19.63071 -18.41556 -18.31307 -17.54443 -17.43317 -16.97889 -16.89075 -16.74763 -16.27772 -15.96786 -15.84460 -15.49551 -15.38892 -15.11398 -14.87525 -14.81383 -14.58494 -14.22863 -14.09489 -14.02677 -13.96343 -13.42778 -13.30845 -13.15642 -12.99329 -12.73002 -12.63667 -12.58585 -12.50258 -12.34790 -12.27400 -11.98487 -11.91445 -11.77921 -11.33025 -11.22028 -11.07109 -11.01212 -10.76524 -10.75756 -10.24120 -9.65677 -9.31843 -8.09380 -5.40286 1.29013 1.33613 1.39395 1.51750 1.57091 1.62522 2.12270 2.39733 3.12161 3.22806 3.46757 3.52080 3.71715 3.78705 3.82844 3.83221 4.01599 4.04520 4.09342 4.21379 4.28237 4.30307 4.35031 4.49549 4.50592 4.58579 4.59256 4.62523 4.74740 4.78092 4.80474 4.85868 4.88594 4.89421 4.95241 5.00439 5.08684 5.14721 5.22578 5.26576 5.29294 5.46765 5.55205 5.59465 5.71415 6.05552 6.16003 6.41266 6.54003 7.02169 7.14203 7.22246 7.80358 7.96238 9.12111 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.002351 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.145951 B =11909.424515 C =14011.546238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.048 3.952 4 C 0.501 3.499 5 O -0.585 6.585 6 N -0.705 5.705 7 C 0.138 3.862 8 C -0.129 4.129 9 C 0.502 3.498 10 O -0.599 6.599 11 N -0.606 5.606 12 C 0.098 3.902 13 C -0.123 4.123 14 C -0.080 4.080 15 H 0.082 0.918 16 C -0.148 4.148 17 C -0.092 4.092 18 H 0.058 0.942 19 C 0.157 3.843 20 N -0.762 5.762 21 C -0.228 4.228 22 H 0.065 0.935 23 C -0.055 4.055 24 N -0.978 5.978 25 Si 0.941 3.059 26 H -0.278 1.278 27 H -0.293 1.293 28 H -0.270 1.270 29 C 0.120 3.880 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.426 0.574 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.079 0.921 46 H 0.044 0.956 47 H 0.039 0.961 48 H 0.027 0.973 49 H 0.360 0.640 50 H 0.258 0.742 51 H 0.047 0.953 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.879 16.047 3.741 41.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.031 4.031 4 C 0.288 3.712 5 O -0.464 6.464 6 N -0.361 5.361 7 C 0.013 3.987 8 C -0.169 4.169 9 C 0.291 3.709 10 O -0.480 6.480 11 N -0.339 5.339 12 C -0.022 4.022 13 C -0.161 4.161 14 C -0.099 4.099 15 H 0.101 0.899 16 C -0.205 4.205 17 C -0.112 4.112 18 H 0.076 0.924 19 C 0.031 3.969 20 N -0.407 5.407 21 C -0.359 4.359 22 H 0.083 0.917 23 C -0.247 4.247 24 N -0.629 5.629 25 Si 0.770 3.230 26 H -0.204 1.204 27 H -0.220 1.220 28 H -0.196 1.196 29 C -0.004 4.004 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.045 0.955 49 H 0.193 0.807 50 H 0.067 0.933 51 H 0.066 0.934 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -36.936 14.630 3.768 39.906 hybrid contribution 0.390 -1.255 -0.275 1.342 sum -36.546 13.375 3.493 39.073 Atomic orbital electron populations 1.23028 0.78129 1.04021 1.01868 1.87980 1.22307 1.27260 1.95851 1.22411 0.88020 0.86698 1.05945 1.21205 0.90715 0.83963 0.75333 1.90764 1.76068 1.29294 1.50281 1.45544 1.05744 1.09546 1.75248 1.20779 0.79453 0.97086 1.01374 1.21787 0.88639 0.97688 1.08771 1.21312 0.91093 0.83322 0.75176 1.90786 1.76300 1.28875 1.52073 1.48276 1.05804 1.07599 1.72180 1.22236 0.99699 0.80255 1.00058 1.21995 0.93387 1.02216 0.98509 1.21099 0.96488 0.91928 1.00347 0.89932 1.21872 1.00665 1.00295 0.97638 1.21638 0.94014 0.97871 0.97673 0.92387 1.20954 0.92183 0.85314 0.98454 1.42885 1.03083 1.06435 1.88328 1.19076 0.83474 0.94116 1.39218 0.91660 1.25307 0.96835 0.99531 1.03053 1.69836 1.12578 1.21410 1.59042 0.85620 0.79123 0.80007 0.78222 1.20428 1.21984 1.19555 1.21428 0.80092 1.00183 0.98653 0.91887 0.91955 0.89301 0.86518 0.86602 0.73450 0.93843 0.93553 0.83778 0.84095 0.85619 0.89350 0.86974 0.91826 0.93331 0.90234 0.93682 0.94321 0.95467 0.80710 0.93303 0.93394 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.56 10.23 -129.94 -1.33 -8.89 16 3 C 0.05 0.49 6.42 71.24 0.46 0.94 16 4 C 0.50 9.80 7.91 87.66 0.69 10.50 16 5 O -0.59 -20.00 16.50 16.00 0.26 -19.73 16 6 N -0.70 -8.32 5.56 -463.05 -2.57 -10.89 16 7 C 0.14 2.70 4.96 86.38 0.43 3.13 16 8 C -0.13 -1.44 4.16 29.85 0.12 -1.31 16 9 C 0.50 12.41 7.70 87.66 0.67 13.08 16 10 O -0.60 -23.26 15.39 -3.03 -0.05 -23.31 16 11 N -0.61 -12.97 2.97 -818.85 -2.43 -15.40 16 12 C 0.10 0.89 6.34 86.36 0.55 1.44 16 13 C -0.12 -1.26 5.36 30.67 0.16 -1.09 16 14 C -0.08 -1.44 2.23 -10.76 -0.02 -1.46 16 15 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 16 C -0.15 -2.67 8.82 71.98 0.63 -2.04 16 17 C -0.09 -2.65 1.92 -10.70 -0.02 -2.67 16 18 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 19 C 0.16 5.97 5.41 86.38 0.47 6.44 16 20 N -0.76 -37.97 5.18 -343.45 -1.78 -39.75 16 21 C -0.23 -13.61 10.47 84.03 0.88 -12.73 16 22 H 0.07 4.16 8.06 -2.91 -0.02 4.14 16 23 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 24 N -0.98 -65.11 13.97 21.65 0.30 -64.81 16 25 Si 0.94 50.71 27.73 68.60 1.90 52.61 16 26 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.29 -15.83 7.11 99.48 0.71 -15.12 16 28 H -0.27 -14.30 6.52 99.48 0.65 -13.65 16 29 C 0.12 3.65 5.52 86.37 0.48 4.12 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.43 0.23 8.47 -92.71 -0.79 -0.56 16 36 H 0.04 1.17 8.10 -2.38 -0.02 1.15 16 37 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 38 H 0.14 0.42 7.94 -2.39 -0.02 0.40 16 39 H 0.14 0.51 7.69 -2.39 -0.02 0.49 16 40 H 0.13 0.09 5.93 -2.39 -0.01 0.08 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 46 H 0.04 1.01 6.29 -2.38 -0.01 0.99 16 47 H 0.04 1.47 6.14 -2.39 -0.01 1.46 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.36 18.19 4.76 -92.71 -0.44 17.75 16 50 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 51 H 0.05 1.96 6.22 -2.39 -0.01 1.94 16 52 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -100.68 412.01 1.16 -99.52 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.37 Total: 13.84 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 7.22 Total: 16.81 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -6.48 Total: -130.86 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -1.11 Total: -51.93 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 1.90 Total: 52.61 kcal Total: -100.68 1.16 -99.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132875513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.220 kcal (2) G-P(sol) polarization free energy of solvation -100.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds