Wall clock time and date at job start Wed Apr 1 2020 00:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46865 * 2 1 4 4 C 1.52996 * 109.47384 * 240.00090 * 2 1 3 5 5 C 1.53004 * 109.47384 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47136 * 59.99877 * 5 4 2 7 7 C 1.53005 * 109.46927 * 300.00405 * 6 5 4 8 8 H 1.08997 * 109.46895 * 180.02562 * 7 6 5 9 9 O 1.42906 * 109.46730 * 300.00019 * 7 6 5 10 10 C 1.42903 * 113.99632 * 270.00068 * 9 7 6 11 11 C 1.50703 * 109.46904 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 N 1.46901 * 109.46769 * 179.97438 * 15 14 13 17 17 C 1.46906 * 110.99793 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47010 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00199 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99903 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00015 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00174 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00060 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00009 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47267 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47330 * 120.00360 * 25 23 21 28 28 H 1.48511 * 109.47240 * 240.00353 * 25 23 21 29 29 C 1.52997 * 109.47289 * 59.99940 * 7 6 5 30 30 H 1.08998 * 109.47139 * 300.00009 * 1 2 3 31 31 H 1.09004 * 109.46565 * 60.00140 * 1 2 3 32 32 H 1.09000 * 109.46865 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47046 * 300.00079 * 4 2 1 34 34 H 1.09007 * 109.47090 * 59.99643 * 4 2 1 35 35 H 1.08998 * 109.47139 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.46690 * 299.99438 * 5 4 2 37 37 H 1.08998 * 109.46919 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47211 * 59.99713 * 6 5 4 39 39 H 1.09002 * 109.47196 * 60.00179 * 10 9 7 40 40 H 1.09001 * 109.47404 * 299.99993 * 10 9 7 41 41 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 42 42 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 43 43 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 44 44 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 45 45 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 46 46 H 1.00899 * 111.00283 * 56.04461 * 16 15 14 47 47 H 1.09006 * 109.46661 * 299.99622 * 17 16 15 48 48 H 1.08995 * 109.47087 * 60.00099 * 17 16 15 49 49 H 0.97000 * 119.99903 * 359.97438 * 20 18 17 50 50 H 0.97003 * 120.00238 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.47510 * 60.00287 * 29 7 6 52 52 H 1.08998 * 109.46884 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0796 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2496 8 1 3.9328 -1.2359 2.1395 9 8 4.0463 0.6251 1.2498 10 6 5.3059 0.7956 1.9029 11 6 5.7097 2.2463 1.8442 12 8 4.9896 3.0546 1.2974 13 7 6.8712 2.6455 2.3993 14 6 7.2635 4.0559 2.3427 15 6 8.6128 4.2383 3.0407 16 7 9.0064 5.6524 2.9834 17 6 10.3001 5.8659 3.6459 18 6 10.6697 7.3248 3.5677 19 8 9.9286 8.1095 3.0141 20 7 11.8242 7.7576 4.1120 21 6 12.1607 9.0847 4.0404 22 1 11.5009 9.7833 3.5475 23 6 13.3507 9.5310 4.6020 24 7 14.1538 8.6809 5.2014 25 14 13.8089 11.3393 4.5051 26 1 12.7438 12.0819 3.7846 27 1 13.9524 11.8879 5.8776 28 1 15.0947 11.4858 3.7765 29 6 2.0395 -0.7216 1.2492 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.9335 -1.2360 -2.1386 36 1 3.9338 0.3058 -1.2487 37 1 5.1696 -1.4433 0.0008 38 1 3.7159 -2.4708 0.0002 39 1 6.0598 0.1877 1.4027 40 1 5.2205 0.4845 2.9441 41 1 7.4469 1.9991 2.8369 42 1 6.5097 4.6631 2.8439 43 1 7.3482 4.3679 1.3018 44 1 8.5285 3.9261 4.0817 45 1 9.3663 3.6311 2.5392 46 1 8.2933 6.2428 3.3845 47 1 10.2269 5.5656 4.6912 48 1 11.0654 5.2697 3.1492 49 1 12.4170 7.1301 4.5544 50 1 14.9848 8.9923 5.5932 51 1 1.6758 -1.7491 1.2490 52 1 1.6762 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134619667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:04 Heat of formation + Delta-G solvation = -141.618681 kcal Electronic energy + Delta-G solvation = -28644.604282 eV Core-core repulsion = 24450.075065 eV Total energy + Delta-G solvation = -4194.529216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.26224 -39.42091 -38.33057 -36.77985 -36.16257 -34.38040 -33.75677 -32.64708 -31.26209 -30.89703 -29.82882 -27.75423 -26.77665 -25.74017 -23.84808 -22.93127 -22.16336 -21.66154 -20.84987 -19.97421 -19.29798 -17.94205 -17.55294 -16.95787 -16.58042 -16.14028 -15.89828 -15.75793 -15.66145 -15.13712 -14.94648 -14.55410 -14.38711 -14.24053 -13.97882 -13.79715 -13.49214 -13.35609 -13.17778 -13.07969 -12.76297 -12.58711 -12.39511 -12.21380 -12.19540 -11.93228 -11.78270 -11.53482 -11.48110 -11.43666 -11.25913 -11.05819 -10.89379 -10.64182 -10.38507 -10.34645 -10.23665 -10.00433 -9.86745 -9.53351 -9.28541 -8.51933 -8.14701 -7.97790 -6.43221 -3.83967 2.39879 2.47648 3.15906 3.26759 3.34307 3.56811 3.88609 4.11222 4.24824 4.28147 4.36874 4.42467 4.49468 4.67974 4.70326 4.78191 4.80163 4.85527 4.89615 4.97484 5.05412 5.11535 5.16289 5.20063 5.24779 5.31497 5.36255 5.38110 5.44895 5.50641 5.57826 5.66372 5.70486 5.80698 5.85528 5.88672 5.91513 5.92797 5.95035 5.98087 6.14576 6.22575 6.24114 6.71960 7.07458 7.24353 7.54461 7.55098 8.00076 8.05046 8.59508 9.16696 9.52410 10.03733 10.74572 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036619 B = 0.001275 C = 0.001258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.443301 B =21959.199800 C =22250.130621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.083 0.917 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.061 0.939 9 O -0.349 6.349 10 C 0.044 3.956 11 C 0.512 3.488 12 O -0.515 6.515 13 N -0.729 5.729 14 C 0.122 3.878 15 C 0.050 3.950 16 N -0.666 5.666 17 C 0.053 3.947 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.267 1.267 27 H -0.282 1.282 28 H -0.281 1.281 29 C -0.108 4.108 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.400 0.600 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.353 0.647 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.074 0.926 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 -27.399 -5.193 34.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.101 0.899 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.178 4.178 7 C 0.029 3.971 8 H 0.079 0.921 9 O -0.267 6.267 10 C -0.036 4.036 11 C 0.297 3.703 12 O -0.389 6.389 13 N -0.383 5.383 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.299 5.299 17 C -0.080 4.080 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.146 4.146 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.233 0.767 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.172 0.828 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.092 0.908 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.497 -26.110 -6.601 33.844 hybrid contribution 1.087 -0.240 1.637 1.980 sum -19.410 -26.350 -4.964 33.102 Atomic orbital electron populations 1.21839 0.95462 1.01390 1.01787 1.21074 0.94981 1.00897 0.94045 0.89866 1.21579 0.95503 1.00137 0.97758 1.21434 0.95670 1.01657 0.96672 1.22030 1.00652 0.99390 0.95773 1.22192 0.95054 0.82800 0.97025 0.92081 1.88082 1.34224 1.26929 1.77495 1.22223 0.88585 0.94399 0.98438 1.20219 0.81199 0.90081 0.78840 1.90763 1.51528 1.54601 1.41970 1.45792 1.22269 1.10716 1.59570 1.21288 0.95656 0.80574 1.02662 1.22075 0.95932 0.91611 0.98409 1.59940 1.04893 1.04006 1.61042 1.21672 0.92272 0.97120 0.96947 1.19780 0.83968 0.89027 0.84737 1.90539 1.52097 1.56338 1.47583 1.41858 1.18267 1.09794 1.50072 1.19771 1.04380 0.84424 1.34302 0.87815 1.25259 0.95845 1.00188 0.96617 1.69618 1.12299 1.34942 1.37485 0.85798 0.78539 0.82076 0.77926 1.19172 1.20775 1.20727 1.21675 0.92802 1.01027 0.99054 0.92717 0.92695 0.93022 0.92418 0.92039 0.92319 0.90896 0.91923 0.91089 0.90414 0.90412 0.76674 0.91255 0.90080 0.94909 0.90443 0.82764 0.93713 0.89454 0.77466 0.91924 0.90760 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.09 -0.68 2.58 -90.62 -0.23 -0.91 16 3 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 4 C -0.11 -0.76 5.20 -26.73 -0.14 -0.89 16 5 C -0.12 -0.84 5.78 -26.73 -0.15 -0.99 16 6 C -0.14 -0.83 5.63 -26.73 -0.15 -0.98 16 7 C 0.09 0.57 2.92 -26.73 -0.08 0.49 16 8 H 0.06 0.30 7.78 -51.93 -0.40 -0.11 16 9 O -0.35 -3.33 8.17 -55.14 -0.45 -3.79 16 10 C 0.04 0.32 6.23 36.01 0.22 0.55 16 11 C 0.51 5.60 7.91 -10.98 -0.09 5.52 16 12 O -0.51 -8.29 16.50 -14.35 -0.24 -8.53 16 13 N -0.73 -6.37 5.56 -60.29 -0.33 -6.71 16 14 C 0.12 1.36 5.93 -4.04 -0.02 1.34 16 15 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 16 N -0.67 -10.40 6.13 -115.05 -0.70 -11.10 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.30 7.82 -10.99 -0.09 10.22 16 19 O -0.58 -15.85 15.78 5.54 0.09 -15.76 16 20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 C -0.11 -0.69 4.94 -26.73 -0.13 -0.83 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.69 7.68 -51.93 -0.40 0.29 16 37 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.40 7.87 -51.93 -0.41 -0.01 16 40 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 41 H 0.40 2.11 8.47 -40.82 -0.35 1.76 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.35 5.74 8.43 -39.29 -0.33 5.41 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 50 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 51 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 52 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 421.99 15.07 6.36 6.36 Total: -1.00 -34.82 421.99 -9.74 -44.56 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -9.29 Total: 10.54 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.81 Total: 6.32 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.37 Total: -55.69 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.60 Total: -28.08 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.82 -9.74 -44.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134619667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.061 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds