Wall clock time and date at job start Wed Apr 1 2020 00:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46865 * 2 1 4 4 C 1.52996 * 109.47384 * 240.00090 * 2 1 3 5 5 C 1.53004 * 109.47384 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47136 * 59.99877 * 5 4 2 7 7 C 1.53005 * 109.46927 * 300.00405 * 6 5 4 8 8 H 1.08997 * 109.46895 * 180.02562 * 7 6 5 9 9 O 1.42906 * 109.46730 * 300.00019 * 7 6 5 10 10 C 1.42903 * 113.99632 * 270.00068 * 9 7 6 11 11 C 1.50703 * 109.46904 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 N 1.46901 * 109.46769 * 179.97438 * 15 14 13 17 17 C 1.46906 * 110.99793 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47010 * 180.02562 * 17 16 15 19 19 O 1.21297 * 120.00199 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99903 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00015 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00174 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00060 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00009 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47267 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47330 * 120.00360 * 25 23 21 28 28 H 1.48511 * 109.47240 * 240.00353 * 25 23 21 29 29 C 1.52997 * 109.47289 * 59.99940 * 7 6 5 30 30 H 1.08998 * 109.47139 * 300.00009 * 1 2 3 31 31 H 1.09004 * 109.46565 * 60.00140 * 1 2 3 32 32 H 1.09000 * 109.46865 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47046 * 300.00079 * 4 2 1 34 34 H 1.09007 * 109.47090 * 59.99643 * 4 2 1 35 35 H 1.08998 * 109.47139 * 179.97438 * 5 4 2 36 36 H 1.09004 * 109.46690 * 299.99438 * 5 4 2 37 37 H 1.08998 * 109.46919 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.47211 * 59.99713 * 6 5 4 39 39 H 1.09002 * 109.47196 * 60.00179 * 10 9 7 40 40 H 1.09001 * 109.47404 * 299.99993 * 10 9 7 41 41 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 42 42 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 43 43 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 44 44 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 45 45 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 46 46 H 1.00899 * 111.00283 * 56.04461 * 16 15 14 47 47 H 1.09006 * 109.46661 * 299.99622 * 17 16 15 48 48 H 1.08995 * 109.47087 * 60.00099 * 17 16 15 49 49 H 0.97000 * 119.99903 * 359.97438 * 20 18 17 50 50 H 0.97003 * 120.00238 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.47510 * 60.00287 * 29 7 6 52 52 H 1.08998 * 109.46884 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0796 -1.4434 0.0003 7 6 3.5695 -0.7221 1.2496 8 1 3.9328 -1.2359 2.1395 9 8 4.0463 0.6251 1.2498 10 6 5.3059 0.7956 1.9029 11 6 5.7097 2.2463 1.8442 12 8 4.9896 3.0546 1.2974 13 7 6.8712 2.6455 2.3993 14 6 7.2635 4.0559 2.3427 15 6 8.6128 4.2383 3.0407 16 7 9.0064 5.6524 2.9834 17 6 10.3001 5.8659 3.6459 18 6 10.6697 7.3248 3.5677 19 8 9.9286 8.1095 3.0141 20 7 11.8242 7.7576 4.1120 21 6 12.1607 9.0847 4.0404 22 1 11.5009 9.7833 3.5475 23 6 13.3507 9.5310 4.6020 24 7 14.1538 8.6809 5.2014 25 14 13.8089 11.3393 4.5051 26 1 12.7438 12.0819 3.7846 27 1 13.9524 11.8879 5.8776 28 1 15.0947 11.4858 3.7765 29 6 2.0395 -0.7216 1.2492 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.9335 -1.2360 -2.1386 36 1 3.9338 0.3058 -1.2487 37 1 5.1696 -1.4433 0.0008 38 1 3.7159 -2.4708 0.0002 39 1 6.0598 0.1877 1.4027 40 1 5.2205 0.4845 2.9441 41 1 7.4469 1.9991 2.8369 42 1 6.5097 4.6631 2.8439 43 1 7.3482 4.3679 1.3018 44 1 8.5285 3.9261 4.0817 45 1 9.3663 3.6311 2.5392 46 1 8.2933 6.2428 3.3845 47 1 10.2269 5.5656 4.6912 48 1 11.0654 5.2697 3.1492 49 1 12.4170 7.1301 4.5544 50 1 14.9848 8.9923 5.5932 51 1 1.6758 -1.7491 1.2490 52 1 1.6762 -0.2074 2.1390 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134619667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:04 Heat of formation + Delta-G solvation = -167.873801 kcal Electronic energy + Delta-G solvation = -28645.742789 eV Core-core repulsion = 24450.075065 eV Total energy + Delta-G solvation = -4195.667724 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98579 -40.20629 -40.04450 -37.60981 -37.10666 -35.99683 -35.22127 -33.27358 -33.16067 -31.55068 -30.75936 -28.71506 -27.35770 -27.15099 -25.41974 -23.44638 -23.12451 -22.17867 -21.70559 -21.10147 -20.51032 -19.92324 -18.43484 -17.68328 -17.63286 -17.35867 -16.95161 -16.65038 -16.47026 -16.32051 -15.95503 -15.82909 -15.63757 -15.27833 -14.98735 -14.91529 -14.66335 -14.29281 -14.17838 -13.89660 -13.63761 -13.52861 -13.32223 -13.21702 -13.08999 -12.93799 -12.73872 -12.69709 -12.59075 -12.42221 -12.39444 -12.29268 -12.11887 -11.80648 -11.51849 -11.44714 -11.20621 -10.91662 -10.85528 -10.39472 -10.36778 -10.16133 -10.01569 -9.38219 -8.47341 -5.95808 1.36429 1.42175 1.56044 1.56966 1.75215 2.05011 2.29689 2.86501 3.15584 3.20327 3.55150 3.73966 3.78885 3.84607 3.91105 3.94538 4.10455 4.21699 4.22447 4.29690 4.31636 4.33556 4.41801 4.46278 4.50938 4.55016 4.61746 4.62959 4.71133 4.82151 4.89249 4.90996 4.93296 4.94815 5.00239 5.08087 5.17324 5.32493 5.34489 5.36459 5.41252 5.42670 5.45065 5.64385 5.84783 6.07291 6.21576 6.31692 6.56570 6.60141 7.12764 7.23579 7.56062 8.11945 8.70174 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036619 B = 0.001275 C = 0.001258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.443301 B =21959.199800 C =22250.130621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.045 0.955 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.138 4.138 7 C 0.082 3.918 8 H 0.087 0.913 9 O -0.384 6.384 10 C 0.047 3.953 11 C 0.506 3.494 12 O -0.578 6.578 13 N -0.710 5.710 14 C 0.129 3.871 15 C 0.060 3.940 16 N -0.688 5.688 17 C 0.069 3.931 18 C 0.434 3.566 19 O -0.626 6.626 20 N -0.571 5.571 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.270 1.270 29 C -0.108 4.108 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.421 0.579 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.095 0.905 46 H 0.345 0.655 47 H 0.074 0.926 48 H 0.110 0.890 49 H 0.398 0.602 50 H 0.278 0.722 51 H 0.096 0.904 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.043 -30.450 -4.003 36.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.063 0.937 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.175 4.175 7 C 0.025 3.975 8 H 0.105 0.895 9 O -0.303 6.303 10 C -0.032 4.032 11 C 0.293 3.707 12 O -0.457 6.457 13 N -0.365 5.365 14 C 0.004 3.996 15 C -0.069 4.069 16 N -0.321 5.321 17 C -0.063 4.063 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.164 0.836 47 H 0.092 0.908 48 H 0.128 0.872 49 H 0.232 0.768 50 H 0.087 0.913 51 H 0.115 0.885 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.688 -29.234 -5.374 35.653 hybrid contribution 0.811 0.685 1.239 1.631 sum -18.877 -28.550 -4.135 34.475 Atomic orbital electron populations 1.21819 0.94724 1.02271 1.01410 1.21021 0.95629 0.99078 0.95328 0.93679 1.21565 0.95312 1.00854 0.97022 1.21415 0.95925 1.00093 0.98102 1.22037 1.01044 0.99961 0.94473 1.22389 0.94926 0.81797 0.98379 0.89518 1.88071 1.35230 1.28900 1.78113 1.22349 0.88687 0.91630 1.00560 1.21043 0.80759 0.91430 0.77491 1.90740 1.53526 1.56564 1.44836 1.45583 1.22018 1.10084 1.58840 1.21029 0.95735 0.81874 1.00968 1.22066 0.95719 0.89046 1.00077 1.59907 1.04261 1.06604 1.61328 1.21526 0.93460 0.92156 0.99194 1.20968 0.82586 0.91639 0.82635 1.90509 1.53198 1.58519 1.49058 1.41911 1.19141 1.09097 1.50740 1.19699 1.05131 0.85638 1.36031 0.90514 1.25994 0.95188 1.04149 0.95685 1.69665 1.12544 1.36450 1.37296 0.84897 0.78117 0.77148 0.78327 1.19993 1.19512 1.19569 1.21712 0.93135 1.01892 0.97830 0.93095 0.93149 0.91401 0.90604 0.92875 0.91606 0.94108 0.91301 0.89106 0.87573 0.87150 0.74135 0.92809 0.92690 0.92216 0.88633 0.83616 0.90817 0.87200 0.76816 0.91263 0.88528 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.09 -1.39 2.58 -10.79 -0.03 -1.42 16 3 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 4 C -0.11 -1.44 5.20 30.59 0.16 -1.28 16 5 C -0.12 -1.64 5.78 30.59 0.18 -1.47 16 6 C -0.14 -1.32 5.63 30.60 0.17 -1.15 16 7 C 0.08 0.91 2.92 30.60 0.09 1.00 16 8 H 0.09 0.52 7.78 -2.39 -0.02 0.50 16 9 O -0.38 -7.14 8.17 -129.94 -1.06 -8.20 16 10 C 0.05 0.60 6.23 71.24 0.44 1.04 16 11 C 0.51 10.87 7.91 87.66 0.69 11.57 16 12 O -0.58 -19.65 16.50 16.01 0.26 -19.39 16 13 N -0.71 -11.32 5.56 -463.05 -2.57 -13.89 16 14 C 0.13 2.84 5.93 86.38 0.51 3.35 16 15 C 0.06 1.17 5.80 86.30 0.50 1.67 16 16 N -0.69 -20.76 6.13 -517.92 -3.17 -23.94 16 17 C 0.07 2.21 6.17 85.56 0.53 2.74 16 18 C 0.43 20.47 7.82 87.66 0.69 21.15 16 19 O -0.63 -35.13 15.78 -3.08 -0.05 -35.18 16 20 N -0.57 -29.01 5.29 -306.98 -1.62 -30.64 16 21 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 22 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 23 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 24 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 25 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 C -0.11 -1.25 4.94 30.59 0.15 -1.09 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.04 0.83 7.68 -2.39 -0.02 0.81 16 37 H 0.07 0.58 7.87 -2.39 -0.02 0.56 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 0.74 7.87 -2.39 -0.02 0.72 16 40 H 0.11 0.68 8.08 -2.39 -0.02 0.66 16 41 H 0.42 3.06 8.47 -92.71 -0.79 2.28 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.35 11.26 8.43 -89.69 -0.76 10.50 16 47 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 49 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 50 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 51 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -80.29 421.99 -1.23 -81.51 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -1.35 Total: 36.86 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 6.03 Total: 16.61 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -7.09 Total: -117.19 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -0.85 Total: -62.77 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -80.29 -1.23 -81.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134619667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.360 kcal (2) G-P(sol) polarization free energy of solvation -80.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds