Wall clock time and date at job start Wed Apr 1 2020 00:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 9 9 O 1.42905 * 109.47208 * 180.02562 * 7 6 5 10 10 C 1.42896 * 113.99706 * 90.00038 * 9 7 6 11 11 C 1.50709 * 109.46593 * 180.02562 * 10 9 7 12 12 O 1.21272 * 119.99981 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99318 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99290 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46704 * 180.02562 * 14 13 11 16 16 N 1.46909 * 109.46762 * 179.97438 * 15 14 13 17 17 C 1.46903 * 110.99516 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46572 * 179.97438 * 17 16 15 19 19 O 1.21285 * 120.00085 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99751 * 179.97438 * 18 17 16 21 21 C 1.37088 * 120.00163 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00214 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00280 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99694 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00204 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47002 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46678 * 120.00252 * 25 23 21 28 28 H 1.48493 * 109.47027 * 240.00662 * 25 23 21 29 29 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 30 30 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 32 32 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 33 33 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 34 34 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 35 35 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 37 37 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 38 38 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.47268 * 299.99967 * 10 9 7 40 40 H 1.09000 * 109.47446 * 60.00249 * 10 9 7 41 41 H 0.96998 * 120.00271 * 0.02562 * 13 11 10 42 42 H 1.09000 * 109.46934 * 299.99673 * 14 13 11 43 43 H 1.08991 * 109.47526 * 60.00006 * 14 13 11 44 44 H 1.09000 * 109.46888 * 299.99370 * 15 14 13 45 45 H 1.08996 * 109.47059 * 59.99937 * 15 14 13 46 46 H 1.00902 * 110.99565 * 303.94852 * 16 15 14 47 47 H 1.08998 * 109.46878 * 299.99898 * 17 16 15 48 48 H 1.08993 * 109.47252 * 60.00143 * 17 16 15 49 49 H 0.97004 * 119.99894 * 0.02562 * 20 18 17 50 50 H 0.97003 * 119.99550 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.47375 * 59.99908 * 29 7 6 52 52 H 1.09000 * 109.47140 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 1 3.9331 0.3056 1.2498 9 8 4.0457 -1.3954 2.4167 10 6 5.3053 -0.9156 2.8911 11 6 5.7092 -1.6928 4.1176 12 8 4.9890 -2.5706 4.5435 13 7 6.8703 -1.4114 4.7415 14 6 7.2631 -2.1673 5.9334 15 6 8.6111 -1.6526 6.4423 16 7 9.0048 -2.4102 7.6378 17 6 10.2978 -1.9427 8.1551 18 6 10.6674 -2.7408 9.3788 19 8 9.9268 -3.6134 9.7802 20 7 11.8214 -2.4856 10.0266 21 6 12.1574 -3.2112 11.1401 22 1 11.4976 -3.9877 11.4981 23 6 13.3474 -2.9484 11.8077 24 7 14.1505 -2.0039 11.3719 25 14 13.8056 -3.9376 13.3246 26 1 12.7410 -4.9340 13.6059 27 1 15.0914 -4.6414 13.0867 28 1 13.9488 -3.0242 14.4866 29 6 2.0395 -0.7214 1.2494 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.6767 -0.2076 -2.1392 34 1 1.6767 -1.7490 -1.2490 35 1 3.9334 -1.2354 -2.1389 36 1 3.9337 0.3057 -1.2486 37 1 3.7158 -2.4708 0.0005 38 1 5.1695 -1.4441 0.0006 39 1 6.0594 -1.0451 2.1147 40 1 5.2203 0.1417 3.1422 41 1 7.4457 -0.7085 4.4015 42 1 6.5090 -2.0389 6.7099 43 1 7.3489 -3.2242 5.6814 44 1 9.3654 -1.7806 5.6659 45 1 8.5248 -0.5957 6.6944 46 1 8.2908 -2.3598 8.3491 47 1 11.0636 -2.0734 7.3906 48 1 10.2237 -0.8877 8.4185 49 1 12.4138 -1.7879 9.7054 50 1 14.9811 -1.8202 11.8381 51 1 1.6758 -1.7490 1.2493 52 1 1.6761 -0.2079 2.1395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134619668.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:07 Heat of formation + Delta-G solvation = -169.969987 kcal Electronic energy + Delta-G solvation = -28240.631217 eV Core-core repulsion = 24044.872596 eV Total energy + Delta-G solvation = -4195.758621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97737 -40.18994 -40.02477 -37.78657 -37.30184 -35.99782 -35.22969 -33.27178 -33.22748 -31.57903 -30.66763 -28.67145 -27.32932 -27.20464 -25.42382 -23.35483 -23.12170 -22.19357 -21.74812 -21.09807 -20.71499 -19.92052 -18.42055 -17.93305 -17.63191 -17.33062 -16.89607 -16.79067 -16.51093 -16.20047 -15.87766 -15.77674 -15.64780 -15.28084 -15.09500 -14.95549 -14.74760 -14.30817 -14.12882 -13.99563 -13.76141 -13.52236 -13.39207 -13.31034 -13.29820 -12.93781 -12.74927 -12.59630 -12.45959 -12.40491 -12.36309 -12.11703 -11.97334 -11.84376 -11.51645 -11.43919 -11.32208 -11.27869 -10.92313 -10.43596 -10.36498 -10.17490 -10.01293 -9.37677 -8.47158 -5.95507 1.36620 1.42347 1.54424 1.56187 1.71396 2.05335 2.29790 2.79898 3.10747 3.20577 3.54365 3.70040 3.75547 3.81400 3.92152 4.02208 4.10420 4.15312 4.16832 4.24326 4.26893 4.32095 4.33917 4.46724 4.51338 4.52271 4.53015 4.62141 4.64717 4.77145 4.83829 4.89637 4.94392 4.98363 5.06126 5.09736 5.14070 5.29436 5.29679 5.31592 5.39196 5.40074 5.41457 5.56746 5.85115 6.07568 6.15727 6.32151 6.54283 6.60426 7.13066 7.21531 7.56382 8.12280 8.70380 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.047387 B = 0.001182 C = 0.001169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.742548 B =23685.246968 C =23937.060397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.082 0.918 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.084 0.916 9 O -0.394 6.394 10 C 0.048 3.952 11 C 0.506 3.494 12 O -0.579 6.579 13 N -0.709 5.709 14 C 0.128 3.872 15 C 0.060 3.940 16 N -0.688 5.688 17 C 0.069 3.931 18 C 0.434 3.566 19 O -0.626 6.626 20 N -0.571 5.571 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.270 1.270 29 C -0.112 4.112 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.421 0.579 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.345 0.655 47 H 0.110 0.890 48 H 0.074 0.926 49 H 0.398 0.602 50 H 0.278 0.722 51 H 0.053 0.947 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.855 13.570 -29.282 37.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.179 4.179 7 C 0.030 3.970 8 H 0.102 0.898 9 O -0.313 6.313 10 C -0.031 4.031 11 C 0.293 3.707 12 O -0.457 6.457 13 N -0.364 5.364 14 C 0.003 3.997 15 C -0.069 4.069 16 N -0.321 5.321 17 C -0.063 4.063 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.150 4.150 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.164 0.836 47 H 0.128 0.872 48 H 0.092 0.908 49 H 0.232 0.768 50 H 0.087 0.913 51 H 0.072 0.928 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.497 11.773 -28.916 36.808 hybrid contribution 0.725 0.704 1.147 1.529 sum -18.771 12.477 -27.769 35.765 Atomic orbital electron populations 1.21822 0.94635 1.01811 1.02249 1.21071 0.95945 0.99725 0.93424 0.89981 1.21660 0.95583 1.00574 0.97749 1.21478 0.95539 1.01226 0.96779 1.22048 1.01147 0.99905 0.94835 1.22346 0.94781 0.96052 0.83796 0.89812 1.88032 1.35739 1.61866 1.45664 1.22370 0.88308 0.98452 0.93989 1.21012 0.80826 0.83506 0.85375 1.90738 1.53544 1.34122 1.67338 1.45570 1.21967 1.39585 1.29274 1.21044 0.95784 0.95938 0.86900 1.22069 0.95717 0.95971 0.93156 1.59893 1.04280 1.58305 1.09631 1.21523 0.93468 0.96741 0.94591 1.20971 0.82583 0.86934 0.87350 1.90506 1.53203 1.37193 1.70378 1.41908 1.19190 1.34128 1.25649 1.19697 1.05126 1.16705 1.04960 0.90528 1.25992 0.95177 0.97908 1.01912 1.69667 1.12573 1.31706 1.42023 0.84903 0.78124 0.78025 0.77484 1.19977 1.19581 1.19500 1.21664 0.93395 1.01121 0.98817 0.93203 0.92635 0.91505 0.90591 0.92713 0.91038 0.90572 0.92910 0.91067 0.87334 0.87000 0.74072 0.92758 0.92601 0.88591 0.92203 0.83603 0.87191 0.90817 0.76818 0.91267 0.92835 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 71.98 0.66 -0.58 16 2 C -0.08 -0.72 2.72 -10.79 -0.03 -0.75 16 3 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 4 C -0.12 -0.94 5.20 30.59 0.16 -0.78 16 5 C -0.11 -0.82 5.92 30.59 0.18 -0.64 16 6 C -0.14 -1.58 5.54 30.59 0.17 -1.41 16 7 C 0.09 1.11 2.61 30.59 0.08 1.19 16 8 H 0.08 0.67 7.78 -2.39 -0.02 0.65 16 9 O -0.39 -7.88 9.52 -129.94 -1.24 -9.11 16 10 C 0.05 0.63 6.23 71.24 0.44 1.08 16 11 C 0.51 11.00 7.91 87.66 0.69 11.69 16 12 O -0.58 -19.85 16.50 16.03 0.26 -19.59 16 13 N -0.71 -11.28 5.56 -463.06 -2.57 -13.85 16 14 C 0.13 2.81 5.93 86.38 0.51 3.32 16 15 C 0.06 1.16 5.80 86.30 0.50 1.66 16 16 N -0.69 -20.67 6.13 -517.90 -3.17 -23.84 16 17 C 0.07 2.21 6.17 85.56 0.53 2.73 16 18 C 0.43 20.43 7.82 87.66 0.69 21.11 16 19 O -0.63 -35.08 15.78 -3.05 -0.05 -35.13 16 20 N -0.57 -28.96 5.29 -306.99 -1.62 -30.58 16 21 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 24 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 25 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 26 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 C -0.11 -1.50 4.85 30.60 0.15 -1.35 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.67 7.87 -2.38 -0.02 0.65 16 39 H 0.11 0.78 7.87 -2.39 -0.02 0.76 16 40 H 0.11 0.73 8.08 -2.39 -0.02 0.72 16 41 H 0.42 3.02 8.47 -92.71 -0.79 2.23 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.35 11.21 8.43 -89.69 -0.76 10.46 16 47 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 48 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 50 H 0.28 13.82 8.31 -92.71 -0.77 13.04 16 51 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -80.10 424.06 -1.41 -81.52 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -1.35 Total: 35.39 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.01 Total: 18.97 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -7.09 Total: -116.97 kcal Atomic # 8 Polarization: -62.81 SS G_CDS: -1.02 Total: -63.83 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -80.10 -1.41 -81.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134619668.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.454 kcal (2) G-P(sol) polarization free energy of solvation -80.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds