Wall clock time and date at job start Wed Apr 1 2020 00:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47005 * 2 1 4 4 C 1.52995 * 109.46903 * 120.00385 * 2 1 3 5 5 C 1.53003 * 109.46903 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47383 * 300.00005 * 5 4 2 7 7 C 1.52998 * 109.46947 * 59.99600 * 6 5 4 8 8 H 1.08999 * 109.46762 * 60.00639 * 7 6 5 9 9 O 1.42903 * 109.46910 * 180.02562 * 7 6 5 10 10 C 1.42899 * 114.00144 * 270.00031 * 9 7 6 11 11 C 1.50706 * 109.47352 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00180 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00247 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 O 1.21292 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99767 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99759 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00171 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00074 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99768 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00310 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47191 * 60.00175 * 25 23 21 27 27 H 1.48495 * 109.47229 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47299 * 300.00478 * 25 23 21 29 29 C 1.52997 * 109.47685 * 300.00376 * 7 6 5 30 30 H 1.08999 * 109.47283 * 299.99639 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99685 * 1 2 3 32 32 H 1.08994 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47614 * 60.00310 * 4 2 1 34 34 H 1.09002 * 109.47534 * 299.99756 * 4 2 1 35 35 H 1.09001 * 109.46985 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47099 * 60.00371 * 5 4 2 37 37 H 1.09007 * 109.47131 * 300.00131 * 6 5 4 38 38 H 1.08991 * 109.47351 * 180.02562 * 6 5 4 39 39 H 1.09002 * 109.46639 * 60.00551 * 10 9 7 40 40 H 1.08998 * 109.47564 * 300.00273 * 10 9 7 41 41 H 0.97001 * 119.99992 * 0.02562 * 13 11 10 42 42 H 1.09001 * 109.46535 * 59.99860 * 14 13 11 43 43 H 1.08998 * 109.46918 * 300.00331 * 14 13 11 44 44 H 1.09001 * 109.47393 * 60.00416 * 15 14 13 45 45 H 1.08998 * 109.47408 * 300.00062 * 15 14 13 46 46 H 1.00901 * 110.99869 * 56.04956 * 16 15 14 47 47 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 48 48 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 49 49 H 0.96997 * 120.00713 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99907 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.47265 * 179.97438 * 29 7 6 52 52 H 1.09007 * 109.46962 * 299.99817 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9332 0.3054 -1.2497 9 8 4.0449 -1.3964 -2.4164 10 6 5.3046 -0.9176 -2.8916 11 6 5.7076 -1.6955 -4.1179 12 8 4.9866 -2.5732 -4.5432 13 7 6.8690 -1.4160 -4.7418 14 6 7.2604 -2.1718 -5.9342 15 6 8.6092 -1.6593 -6.4429 16 7 9.0014 -2.4168 -7.6389 17 6 10.2952 -1.9514 -8.1561 18 6 10.6632 -2.7494 -9.3803 19 8 9.9210 -3.6205 -9.7822 20 7 11.8176 -2.4958 -10.0280 21 6 12.1526 -3.2222 -11.1415 22 1 11.4917 -3.9978 -11.4993 23 6 13.3425 -2.9604 -11.8096 24 7 14.1469 -2.0170 -11.3739 25 14 13.7994 -3.9505 -13.3263 26 1 12.7562 -3.7706 -14.3678 27 1 15.1074 -3.4803 -13.8489 28 1 13.8980 -5.3882 -12.9678 29 6 2.0395 -0.7215 -1.2493 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6767 -1.7491 1.2491 34 1 1.6767 -0.2076 2.1392 35 1 3.9333 -1.2354 2.1390 36 1 3.9337 0.3056 1.2487 37 1 3.7158 -2.4710 -0.0003 38 1 5.1694 -1.4442 -0.0004 39 1 6.0588 -1.0475 -2.1154 40 1 5.2202 0.1396 -3.1431 41 1 7.4457 -0.7143 -4.4014 42 1 6.5064 -2.0416 -6.7105 43 1 7.3443 -3.2291 -5.6828 44 1 9.3634 -1.7891 -5.6667 45 1 8.5248 -0.6021 -6.6944 46 1 8.2875 -2.3648 -8.3501 47 1 10.2229 -0.8960 -8.4190 48 1 11.0609 -2.0839 -7.3918 49 1 12.4114 -1.7995 -9.7065 50 1 14.9777 -1.8345 -11.8401 51 1 1.6762 -0.2072 -2.1391 52 1 1.6758 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134619669.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:12 Heat of formation + Delta-G solvation = -143.375463 kcal Electronic energy + Delta-G solvation = -28239.355201 eV Core-core repulsion = 24044.749805 eV Total energy + Delta-G solvation = -4194.605396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.21764 -39.43739 -38.32932 -37.12199 -36.21398 -34.38032 -33.75379 -32.81719 -31.26131 -30.91684 -29.75785 -27.69942 -26.89019 -25.74243 -23.84847 -22.91038 -22.16980 -21.73487 -20.92097 -20.24832 -19.29351 -17.93450 -17.56525 -17.18969 -16.49819 -16.13348 -15.97206 -15.74687 -15.56922 -15.20512 -14.94531 -14.65967 -14.53938 -14.30595 -13.98319 -13.85392 -13.62080 -13.41287 -13.19667 -13.17461 -12.88125 -12.81896 -12.40528 -12.31433 -11.98442 -11.92878 -11.53649 -11.52651 -11.47577 -11.44495 -11.41321 -11.01975 -11.01544 -10.88494 -10.82597 -10.44400 -10.22181 -10.01440 -9.89151 -9.50906 -9.28771 -8.51510 -8.14227 -7.97395 -6.42676 -3.83524 2.39239 2.45039 3.20202 3.25889 3.30507 3.48720 3.89064 4.10633 4.15216 4.20706 4.33770 4.43735 4.45596 4.58094 4.62771 4.68563 4.72796 4.78930 4.86437 4.93747 4.96445 4.97600 5.06102 5.16328 5.16702 5.23606 5.25167 5.35602 5.36535 5.48376 5.53382 5.53659 5.67548 5.70882 5.73137 5.77351 5.80972 5.83429 5.88985 5.93130 5.96510 6.14502 6.24397 6.70575 7.07793 7.24029 7.54439 7.55527 7.99635 8.04962 8.60003 9.16876 9.52722 10.04198 10.74973 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.047388 B = 0.001182 C = 0.001169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.722563 B =23684.555436 C =23936.878246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.143 4.143 7 C 0.089 3.911 8 H 0.061 0.939 9 O -0.356 6.356 10 C 0.045 3.955 11 C 0.512 3.488 12 O -0.515 6.515 13 N -0.728 5.728 14 C 0.121 3.879 15 C 0.050 3.950 16 N -0.666 5.666 17 C 0.053 3.947 18 C 0.439 3.561 19 O -0.582 6.582 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C -0.111 4.111 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.400 0.600 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.353 0.647 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.070 0.930 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.833 11.138 27.570 35.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.154 4.154 6 C -0.181 4.181 7 C 0.032 3.968 8 H 0.079 0.921 9 O -0.274 6.274 10 C -0.035 4.035 11 C 0.296 3.704 12 O -0.389 6.389 13 N -0.383 5.383 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.299 5.299 17 C -0.080 4.080 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.198 1.198 29 C -0.149 4.149 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.233 0.767 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.172 0.828 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.089 0.911 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.515 9.281 27.156 35.276 hybrid contribution 1.071 1.457 -0.653 1.923 sum -19.444 10.737 26.503 34.579 Atomic orbital electron populations 1.21817 0.94733 1.02119 1.01807 1.21096 0.95867 0.99455 0.94301 0.91135 1.21656 0.95361 1.01058 0.97486 1.21488 0.95789 1.00653 0.97514 1.22063 1.00756 1.00921 0.94349 1.22191 0.94989 0.95094 0.84556 0.92077 1.88065 1.34489 1.60513 1.44338 1.22220 0.88360 0.97781 0.95128 1.20218 0.81235 0.84219 0.84705 1.90767 1.51505 1.31200 1.65417 1.45786 1.22200 1.39891 1.30425 1.21293 0.95692 0.96850 0.86372 1.22074 0.95931 0.95272 0.94743 1.59924 1.04891 1.56503 1.08581 1.21667 0.92261 0.96732 0.97330 1.19776 0.83978 0.87464 0.86331 1.90537 1.52025 1.35226 1.68803 1.41841 1.18243 1.34041 1.25791 1.19673 1.04418 1.15909 1.03030 0.87930 1.25256 0.95816 0.97157 0.99603 1.69604 1.12281 1.31270 1.41214 0.85914 0.77578 0.79728 0.80987 1.19892 1.20971 1.19848 1.21649 0.93010 1.02168 0.98070 0.92546 0.92503 0.92472 0.91640 0.91781 0.91527 0.91941 0.90806 0.91807 0.90330 0.90317 0.76652 0.91238 0.90053 0.90431 0.94904 0.82752 0.93719 0.89456 0.77459 0.91816 0.91132 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.19 37.16 0.34 -0.33 16 2 C -0.09 -0.44 2.72 -90.62 -0.25 -0.68 16 3 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 4 C -0.12 -0.55 5.20 -26.73 -0.14 -0.69 16 5 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 6 C -0.14 -0.88 5.54 -26.73 -0.15 -1.03 16 7 C 0.09 0.62 2.61 -26.73 -0.07 0.56 16 8 H 0.06 0.33 7.79 -51.93 -0.40 -0.07 16 9 O -0.36 -3.66 9.52 -55.14 -0.52 -4.18 16 10 C 0.05 0.35 6.23 36.01 0.22 0.57 16 11 C 0.51 5.75 7.91 -10.99 -0.09 5.67 16 12 O -0.51 -8.50 16.50 -14.35 -0.24 -8.74 16 13 N -0.73 -6.47 5.56 -60.30 -0.33 -6.81 16 14 C 0.12 1.37 5.93 -4.04 -0.02 1.35 16 15 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 16 N -0.67 -10.43 6.13 -115.06 -0.70 -11.13 16 17 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 18 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 19 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 20 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 25 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C -0.11 -0.75 4.85 -26.73 -0.13 -0.88 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.06 0.36 7.87 -51.93 -0.41 -0.04 16 39 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 40 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 41 H 0.40 2.14 8.47 -40.82 -0.35 1.79 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.35 5.76 8.43 -39.29 -0.33 5.43 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 50 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 424.06 15.07 6.39 6.39 Total: -1.00 -35.10 424.06 -9.84 -44.94 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -9.34 Total: 9.74 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.82 Total: 7.46 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.37 Total: -55.84 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.67 Total: -28.71 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -35.10 -9.84 -44.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134619669.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.435 kcal (2) G-P(sol) polarization free energy of solvation -35.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds