Wall clock time and date at job start Wed Apr 1 2020 00:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47005 * 2 1 4 4 C 1.52995 * 109.46903 * 120.00385 * 2 1 3 5 5 C 1.53003 * 109.46903 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47383 * 300.00005 * 5 4 2 7 7 C 1.52998 * 109.46947 * 59.99600 * 6 5 4 8 8 H 1.08999 * 109.46762 * 60.00639 * 7 6 5 9 9 O 1.42903 * 109.46910 * 180.02562 * 7 6 5 10 10 C 1.42899 * 114.00144 * 270.00031 * 9 7 6 11 11 C 1.50706 * 109.47352 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00180 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00247 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 O 1.21292 * 120.00024 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99767 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99759 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00171 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00074 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99768 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00310 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47191 * 60.00175 * 25 23 21 27 27 H 1.48495 * 109.47229 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47299 * 300.00478 * 25 23 21 29 29 C 1.52997 * 109.47685 * 300.00376 * 7 6 5 30 30 H 1.08999 * 109.47283 * 299.99639 * 1 2 3 31 31 H 1.09001 * 109.46985 * 59.99685 * 1 2 3 32 32 H 1.08994 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47614 * 60.00310 * 4 2 1 34 34 H 1.09002 * 109.47534 * 299.99756 * 4 2 1 35 35 H 1.09001 * 109.46985 * 179.97438 * 5 4 2 36 36 H 1.08994 * 109.47099 * 60.00371 * 5 4 2 37 37 H 1.09007 * 109.47131 * 300.00131 * 6 5 4 38 38 H 1.08991 * 109.47351 * 180.02562 * 6 5 4 39 39 H 1.09002 * 109.46639 * 60.00551 * 10 9 7 40 40 H 1.08998 * 109.47564 * 300.00273 * 10 9 7 41 41 H 0.97001 * 119.99992 * 0.02562 * 13 11 10 42 42 H 1.09001 * 109.46535 * 59.99860 * 14 13 11 43 43 H 1.08998 * 109.46918 * 300.00331 * 14 13 11 44 44 H 1.09001 * 109.47393 * 60.00416 * 15 14 13 45 45 H 1.08998 * 109.47408 * 300.00062 * 15 14 13 46 46 H 1.00901 * 110.99869 * 56.04956 * 16 15 14 47 47 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 48 48 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 49 49 H 0.96997 * 120.00713 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99907 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.47265 * 179.97438 * 29 7 6 52 52 H 1.09007 * 109.46962 * 299.99817 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2488 6 6 4.0795 -1.4434 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9332 0.3054 -1.2497 9 8 4.0449 -1.3964 -2.4164 10 6 5.3046 -0.9176 -2.8916 11 6 5.7076 -1.6955 -4.1179 12 8 4.9866 -2.5732 -4.5432 13 7 6.8690 -1.4160 -4.7418 14 6 7.2604 -2.1718 -5.9342 15 6 8.6092 -1.6593 -6.4429 16 7 9.0014 -2.4168 -7.6389 17 6 10.2952 -1.9514 -8.1561 18 6 10.6632 -2.7494 -9.3803 19 8 9.9210 -3.6205 -9.7822 20 7 11.8176 -2.4958 -10.0280 21 6 12.1526 -3.2222 -11.1415 22 1 11.4917 -3.9978 -11.4993 23 6 13.3425 -2.9604 -11.8096 24 7 14.1469 -2.0170 -11.3739 25 14 13.7994 -3.9505 -13.3263 26 1 12.7562 -3.7706 -14.3678 27 1 15.1074 -3.4803 -13.8489 28 1 13.8980 -5.3882 -12.9678 29 6 2.0395 -0.7215 -1.2493 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6767 -1.7491 1.2491 34 1 1.6767 -0.2076 2.1392 35 1 3.9333 -1.2354 2.1390 36 1 3.9337 0.3056 1.2487 37 1 3.7158 -2.4710 -0.0003 38 1 5.1694 -1.4442 -0.0004 39 1 6.0588 -1.0475 -2.1154 40 1 5.2202 0.1396 -3.1431 41 1 7.4457 -0.7143 -4.4014 42 1 6.5064 -2.0416 -6.7105 43 1 7.3443 -3.2291 -5.6828 44 1 9.3634 -1.7891 -5.6667 45 1 8.5248 -0.6021 -6.6944 46 1 8.2875 -2.3648 -8.3501 47 1 10.2229 -0.8960 -8.4190 48 1 11.0609 -2.0839 -7.3918 49 1 12.4114 -1.7995 -9.7065 50 1 14.9777 -1.8345 -11.8401 51 1 1.6762 -0.2072 -2.1391 52 1 1.6758 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134619669.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:11 Heat of formation + Delta-G solvation = -169.839264 kcal Electronic energy + Delta-G solvation = -28240.502758 eV Core-core repulsion = 24044.749805 eV Total energy + Delta-G solvation = -4195.752953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.97645 -40.18751 -40.02395 -37.78627 -37.30099 -35.99465 -35.22867 -33.27002 -33.22742 -31.57941 -30.66775 -28.67065 -27.32898 -27.20303 -25.42209 -23.35487 -23.12152 -22.19362 -21.74784 -21.09570 -20.71447 -19.91811 -18.41968 -17.93273 -17.62970 -17.32950 -16.89402 -16.79002 -16.50513 -16.20387 -15.87973 -15.77936 -15.64771 -15.27903 -15.09391 -14.95301 -14.74672 -14.30762 -14.12668 -13.99445 -13.75956 -13.50804 -13.39139 -13.30821 -13.29802 -12.93130 -12.74929 -12.59473 -12.46035 -12.42810 -12.36454 -12.12074 -11.97383 -11.84382 -11.50376 -11.43916 -11.32204 -11.27834 -10.92284 -10.43598 -10.36313 -10.17517 -10.01379 -9.37626 -8.46664 -5.95278 1.40068 1.42316 1.52822 1.54411 1.71375 2.05682 2.29947 2.79953 3.10854 3.20923 3.54454 3.70041 3.75572 3.81400 3.92179 4.02232 4.10391 4.15315 4.16827 4.24352 4.26901 4.32146 4.33930 4.46710 4.51361 4.52271 4.53011 4.62184 4.64737 4.77163 4.83835 4.89625 4.94385 4.98351 5.06073 5.09731 5.14090 5.29433 5.29685 5.31567 5.39199 5.40059 5.41105 5.56745 5.85120 6.07504 6.15759 6.32208 6.54271 6.60628 7.12957 7.21533 7.56500 8.12410 8.70394 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.047388 B = 0.001182 C = 0.001169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.722563 B =23684.555436 C =23936.878246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 H 0.082 0.918 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.084 0.916 9 O -0.394 6.394 10 C 0.048 3.952 11 C 0.506 3.494 12 O -0.579 6.579 13 N -0.709 5.709 14 C 0.128 3.872 15 C 0.060 3.940 16 N -0.688 5.688 17 C 0.069 3.931 18 C 0.434 3.566 19 O -0.626 6.626 20 N -0.571 5.571 21 C -0.338 4.338 22 H 0.077 0.923 23 C -0.009 4.009 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.273 1.273 29 C -0.112 4.112 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.421 0.579 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.345 0.655 47 H 0.074 0.926 48 H 0.110 0.890 49 H 0.398 0.602 50 H 0.278 0.722 51 H 0.063 0.937 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.818 13.585 29.267 37.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.179 4.179 7 C 0.030 3.970 8 H 0.102 0.898 9 O -0.313 6.313 10 C -0.031 4.031 11 C 0.293 3.707 12 O -0.458 6.458 13 N -0.364 5.364 14 C 0.003 3.997 15 C -0.069 4.069 16 N -0.321 5.321 17 C -0.063 4.063 18 C 0.221 3.779 19 O -0.513 6.513 20 N -0.208 5.208 21 C -0.467 4.467 22 H 0.095 0.905 23 C -0.209 4.209 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.193 1.193 28 H -0.199 1.199 29 C -0.150 4.150 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.259 0.741 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.164 0.836 47 H 0.092 0.908 48 H 0.128 0.872 49 H 0.232 0.768 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.455 11.794 28.900 36.781 hybrid contribution 0.713 0.694 -1.147 1.518 sum -18.742 12.488 27.754 35.742 Atomic orbital electron populations 1.21823 0.94636 1.01811 1.02248 1.21072 0.95945 0.99725 0.93428 0.89980 1.21661 0.95584 1.00574 0.97749 1.21477 0.95540 1.01226 0.96780 1.22047 1.01147 0.99905 0.94836 1.22345 0.94786 0.96046 0.83797 0.89806 1.88032 1.35735 1.61870 1.45661 1.22368 0.88309 0.98456 0.93982 1.21011 0.80834 0.83510 0.85370 1.90741 1.53527 1.34136 1.67354 1.45568 1.21892 1.39684 1.29240 1.21043 0.95792 0.95943 0.86886 1.22066 0.95716 0.95980 0.93150 1.59890 1.04252 1.58358 1.09608 1.21522 0.93455 0.96755 0.94587 1.20968 0.82596 0.86945 0.87366 1.90506 1.53119 1.37286 1.70382 1.41897 1.19118 1.34178 1.25629 1.19635 1.05184 1.16845 1.05048 0.90489 1.25991 0.95160 0.97888 1.01898 1.69656 1.12486 1.31717 1.42077 0.85023 0.77750 0.78220 0.77561 1.19750 1.19337 1.19862 1.21665 0.93400 1.01116 0.98819 0.91506 0.92636 0.93203 0.92713 0.90592 0.91039 0.90574 0.92911 0.91065 0.87334 0.87000 0.74074 0.92754 0.92600 0.88595 0.92206 0.83602 0.90827 0.87201 0.76820 0.91246 0.91854 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.19 71.98 0.66 -0.58 16 2 C -0.08 -0.72 2.72 -10.79 -0.03 -0.75 16 3 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 4 C -0.12 -0.94 5.20 30.59 0.16 -0.78 16 5 C -0.11 -0.82 5.92 30.59 0.18 -0.64 16 6 C -0.14 -1.58 5.54 30.59 0.17 -1.41 16 7 C 0.09 1.11 2.61 30.59 0.08 1.19 16 8 H 0.08 0.67 7.79 -2.39 -0.02 0.65 16 9 O -0.39 -7.88 9.52 -129.94 -1.24 -9.11 16 10 C 0.05 0.63 6.23 71.24 0.44 1.08 16 11 C 0.51 11.00 7.91 87.66 0.69 11.70 16 12 O -0.58 -19.86 16.50 15.99 0.26 -19.60 16 13 N -0.71 -11.28 5.56 -463.07 -2.57 -13.85 16 14 C 0.13 2.81 5.93 86.38 0.51 3.32 16 15 C 0.06 1.16 5.80 86.30 0.50 1.66 16 16 N -0.69 -20.68 6.13 -517.93 -3.17 -23.85 16 17 C 0.07 2.21 6.17 85.56 0.53 2.74 16 18 C 0.43 20.42 7.82 87.66 0.69 21.10 16 19 O -0.63 -35.06 15.78 -3.07 -0.05 -35.11 16 20 N -0.57 -28.94 5.29 -306.99 -1.62 -30.57 16 21 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 24 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 25 Si 0.99 42.86 29.55 68.60 2.03 44.88 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 29 C -0.11 -1.50 4.85 30.59 0.15 -1.35 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.67 7.87 -2.39 -0.02 0.65 16 39 H 0.11 0.78 7.87 -2.39 -0.02 0.76 16 40 H 0.11 0.74 8.09 -2.39 -0.02 0.72 16 41 H 0.42 3.02 8.47 -92.71 -0.79 2.23 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.35 11.21 8.43 -89.69 -0.76 10.46 16 47 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 50 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 51 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 52 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -79.96 424.06 -1.42 -81.38 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -1.35 Total: 35.67 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 6.01 Total: 18.87 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -7.09 Total: -116.98 kcal Atomic # 8 Polarization: -62.80 SS G_CDS: -1.02 Total: -63.82 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -79.96 -1.42 -81.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134619669.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.464 kcal (2) G-P(sol) polarization free energy of solvation -79.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds